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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0360400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0644) R2 : 0.647
β1 : 1.83 (0.345) R2dD : 0.0649 R2D : -0.147
β2 : 3.99 (0.156) R2dC : 0.714 R2C : 0.0403
β3 : -5.63 (0.262) R2dE : 0.705 R2E : -0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.1 (1.47) R2dD*E : 0.163 R2D*E : -0.0362
γ1 : 0.0127 (0.139) R2dN8 : 1.84e-05 R2N8 : -0.00207
σ : 1.03
deviance : 489.15
__
_____
C
peak time of C : 22.9
E
wheather : temperature
threshold : 23.46
memory length : 844
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
481.04 1.03 4.1 2.06 4.01 -5.74 -1.58 14 0.0973 22.9 23.37 834 13.5 --
583.16 1.12 4.16 1.71 2.56 -4.77 -0.595 -- 0.603 23.4 16.45 12252 14 --
489.15 1.03 4.13 1.83 3.99 -5.63 -- 12.1 0.0127 22.9 23.46 844 13.7 --
570.84 1.11 4.13 1.39 2.43 -4.61 -- -- 0.634 23.7 16.19 12026 9.59 --
651.91 1.19 4.11 0.999 -- -6.95 -- 7.15 -0.0271 -- -134.1 1474 18.5 --
978.62 1.47 4.46 -1.51 2.17 -- -0.477 -- -1.01 23.7 -- -- -- --
979.61 1.47 4.46 -1.49 2.17 -- -- -- -1.01 23.7 -- -- -- --
647.89 1.19 4.28 -0.17 -- -6.77 -- -- -0.371 -- -165.1 1471 18.3 --
585.62 1.13 4.15 -- 2.6 -3.88 -- -- 0.32 23.7 19.31 9398 12.3 --
1275.89 1.67 4.41 -1.43 -- -- -- -- -0.985 -- -- -- -- --
1038.42 1.51 4.42 -- 2.15 -- -- -- -0.844 23.6 -- -- -- --
647.61 1.19 4.27 -- -- -6.87 -- -- -0.327 -- -164.7 1471 18.3 --
1329.98 1.7 4.37 -- -- -- -- -- -0.826 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 505.00 radiation 1 720 > th dose independent rect. 9 21
2 509.57 temperature 25 720 > th dose dependent sin 17 NA
3 511.75 temperature 25 720 > th dose dependent rect. 12 11
6 512.48 radiation 1 1440 < th dose dependent rect. 10 20
15 513.26 temperature 25 720 > th dose dependent rect. 11 17
64 524.58 radiation 1 1440 > th dose independent rect. 12 18
84 529.62 radiation 1 1440 < th dose independent rect. 10 20
96 531.65 radiation 1 720 < th dose dependent rect. 15 10
108 533.48 radiation 1 1440 < th dose dependent sin 14 NA
122 534.86 radiation 1 1440 < th dose dependent rect. 5 14
123 534.87 radiation 1 1440 < th dose dependent rect. 5 16
124 534.95 radiation 1 1440 < th dose dependent rect. 5 20
125 534.97 radiation 1 1440 < th dose dependent rect. 5 22
129 535.04 radiation 1 1440 < th dose dependent rect. 24 19
131 535.05 radiation 1 1440 < th dose dependent rect. 24 21
153 535.46 radiation 1 1440 < th dose dependent rect. 2 17
154 535.47 radiation 1 1440 < th dose dependent rect. 2 19
157 535.48 radiation 1 1440 < th dose dependent rect. 20 23
162 535.54 radiation 1 1440 < th dose dependent rect. 2 23
176 535.72 radiation 1 1440 < th dose dependent no NA NA
211 536.98 radiation 1 720 > th dose independent rect. 10 9
221 536.98 radiation 1 1440 < th dose dependent rect. 18 23
223 537.16 radiation 1 720 < th dose dependent rect. 10 15
245 538.49 radiation 1 1440 < th dose dependent rect. 15 23
248 538.65 radiation 1 720 < th dose dependent rect. 7 18
273 541.08 radiation 1 720 < th dose independent rect. 15 10
312 545.87 radiation 1 720 < th dose independent rect. 10 15
330 548.09 humidity 90 43200 > th dose dependent rect. 21 1
335 548.61 radiation 1 4320 > th dose independent rect. 16 2
338 549.06 radiation 1 1440 > th dose independent sin 14 NA
