BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0618600 Os12g0618600|AK073742
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0618600 Similar to Transcriptional activator HAP2 540 e-154
Os03g0647600 Similar to Nf-Y-A subunit 197 9e-51
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 99 6e-21
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 83 3e-16
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 81 9e-16
Os07g0608200 Similar to CCAAT-binding transcription factor ... 78 9e-15
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 75 5e-14
Os12g0613000 Similar to NF-YA subunit 73 2e-13
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 72 5e-13
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/311 (85%), Positives = 266/311 (85%)
Query: 1 MMSFNKSQEGFGQVAAVATLASNGGGSLPWLLYGEPLGQGKPAMSPEGVVPRAQTPLDPP 60
MMSFNKSQEGFGQVAAVATLASNGGGSLPWLLYGEPLGQGKPAMSPEGVVPRAQTPLDPP
Sbjct: 1 MMSFNKSQEGFGQVAAVATLASNGGGSLPWLLYGEPLGQGKPAMSPEGVVPRAQTPLDPP 60
Query: 61 QVPAMDRGVPEILNFSMVPGKGEKCSEHSTTIALQSPFAEYNGCFELGLGQSVVPSNYPY 120
QVPAMDRGVPEILNFSMVPGKGEKCSEHSTTIALQSPFAEYNGCFELGLGQSVVPSNYPY
Sbjct: 61 QVPAMDRGVPEILNFSMVPGKGEKCSEHSTTIALQSPFAEYNGCFELGLGQSVVPSNYPY 120
Query: 121 ADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQCSXXXXXXXXXXXXXXXXXLV 180
ADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQCS LV
Sbjct: 121 ADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQCSAIIRRRHARAKAERENRLV 180
Query: 181 KARKPYLHESRHLHAMRRARGSGGRFLNXXXXXXXXXXXXXXXVMDIIIPPLCPAASPSS 240
KARKPYLHESRHLHAMRRARGSGGRFLN VMDIIIPPLCPAASPSS
Sbjct: 181 KARKPYLHESRHLHAMRRARGSGGRFLNTKKETNGKTTGGGRKVMDIIIPPLCPAASPSS 240
Query: 241 EQCNPXXXXXXXXXXXXXIYEHEDMDHFHSFDHLRTHFFTPLPSLMDVEHGAGNPFKWTA 300
EQCNP IYEHEDMDHFHSFDHLRTHFFTPLPSLMDVEHGAGNPFKWTA
Sbjct: 241 EQCNPSSVSSLSGSEVSSIYEHEDMDHFHSFDHLRTHFFTPLPSLMDVEHGAGNPFKWTA 300
Query: 301 ASDGCCDLLKA 311
ASDGCCDLLKA
Sbjct: 301 ASDGCCDLLKA 311
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 181/355 (50%), Gaps = 45/355 (12%)
Query: 1 MMSFNKSQEGFGQVAAVATLASNGGGSL---PWLLYGEPLGQGKPAMSPEG---VVPRAQ 54
M+SF +S EGFG VAA LLYGE + + A+ G VVP +
Sbjct: 1 MLSFKQSHEGFGHVAAAGAGPQQQQQPWWAGSQLLYGEASPE-EAALRDGGQFQVVPGGR 59
Query: 55 TPLDPPQ-------VPAMDR-----GVPEILNFSMVPGK------GEKCSEHSTTIALQS 96
LDP VPAM + G PE+L FS+ G GEK EHS TIA+QS
Sbjct: 60 AALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSATIAMQS 119
Query: 97 PFAEYNGCFELGLGQSVVPSNYPYADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVN 156
P EYNG FELGLGQS+V NYP DQ YGL++ Y ++ GR+L+P N PADAPIYVN
Sbjct: 120 PLPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVN 179
Query: 157 AKQCSXXXXXXXXXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFLNXXXXXXXX 216
AKQ LVK RKPYLHESRH HAMRRARGSGGRFLN
Sbjct: 180 AKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAA 239
Query: 217 XXXXXXXV-MDIIIPPLCPAASPSSEQCNPXXXXXXXXXXXXXIYEH------EDMDHFH 269
+ ++ P A P S +Y+H + DH++
Sbjct: 240 GCGGSSKTPLASLVSPADVAHRPGSGGRASSLSGSDVSSPGGVMYDHHRHDDADAADHYN 299
Query: 270 SFD-HLRTHFFTPLPSLMDVEHGAGN-----------PFKW-TAASDGCCDLLKA 311
S D HLRT FFTPLP +MD G G+ PF+W TAA DGCC+LLKA
Sbjct: 300 SIDHHLRTPFFTPLPIIMDSGGGGGDHASHSAAAVAAPFRWATAAGDGCCELLKA 354
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 80 GKGEKCSEHST-TIALQSPFAEYNGCFELGLGQSVVPSNYPYADQHYGLLSPYGVRPTPS 138
