FiT-DB / Search/ Help/ Sample detail

Os01g0311400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0216) R2 : 0.352
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.876 (0.0564) R2dC : 0.344 R2C : 0.343
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0454) R2dN8 : 0.00991 R2N8 : 0.00812
σ : 0.407
deviance : 75.61
__
_____
C
peak time of C : 6.57
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.82 0.345 11.6 0.477 1.25 0.854 0.928 -0.0749 0.165 9.19 27.04 9 -- --
53.83 0.342 11.6 0.478 1.26 0.856 0.988 -- 0.165 9.2 27.05 8 -- --
55.03 0.345 11.7 0.53 1.28 0.841 -- -0.596 0.128 9.19 22.81 5 -- --
56.91 0.351 11.6 0.504 1.31 0.831 -- -- 0.157 9.19 20 5 -- --
73.9 0.4 11.6 0.369 -- 0.919 -- 1.79 0.249 -- 4.55 851 -- --
68.39 0.388 11.7 0.469 0.865 -- 0.698 -- 0.161 6.76 -- -- -- --
69.55 0.391 11.7 0.48 0.87 -- -- -- 0.159 6.6 -- -- -- --
69.26 0.388 11.7 0.521 -- 1.15 -- -- 0.218 -- 7.431 829 -- --
63.54 0.371 11.7 -- 1.36 0.856 -- -- 0.126 9.23 20 5 -- --
108.98 0.488 11.7 0.501 -- -- -- -- 0.177 -- -- -- -- --
75.61 0.407 11.7 -- 0.876 -- -- -- 0.105 6.57 -- -- -- --
75.92 0.406 11.7 -- -- 1.13 -- -- 0.16 -- 10 819 -- --
115.59 0.502 11.7 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.89 radiation 10.0 270 < th dose dependent rect. 1 15
3 49.01 radiation 30.0 90 < th dose dependent rect. 3 6
4 49.02 radiation 20.0 90 < th dose independent rect. 3 6
7 49.32 radiation 20.0 90 < th dose dependent rect. 3 15
9 49.46 radiation 10.0 270 < th dose dependent rect. 1 7
11 49.58 radiation 20.0 90 < th dose dependent sin 3 NA
12 49.64 radiation 10.0 270 < th dose independent rect. 1 6
13 49.71 temperature 10.0 270 > th dose dependent rect. 1 6
14 49.77 radiation 30.0 90 < th dose dependent rect. 3 8
15 49.77 radiation 40.0 10 < th dose dependent rect. 14 19
17 49.81 radiation 40.0 10 < th dose dependent rect. 12 21
18 49.83 humidity 50.0 270 > th dose independent rect. 6 19
20 49.86 radiation 10.0 90 < th dose independent rect. 3 15
23 49.90 temperature 10.0 270 > th dose dependent rect. 2 4
25 49.95 humidity 80.0 270 > th dose independent rect. 1 6
30 50.03 wind 1.0 270 > th dose independent rect. 3 2
32 50.04 radiation 1.0 270 < th dose independent rect. 2 4
39 50.21 temperature 10.0 270 > th dose dependent rect. 3 2
57 50.46 humidity 80.0 90 > th dose independent rect. 3 6
58 50.47 wind 1.0 270 > th dose independent rect. 1 5
65 50.58 radiation 20.0 10 < th dose independent rect. 3 6
70 50.60 humidity 60.0 90 > th dose dependent rect. 3 6
80 50.70 radiation 40.0 270 < th dose independent rect. 13 17
84 50.72 humidity 80.0 270 > th dose independent rect. 3 2
98 50.80 atmosphere 1010.0 270 < th dose independent rect. 1 5
107 50.86 humidity 50.0 270 > th dose dependent rect. 1 6
117 50.92 wind 7.0 270 < th dose independent rect. 1 5
119 50.92 temperature 10.0 270 > th dose independent rect. 1 5
121 50.92 temperature 30.0 270 < th dose independent rect. 1 5
122 50.92 humidity 50.0 270 > th dose independent rect. 1 5
125 50.92 atmosphere 995.0 270 > th dose independent rect. 1 5
131 50.92 temperature 10.0 270 > th dose independent rect. 6 19
132 50.93 radiation 30.0 10 < th dose dependent rect. 23 23
136 50.96 radiation 10.0 270 < th dose dependent rect. 3 2
139 50.98 wind 9.0 270 < th dose independent rect. 6 19
147 50.99 radiation 20.0 90 < th dose dependent rect. 3 10
153 51.03 precipitation 0.1 270 < th dose independent rect. 6 8
155 51.03 precipitation 0.1 270 < th dose dependent rect. 6 8
156 51.04 wind 9.0 270 < th dose independent rect. 3 2
157 51.04 temperature 10.0 270 > th dose independent rect. 3 2
159 51.04 temperature 30.0 270 < th dose independent rect. 3 2
160 51.04 humidity 50.0 270 > th dose independent rect. 3 2
163 51.04 atmosphere 995.0 270 > th dose independent rect. 3 2
164 51.04 atmosphere 1010.0 270 < th dose independent rect. 3 2
169 51.04 temperature 10.0 270 > th dose independent rect. 5 22
181 51.10 temperature 10.0 270 > th dose independent rect. 6 8
182 51.10 atmosphere 995.0 270 > th dose independent rect. 6 8
183 51.10 atmosphere 1015.0 270 < th dose independent rect. 6 8
184 51.10 temperature 10.0 270 > th dose independent rect. 14 16
185 51.11 atmosphere 995.0 270 > th dose dependent rect. 1 5
201 51.17 precipitation 0.1 270 < th dose independent rect. 14 16
202 51.17 precipitation 0.1 270 < th dose dependent rect. 14 16
204 51.19 precipitation 0.1 270 < th dose independent rect. 1 5
205 51.19 humidity 50.0 270 > th dose dependent rect. 3 2
206 51.19 precipitation 0.1 270 < th dose dependent rect. 1 5
222 51.22 radiation 30.0 10 < th dose dependent sin 3 NA
225 51.26 radiation 40.0 10 < th dose dependent rect. 3 6
236 51.33 atmosphere 995.0 270 > th dose dependent rect. 3 2
244 51.35 wind 9.0 270 < th dose independent rect. 6 8
250 51.37 radiation 1.0 270 > th dose independent rect. 4 10
262 51.38 radiation 1.0 270 < th dose independent rect. 2 13
264 51.40 radiation 1.0 270 < th dose independent rect. 1 16
272 51.42 radiation 10.0 270 < th dose dependent rect. 17 9
285 51.47 radiation 10.0 270 < th dose independent rect. 17 9
286 51.47 precipitation 0.1 270 < th dose independent rect. 6 19
292 51.47 precipitation 0.1 270 < th dose dependent rect. 6 19
293 51.48 precipitation 0.1 270 < th dose independent rect. 3 2
308 51.48 precipitation 0.1 270 < th dose dependent rect. 3 2
323 51.53 wind 9.0 270 < th dose independent rect. 14 16
325 51.53 radiation 1.0 10 > th dose dependent rect. 13 23
342 51.62 radiation 20.0 90 < th dose independent rect. 12 21
349 51.65 atmosphere 1015.0 270 < th dose independent rect. 6 19
357 51.67 atmosphere 995.0 270 > th dose independent rect. 14 16
366 51.71 humidity 70.0 10 > th dose independent rect. 3 6
368 51.71 wind 9.0 270 < th dose independent rect. 5 22
371 51.72 temperature 10.0 270 > th dose dependent rect. 18 7
372 51.73 humidity 50.0 270 > th dose independent rect. 6 7
385 51.78 radiation 20.0 10 < th dose dependent rect. 4 16
393 51.81 humidity 50.0 270 > th dose independent rect. 17 9
404 51.86 radiation 1.0 270 < th dose independent sin 4 NA
405 51.86 wind 7.0 270 < th dose independent rect. 17 9