340 549.15 radiation 1 1440 < th dose dependent sin 23 NA
341 549.46 humidity 90 43200 > th dose independent rect. 20 2
351 550.23 radiation 1 720 > th dose independent sin 16 NA
390 553.29 humidity 90 43200 < th dose independent rect. 18 4
392 553.35 humidity 80 43200 > th dose independent rect. 14 1
399 553.66 humidity 90 43200 < th dose independent rect. 20 1
421 554.90 temperature 25 720 > th dose dependent rect. 2 23
425 554.96 temperature 25 720 > th dose dependent no NA NA
427 554.97 radiation 1 720 < th dose dependent rect. 7 12
451 555.15 temperature 25 720 > th dose independent rect. 8 15
461 555.35 radiation 1 4320 < th dose independent rect. 16 2
472 555.59 radiation 1 1440 < th dose dependent rect. 10 9
475 555.66 radiation 1 4320 > th dose independent rect. 12 7
487 555.72 humidity 80 43200 < th dose independent rect. 14 1
489 555.73 radiation 1 1440 < th dose dependent rect. 10 11
491 555.77 radiation 10 14400 < th dose dependent rect. 18 11
501 555.97 radiation 1 1440 < th dose dependent rect. 12 7
513 556.10 radiation 1 1440 < th dose dependent rect. 12 9
514 556.14 radiation 1 1440 < th dose independent sin 14 NA
566 556.88 radiation 1 4320 > th dose independent sin 17 NA
569 556.91 radiation 1 720 < th dose independent sin 19 NA
585 557.28 wind 5 43200 < th dose independent rect. 11 1
624 558.24 humidity 80 43200 > th dose independent rect. 11 7
632 558.70 radiation 1 720 < th dose independent rect. 15 3
635 558.73 radiation 40 14400 < th dose dependent rect. 18 3
637 558.75 temperature 25 720 > th dose dependent rect. 15 23
638 558.79 radiation 40 14400 < th dose dependent rect. 18 1
663 559.85 wind 5 43200 > th dose independent rect. 11 2
677 560.20 radiation 1 1440 > th dose independent rect. 5 14
689 560.32 radiation 1 4320 > th dose independent rect. 9 10
733 560.91 radiation 1 1440 > th dose independent no NA NA
796 561.35 radiation 10 14400 < th dose dependent rect. 18 7
800 561.38 radiation 10 14400 < th dose dependent rect. 18 9
863 562.25 humidity 80 43200 > th dose dependent rect. 17 2
874 562.50 radiation 1 4320 < th dose independent rect. 16 5
887 562.67 radiation 1 4320 < th dose independent rect. 12 9
890 562.69 radiation 1 4320 < th dose independent rect. 12 7
891 562.70 radiation 1 4320 < th dose independent rect. 16 11
897 562.76 radiation 1 4320 < th dose independent rect. 16 9
900 562.79 radiation 1 4320 < th dose independent rect. 12 15
906 562.84 radiation 1 4320 < th dose independent rect. 12 13
933 563.36 radiation 1 1440 < th dose independent rect. 5 16
934 563.37 radiation 1 1440 < th dose independent rect. 5 14
938 563.40 radiation 1 1440 < th dose independent rect. 5 20
939 563.40 radiation 1 1440 < th dose independent rect. 5 22
942 563.43 temperature 25 720 > th dose independent rect. 10 12
946 563.56 temperature 25 720 > th dose independent sin 20 NA
954 563.70 radiation 1 14400 < th dose independent rect. 18 11
960 563.80 temperature 25 720 > th dose dependent rect. 17 23
964 563.88 radiation 1 1440 < th dose independent rect. 24 19
965 563.88 radiation 1 1440 < th dose independent rect. 24 21
985 564.11 temperature 25 720 < th dose independent rect. 8 16
994 564.18 radiation 1 1440 < th dose independent rect. 2 19
995 564.18 radiation 1 1440 < th dose independent rect. 20 23
999 564.19 radiation 1 1440 < th dose independent rect. 2 17