Os01g0882400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF679 family protein.
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Os01g0882400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF679 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 301.87 | 0.816 | 5 | 1.16 | 1.68 | -1.33 | -0.0785 | -3.32 | -0.54 | 9.53 | 30.06 | 4287 | -- | -- |
| 302.8 | 0.81 | 4.93 | 1.66 | 1.69 | -1.62 | -0.125 | -- | -0.493 | 9.69 | 29.8 | 4270 | -- | -- |
| 301.89 | 0.809 | 5 | 1.15 | 1.68 | -1.33 | -- | -3.31 | -0.539 | 9.53 | 30.06 | 4287 | -- | -- |
| 301.95 | 0.809 | 4.92 | 1.73 | 1.66 | -1.72 | -- | -- | -0.489 | 9.55 | 29.84 | 4280 | -- | -- |
| 458.94 | 0.998 | 5 | 1.27 | -- | -1.71 | -- | -2.66 | -0.432 | -- | 29.6 | 3834 | -- | -- |
| 404.62 | 0.943 | 4.87 | 1.27 | 1.74 | -- | 0.0726 | -- | -0.253 | 9.79 | -- | -- | -- | -- |
| 404.64 | 0.942 | 4.87 | 1.27 | 1.74 | -- | -- | -- | -0.253 | 9.79 | -- | -- | -- | -- |
| 451.3 | 0.989 | 4.88 | 1.9 | -- | -2.07 | -- | -- | -0.1 | -- | 28.4 | 3796 | -- | -- |
| 376.81 | 0.904 | 4.96 | -- | 1.69 | -1.39 | -- | -- | -0.594 | 9.45 | 29.9 | 4281 | -- | -- |
| 584.3 | 1.13 | 4.92 | 1.26 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 447.37 | 0.989 | 4.9 | -- | 1.73 | -- | -- | -- | -0.395 | 9.73 | -- | -- | -- | -- |
| 534.93 | 1.08 | 4.94 | -- | -- | -1.67 | -- | -- | -0.364 | -- | 28.72 | 3798 | -- | -- |
| 625.91 | 1.17 | 4.95 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 289.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 2 | 290.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 3 | 290.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 4 | 290.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 7 | 291.02 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 12 | 291.91 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 292.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 15 | 292.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 24 | 292.99 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 46 | 293.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 47 | 293.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 49 | 293.69 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 56 | 293.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 72 | 293.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 73 | 293.77 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 81 | 293.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 83 | 293.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 87 | 293.87 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 99 | 294.11 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 115 | 294.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 135 | 294.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 149 | 294.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 175 | 295.42 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 192 | 295.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 216 | 295.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 217 | 295.99 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 249 | 296.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 258 | 296.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 259 | 296.85 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 277 | 296.99 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 281 | 297.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 326 | 297.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 334 | 297.47 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 346 | 297.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 358 | 297.89 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 364 | 298.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 367 | 298.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 385 | 298.14 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 427 | 298.45 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 444 | 298.60 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 531 | 299.34 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 539 | 299.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 562 | 299.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 659 | 300.08 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 670 | 300.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 738 | 300.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 757 | 300.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 774 | 300.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 786 | 300.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 787 | 300.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 790 | 300.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 801 | 300.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 908 | 301.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 911 | 301.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 937 | 301.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 959 | 301.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 962 | 301.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 4 |