BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0311400 Os01g0311400|J065081E20
(198 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0311400 Zinc finger, RING-type domain containing protein 213 9e-56
Os05g0360300 84 9e-17
Os05g0360400 Zinc finger, RING-type domain containing protein 81 5e-16
Os03g0340100 70 1e-12
Os05g0359500 Similar to RING-H2 finger protein ATL5C precursor 68 5e-12
Os12g0432600 Zinc finger, RING-type domain containing protein 67 7e-12
Os07g0146300 67 1e-11
Os12g0433100 Zinc finger, RING-type domain containing protein 66 2e-11
Os01g0311100 65 4e-11
Os01g0212700 Zinc finger, RING-type domain containing protein 64 6e-11
Os06g0155200 64 7e-11
Os03g0340400 64 8e-11
Os12g0596200 Similar to RING-H2 protein 64 8e-11
Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-) 64 9e-11
Os04g0450400 Zinc finger, RING-type domain containing protein 64 9e-11
Os02g0561400 64 1e-10
Os02g0561000 64 1e-10
Os02g0560600 64 1e-10
Os02g0560200 64 1e-10
>Os01g0311400 Zinc finger, RING-type domain containing protein
Length = 198
Score = 213 bits (541), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 119/183 (65%)
Query: 1 MSDRGTSSSVSGDTDADSVPTADAAAPLWAPHGRALTGCXXXXXXXXXXXXXXYFWRVFX 60
MSDRGTSSSVSGDTDADSVPTADAAAPLWAPHGRALTGC YFWRVF
Sbjct: 1 MSDRGTSSSVSGDTDADSVPTADAAAPLWAPHGRALTGCLVVVNVALVLLVYLYFWRVFS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVRTRDDVLASLPVFVVRSSGGXXX 120
VSVRTRDDVLASLPVFVVRSSGG
Sbjct: 61 RKRAAAAASARSDDDDDDDEASSSASAPPPAAAAVSVRTRDDVLASLPVFVVRSSGGEKA 120
Query: 121 XXXXXXXXXXXXLRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPER 180
LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPER
Sbjct: 121 EAEAECAVCIAELRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPER 180
Query: 181 KGG 183
KGG
Sbjct: 181 KGG 183
>Os05g0360300
Length = 199
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 66/172 (38%), Gaps = 12/172 (6%)
Query: 18 SVPTADAAAPLWAPHGRALTGCXXXXXXXXXXXXXXYFWRVFXXXXXXXXXXXXXXX-XX 76
+ P + A WAPHG LT YFWR F
Sbjct: 5 AAPAVEDANKHWAPHGAVLTAFVVGINLLMVLLVFFYFWRFFSGKRGPPPSSSSMAGGAD 64
Query: 77 XXXXXXXXXXXXXXXXXXVSVR-----------TRDDVLASLPVFVVRSSGGXXXXXXXX 125
VS R +D+ +SLPV V S+
Sbjct: 65 DEEAASSDSDTSPAASPRVSWRRLREWPAGRRQQEEDIASSLPVSVYSSADVGNGKAAAE 124
Query: 126 XXXXXXXLRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAA 177
RDGD R LPRCGHRFHA CV WLRLH+TCPLCRA+ + LAA+
Sbjct: 125 CAVCIVEFRDGDLARLLPRCGHRFHADCVGAWLRLHSTCPLCRAAALPLAAS 176
>Os05g0360400 Zinc finger, RING-type domain containing protein
Length = 200
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 66/185 (35%), Gaps = 23/185 (12%)
Query: 18 SVPTADAAAPL----------WAPHGRALTGCXXXXXXXXXXXXXXYFWRVFXXXXXXXX 67
S PT AP W HG LT C YFWR F
Sbjct: 2 STPTVQMVAPAAAVVEDPSKHWTRHGPVLTACLVGINLLMVLLVFFYFWRFFSGKRGPPT 61
Query: 68 XXXXXXXXXXXXXXXXXXXXXXXXXXXVSVR---TRDDVLASLPVFVVRSSGGXXXXXXX 124
R R+D+ +SLPVFV SS
Sbjct: 62 SSTSTMASGGDDDEEEGASSSSSSADTSPGRHHQDREDIASSLPVFVYSSSAAAPDVGDA 121
Query: 125 XXXXX----------XXXLRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVAL 174
RDGD R LPRCGHRFHA C+ WL+LH+TCPLCRA+V+
Sbjct: 122 GGNGKAAAAAECAVCIVEFRDGDRARLLPRCGHRFHADCIGAWLQLHSTCPLCRAAVLLH 181
Query: 175 AAAPE 179
AA E
Sbjct: 182 PAAAE 186
>Os03g0340100
Length = 200
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 32/41 (78%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVA 173
LRDGD R LPRCGHRFHA CVD W R H TCPLCRA+V A
Sbjct: 140 LRDGDTGRLLPRCGHRFHAECVDKWFRSHATCPLCRAAVAA 180
>Os05g0359500 Similar to RING-H2 finger protein ATL5C precursor
Length = 223
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 32/38 (84%)
Query: 135 DGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVV 172
DG+E R LPRCGHRFHA CVD W +LH+TCPLCRA V+
Sbjct: 145 DGEEGRLLPRCGHRFHARCVDMWFQLHSTCPLCRAGVL 182
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALA 175
++DGD R LP CGH FHA CVDGWLR H TCP+CRA VV +A