GK K E S TIA SP EY G FEL LG S+V +N+ ++Q YG+ SPYG + T +
Sbjct: 31 GKDLKFHESSAPTIAAYSPLQEYQGHFELALGHSMVCTNFCNSEQSYGVYSPYGAQ-TMA 89
Query: 139 GRILIPPNMPADA-PIYVNAKQCSXXXXXXXXXXXXXXXXXLVKARKPYLHESRHLHAMR 197
GR+L+PP + D PIYVNAKQ + + ++RKPYLHESRH HAMR
Sbjct: 90 GRMLLPPAIATDVGPIYVNAKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESRHRHAMR 149
Query: 198 RARGSGGRFLN 208
RARGSGGRFLN
Sbjct: 150 RARGSGGRFLN 160
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 117 NYPYADQHYG----------LLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQCSXXXXX 166
+YPYAD YG ++ P V S R+ +P + PIYVNAKQ
Sbjct: 94 SYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRR 153
Query: 167 XXXXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFLN 208
LVK RKPYLHESRH HAM+RARG+GGRFLN
Sbjct: 154 RQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLN 195
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 87 EHSTTIALQSPFAEYNGCF-ELGLGQSVVPSNYPYADQHY-GLLSPYGVRPTPS------ 138
+H T + + ++Y F +L L Q + + Y Y D +Y G++ PYG + +
Sbjct: 87 KHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQL 146
Query: 139 -----GRILIPPNMPADAPIYVNAKQCSXXXXXXXXXXXXXXXXXLVKARKPYLHESRHL 193
R+ +P + ++ P+YVNAKQ +VK+RKPYLHESRH
Sbjct: 147 PGLTHSRMPLPLEI-SEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQ 205
Query: 194 HAMRRARGSGGRFLN 208
HAMRRARG+GGRFLN
Sbjct: 206 HAMRRARGTGGRFLN 220
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 119 PY-ADQHYG-LLSPYG----VRPTPSG----RILIPPNMPADAPIYVNAKQCSXXXXXXX 168
PY AD +YG +L+ Y V P +G R+ +P A+ PI+VNAKQ
Sbjct: 109 PYTADAYYGGVLTGYSSHAIVHPQQNGTANSRVPLPVEPAAEEPIFVNAKQYHAILRRRQ 168
Query: 169 XXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFLN 208
LVK RKPYLHESRH HAM+RARGSGGRFLN
Sbjct: 169 IRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFLN 208
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 109 LGQSVVPSNYPYADQHYG-LLSPYGVRPTPSGRIL-IPPN---MPADA---PIYVNAKQC 160
LG + P +YPY +YG Y +P + ++ +PP+ + DA PIYVNA+Q
Sbjct: 32 LGPATAPVSYPYISTYYGGTYGAYSGQPLVNAALMAMPPHSVPLVTDAVVEPIYVNARQY 91
Query: 161 SXXXXXXXXXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFLN 208
K RKPYLHESRHLHA++RARGSGGRFLN
Sbjct: 92 HGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLN 139
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 18/104 (17%)
Query: 118 YPYADQHYG-LLSPYGVRPTPSGRILIPPN---------MPADA---PIYVNAKQCSXXX 164
Y D +YG L + YG +P ++ PP +P DA P+YVNAKQ +
Sbjct: 68 YANIDPYYGSLYAAYGGQP-----MMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNAIL 122
Query: 165 XXXXXXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFLN 208
LVK RKPYLHESRH HA++RARG+GGRFLN
Sbjct: 123 RRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN 166
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 117 NYPYADQHY--GLLSPYG----VRPTPSG----RILIPPNMPADAPIYVNAKQCSXXXXX 166
+YPY Y G+L+ Y V P +G R+ +P + + PI+VNAKQ +
Sbjct: 120 SYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRR 179
Query: 167 XXXXXXXXXXXXLVKARKPYLHESRHLHAMRRARGSGGRFL 207
VK RKPYLHESRH HAM+RARGSGGRFL
Sbjct: 180 RQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,690,263
Number of extensions: 515061
Number of successful extensions: 1261
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 9
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)