413 51.90 radiation 1.0 270 > th dose independent sin 4 NA
418 51.91 radiation 1.0 90 > th dose independent rect. 7 8
454 51.98 radiation 40.0 90 < th dose dependent rect. 15 16
465 52.03 radiation 10.0 10 < th dose independent rect. 4 16
473 52.05 radiation 30.0 10 < th dose dependent rect. 1 23
475 52.06 temperature 10.0 10 > th dose dependent rect. 3 6
479 52.08 precipitation 0.1 270 < th dose independent rect. 5 22
481 52.08 precipitation 0.1 270 < th dose dependent rect. 5 22
482 52.09 temperature 15.0 270 > th dose independent rect. 2 15
493 52.14 radiation 20.0 90 < th dose independent rect. 15 18
500 52.17 atmosphere 995.0 270 > th dose independent rect. 6 19
509 52.19 radiation 30.0 10 < th dose dependent rect. 10 23
511 52.20 temperature 10.0 270 > th dose independent rect. 17 9
516 52.20 atmosphere 1015.0 270 < th dose independent rect. 2 15
522 52.23 wind 7.0 90 < th dose independent rect. 19 8
535 52.26 radiation 40.0 10 < th dose dependent rect. 3 8
570 52.32 atmosphere 995.0 10 > th dose dependent rect. 3 6
572 52.33 wind 7.0 10 < th dose independent rect. 3 6
595 52.38 wind 9.0 270 < th dose independent rect. 2 15
606 52.43 radiation 20.0 90 < th dose independent rect. 13 18
616 52.46 temperature 15.0 90 > th dose independent rect. 19 8
624 52.48 temperature 10.0 30 > th dose independent rect. 3 6
626 52.48 temperature 30.0 30 < th dose independent rect. 3 6
627 52.48 humidity 50.0 30 > th dose independent rect. 3 6
629 52.48 atmosphere 995.0 30 > th dose independent rect. 3 6
630 52.48 atmosphere 1015.0 30 < th dose independent rect. 3 6
632 52.48 temperature 30.0 270 < th dose independent rect. 18 8
640 52.48 temperature 10.0 30 > th dose independent rect. 9 18
652 52.49 precipitation 0.1 30 < th dose independent rect. 3 6
660 52.49 precipitation 0.1 30 < th dose dependent rect. 3 6
671 52.52 precipitation 0.1 10 < th dose independent rect. 9 18
673 52.52 precipitation 0.1 10 < th dose dependent rect. 9 18
678 52.53 atmosphere 995.0 90 > th dose independent rect. 19 8
686 52.53 radiation 20.0 90 < th dose independent rect. 15 16
736 52.62 wind 9.0 270 < th dose dependent rect. 1 6
739 52.62 radiation 30.0 10 < th dose dependent rect. 12 23
744 52.63 precipitation 0.1 270 < th dose independent rect. 2 16
747 52.63 precipitation 0.1 270 < th dose dependent rect. 2 16
797 52.71 atmosphere 995.0 270 > th dose independent rect. 2 15
810 52.73 radiation 20.0 10 < th dose independent rect. 13 20
863 52.82 temperature 10.0 1440 > th dose independent rect. 4 6
866 52.82 atmosphere 995.0 1440 > th dose independent rect. 4 6
867 52.82 atmosphere 1015.0 1440 < th dose independent rect. 4 6
868 52.82 temperature 10.0 1440 > th dose independent rect. 10 18
872 52.82 wind 9.0 270 < th dose dependent rect. 3 2
893 52.85 wind 1.0 270 > th dose independent rect. 7 18
894 52.85 wind 9.0 10 < th dose independent rect. 9 18
912 52.88 radiation 10.0 10 < th dose independent rect. 23 23
965 52.97 wind 9.0 30 < th dose dependent rect. 3 6
975 52.99 radiation 1.0 10 > th dose dependent rect. 7 5