Sbjct: 130 VKDGDTVRRLPACGHAFHAPCVDGWLRDHATCPMCRADVVKVA 172
>Os07g0146300
Length = 209
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 102 DVLASLPVFVVRSSGGXXXXXXXXXXXXX-----XXLRDGDECRALPRCGHRFHASCVDG 156
DVL SLPV V S L +GDE R LPRCGH FHA CVD
Sbjct: 79 DVLRSLPVTVYSRSTTAAAAKEEEDDGVECVVCLAELEEGDEARFLPRCGHGFHAECVDM 138
Query: 157 WLRLHTTCPLCRASVVALA 175
W+ H+TCPLCR +VV L+
Sbjct: 139 WVGSHSTCPLCRLTVVVLS 157
>Os12g0433100 Zinc finger, RING-type domain containing protein
Length = 212
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 100 RDDVLASLPVFVVRSSGGXXXXXXXXXXXXXXXLRDGDECRALPRCGHRFHASCVDGWLR 159
++DV A++P F S G +R G+ R LP CGH FHA+C+DGWLR
Sbjct: 130 QEDVEAAIPAFEY-SKGSGGAAEAEQCAVCIGVVRRGETVRRLPACGHAFHAACIDGWLR 188
Query: 160 LHTTCPLCRASV 171
H TCP+CRA V
Sbjct: 189 AHATCPVCRADV 200
>Os01g0311100
Length = 249
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 136 GDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVA 173
GD+ RALPRCGHRFH C+D W R ++TCPLCRA V A
Sbjct: 157 GDKARALPRCGHRFHVECIDAWFRENSTCPLCRADVEA 194
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 136 GDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPERK 181
G++ R LP+CGH FHA CVD WLR H+TCP+CRA+V A A K
Sbjct: 109 GEKVRQLPKCGHLFHAECVDAWLRAHSTCPMCRAAVEGPATAAIAK 154
>Os06g0155200
Length = 221
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 31/46 (67%)
Query: 134 RDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPE 179
R G+ R LP CGH FHA CVD WLR H TCPLCRA+V A PE
Sbjct: 173 RVGEAVRRLPSCGHLFHAGCVDEWLRAHATCPLCRAAVCAAGPEPE 218
>Os03g0340400
Length = 128
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 104 LASLPVFVVRSSGGXXXXXXXXXXXXXXXLRDGDECRALPRCGHRFHASCVDGWLRLHTT 163
+++LPVFV G +RDG+ R LPRCGHRFH C+D W R ++T
Sbjct: 25 ISALPVFV--HVAGCEAAAAVECAVCLGEVRDGERGRLLPRCGHRFHVECIDRWFRANST 82
Query: 164 CPLCRASVV 172
CP CRA+VV
Sbjct: 83 CPFCRAAVV 91
>Os12g0596200 Similar to RING-H2 protein
Length = 310
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 29/37 (78%)
Query: 135 DGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASV 171
DGDE RALP C H FHA C+D WLR H +CPLCRA+V
Sbjct: 113 DGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAV 149
>Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 325
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCR 168
L DG+E R LPRCGH FHA CVD WL H+TCPLCR
Sbjct: 141 LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>Os04g0450400 Zinc finger, RING-type domain containing protein
Length = 415
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCRASVVALAAAPERKGG 183
+DG+ R LP+CGH FH C+D WLR H CPLCR+ V+ AA GG
Sbjct: 209 FQDGELVRLLPKCGHAFHVPCIDTWLRAHVNCPLCRSDVLGPAATATESGG 259
>Os02g0561400
Length = 314
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCR 168
L DG+E R LPRCGH FHA CVD WL H+TCPLCR
Sbjct: 130 LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0561000
Length = 314
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCR 168
L DG+E R LPRCGH FHA CVD WL H+TCPLCR
Sbjct: 130 LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560600
Length = 314
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCR 168
L DG+E R LPRCGH FHA CVD WL H+TCPLCR
Sbjct: 130 LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560200
Length = 314
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 133 LRDGDECRALPRCGHRFHASCVDGWLRLHTTCPLCR 168
L DG+E R LPRCGH FHA CVD WL H+TCPLCR
Sbjct: 130 LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,824,526
Number of extensions: 148900
Number of successful extensions: 967
Number of sequences better than 1.0e-10: 34
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 34
Length of query: 198
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 102
Effective length of database: 12,023,257
Effective search space: 1226372214
Effective search space used: 1226372214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 153 (63.5 bits)