Os03g0696300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CCAAT-binding transcription factor, subunit B family protein.
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Os03g0696300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CCAAT-binding transcription factor, subunit B family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.94 | 0.308 | 10.9 | 1.21 | 1.37 | 1.23 | 0.0708 | -1.91 | 0.379 | 7.35 | 26 | 6948 | -- | -- |
| 46.28 | 0.317 | 10.9 | 1.3 | 1.35 | 1.24 | 0.102 | -- | 0.354 | 7.33 | 25.5 | 24247 | -- | -- |
| 42.92 | 0.305 | 10.9 | 1.24 | 1.37 | 1.22 | -- | -1.86 | 0.372 | 7.3 | 26.1 | 7035 | -- | -- |
| 45.34 | 0.314 | 10.9 | 1.24 | 1.38 | 1.33 | -- | -- | 0.332 | 7.24 | 24.8 | 24319 | -- | -- |
| 140.45 | 0.552 | 10.9 | 1.25 | -- | 1.26 | -- | -1.77 | 0.32 | -- | 26.7 | 7107 | -- | -- |
| 88.4 | 0.441 | 10.8 | 2.33 | 1.37 | -- | 0.154 | -- | 0.896 | 7.09 | -- | -- | -- | -- |
| 88.46 | 0.44 | 10.8 | 2.33 | 1.37 | -- | -- | -- | 0.896 | 7.1 | -- | -- | -- | -- |
| 141.69 | 0.554 | 10.9 | 1.09 | -- | 1.27 | -- | -- | 0.319 | -- | 23.7 | 25926 | -- | -- |
| 45.15 | 0.313 | 10.9 | -- | 1.52 | 1.88 | -- | -- | 0.0989 | 7.28 | 21.1 | 29250 | -- | -- |
| 187.54 | 0.64 | 10.8 | 2.36 | -- | -- | -- | -- | 0.92 | -- | -- | -- | -- | -- |
| 231.73 | 0.712 | 10.8 | -- | 1.4 | -- | -- | -- | 0.636 | 7 | -- | -- | -- | -- |
| 143.44 | 0.558 | 11 | -- | -- | 2.06 | -- | -- | 0.0358 | -- | 20.8 | 31837 | -- | -- |
| 334.19 | 0.853 | 10.8 | -- | -- | -- | -- | -- | 0.659 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.74 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 2 | 38.80 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 38.82 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 33 | 39.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 58 | 39.66 | temperature | 20 | 14400 | < th | dose dependent | sin | 12 | NA |
| 81 | 39.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 102 | 39.92 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 112 | 39.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 119 | 40.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 127 | 40.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 195 | 40.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 206 | 40.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 209 | 40.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 293 | 40.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 299 | 40.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 367 | 40.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 373 | 40.91 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 416 | 41.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 468 | 41.19 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 508 | 41.33 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 512 | 41.34 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 521 | 41.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 625 | 41.53 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 668 | 41.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 687 | 41.58 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 779 | 41.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 810 | 41.66 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |