Os12g0618600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator HAP2.
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Os12g0618600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator HAP2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.47 | 0.757 | 8.22 | 6.5 | 1.07 | 1.7 | -0.0267 | 3.22 | 0.608 | 7.96 | 26.37 | 258 | -- | -- |
| 260.72 | 0.752 | 8.25 | 6.19 | 1.06 | 2.05 | -0.122 | -- | 0.581 | 8.03 | 27.16 | 263 | -- | -- |
| 259.37 | 0.75 | 8.22 | 6.47 | 1.07 | 1.72 | -- | 3.14 | 0.613 | 8 | 26.6 | 263 | -- | -- |
| 260.75 | 0.752 | 8.25 | 6.19 | 1.07 | 2.05 | -- | -- | 0.582 | 8.04 | 27.17 | 267 | -- | -- |
| 300.71 | 0.812 | 8.27 | 6.42 | -- | 1.56 | -- | 2.11 | 0.576 | -- | 26.04 | 30 | -- | -- |
| 330.04 | 0.852 | 8.26 | 6.46 | 0.76 | -- | 0.00346 | -- | 0.588 | 11 | -- | -- | -- | -- |
| 330.04 | 0.851 | 8.26 | 6.46 | 0.76 | -- | -- | -- | 0.588 | 11 | -- | -- | -- | -- |
| 301.61 | 0.809 | 8.3 | 6.29 | -- | 1.77 | -- | -- | 0.541 | -- | 26.3 | 24 | -- | -- |
| 426.17 | 0.961 | 8.78 | -- | 0.856 | 4.88 | -- | -- | -1.73 | 11.2 | 16.32 | 47520 | -- | -- |
| 365.92 | 0.894 | 8.28 | 6.44 | -- | -- | -- | -- | 0.583 | -- | -- | -- | -- | -- |
| 1428.71 | 1.77 | 8.42 | -- | 0.714 | -- | -- | -- | -0.131 | 10.4 | -- | -- | -- | -- |
| 471.79 | 1.01 | 8.8 | -- | -- | 4.84 | -- | -- | -1.71 | -- | 16.23 | 47520 | -- | -- |
| 1459.8 | 1.78 | 8.44 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 30 | 245.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 31 | 245.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 32 | 245.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 54 | 245.50 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 74 | 245.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 78 | 245.63 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 104 | 245.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 122 | 246.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 123 | 246.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 127 | 246.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 130 | 246.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 133 | 246.38 | radiation | 1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 136 | 246.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 9 |
| 158 | 246.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 20 |
| 185 | 246.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 14 |
| 274 | 247.72 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 297 | 247.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 301 | 247.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 317 | 248.02 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 320 | 248.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 331 | 248.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 360 | 248.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 491 | 248.72 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 510 | 248.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 512 | 248.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 518 | 248.83 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 519 | 248.84 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 520 | 248.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 523 | 248.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 535 | 248.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 584 | 248.92 | radiation | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 629 | 249.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 640 | 249.05 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 710 | 249.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 754 | 249.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 859 | 250.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 935 | 250.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 948 | 250.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 20 |
| 949 | 250.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 955 | 250.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 970 | 250.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 988 | 250.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |