BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0696300 Os03g0696300|AK069854
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 434 e-122
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 144 5e-35
Os12g0613000 Similar to NF-YA subunit 143 1e-34
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 137 7e-33
Os07g0608200 Similar to CCAAT-binding transcription factor ... 128 4e-30
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 119 2e-27
Os12g0618600 Similar to Transcriptional activator HAP2 115 4e-26
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 89 3e-18
Os03g0647600 Similar to Nf-Y-A subunit 80 1e-15
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/258 (83%), Positives = 216/258 (83%)
Query: 1 MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTXXXXXXXXXXXXXXXXXXXISLXXXXXX 60
MESRPGGTNLVEPRGQGALPSGIPIQQPWWTT ISL
Sbjct: 1 MESRPGGTNLVEPRGQGALPSGIPIQQPWWTTSAGVGAVSPAVVAPGSGAGISLSGRDGG 60
Query: 61 XXXXXXXXXXXXXXXXXTKDGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQ 120
TKDGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQ
Sbjct: 61 GDDAAEESSDDSRRSGETKDGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQ 120
Query: 121 YPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQ 180
YPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQ
Sbjct: 121 YPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQ 180
Query: 181 SRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGEQ 240
SRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGEQ
Sbjct: 181 SRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAEPNKGEQ 240
Query: 241 NSGYRRIPPDLQLLQKET 258
NSGYRRIPPDLQLLQKET
Sbjct: 241 NSGYRRIPPDLQLLQKET 258
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 6/146 (4%)
Query: 80 DGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMS 139
DG T ++ S ++ S+ + S+ + +QP +Y Y DS+Y G V YG A+
Sbjct: 57 DGYTKSDEGKMMSALSLGKSETVYAHSEPDRSQPFG-ISYPYADSFYGGAVATYGTHAI- 114
Query: 140 AQTHFQLPG-LTHSRMPLPLE-ISEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKP 197
H Q+ G ++ SR+PLP+E +EEP+YVNAKQYH ILRRRQ RAK E E K+VK+RKP
Sbjct: 115 --MHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKP 172
Query: 198 YLHESRHQHAMRRARGTGGRFLNTKK 223
YLHESRHQHAM+RARGTGGRFLNTK+
Sbjct: 173 YLHESRHQHAMKRARGTGGRFLNTKQ 198
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 90/128 (70%), Gaps = 3/128 (2%)
Query: 98 ASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLP 157
++DY TP++ ++ + AY D YY + YG Q M H L G+ + +PLP
Sbjct: 47 STDYATPYAHHDMAHAMGQIAYANIDPYYGSLYAAYGGQPM---MHPPLVGMHPAGLPLP 103
Query: 158 LEISEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGR 217
+ EEPVYVNAKQY+ ILRRRQSRAKAE EKK+VK RKPYLHESRHQHA++RARG GGR
Sbjct: 104 TDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGR 163
Query: 218 FLNTKKNE 225
FLN+K ++
Sbjct: 164 FLNSKSDD 171
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 86 EKHHATSQMTALA-SDYLTPFSQLELNQPIASAAYQY-PDSYYMGMVGPYGPQAMSAQTH 143
E+ H T + +L ++ P S+ + NQP A +Y Y D YY G++ Y A H
Sbjct: 87 ERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAF---VH 143
Query: 144 FQLPGLTHSRMPLPLEIS-EEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHES 202
Q+ G +SRMPLP++ S EEP++VNAKQY+ ILRRRQ+RAK E + K VK RKPYLHES
Sbjct: 144 PQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHES 203
Query: 203 RHQHAMRRARGTGGRFLNTKK 223
RH HAM+RARG+GGRFL K+
Sbjct: 204 RHHHAMKRARGSGGRFLTKKE 224
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/140 (52%), Positives = 95/140 (67%), Gaps = 5/140 (3%)
Query: 107 QLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLE-ISEEPV 165
+L +Q A Y D+YY G++ Y A+ H Q G +SR+PLP+E +EEP+
Sbjct: 98 KLNYSQSFACIPYT-ADAYYGGVLTGYSSHAI---VHPQQNGTANSRVPLPVEPAAEEPI 153
Query: 166 YVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNE 225
+VNAKQYH ILRRRQ RAK E + K+VK RKPYLHESRH+HAM+RARG+GGRFLNTK+ E
Sbjct: 154 FVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFLNTKQLE 213
Query: 226 DGAPSEKAEPNKGEQNSGYR 245
+ ++ E G +SG R
Sbjct: 214 EQKQQQEEEAASGGASSGNR 233
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Query: 110 LNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNA 169
L A +Y Y +YY G G Y Q + +P HS +PL + EP+YVNA
Sbjct: 32 LGPATAPVSYPYISTYYGGTYGAYSGQPLVNAALMAMP--PHS-VPLVTDAVVEPIYVNA 88
Query: 170 KQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNE 225
+QYHGILRRRQSRAKAE E K K RKPYLHESRH HA++RARG+GGRFLN+K E
Sbjct: 89 RQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLNSKAVE 144
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 14/142 (9%)
Query: 87 KHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQL 146
+H T + + ++Y F +L L Q + + Y Y D +Y G++ PYG + +
Sbjct: 87 EHSTTIALQSPFAEYNGCF-ELGLGQSVVPSNYPYADQHY-GLLSPYGVRPTPS------ 138
Query: 147 PGLTHSRMPLPLEI-SEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQ 205
R+ +P + ++ P+YVNAKQ I+RRR +RAKAE E ++VK+RKPYLHESRH
Sbjct: 139 -----GRILIPPNMPADAPIYVNAKQCSAIIRRRHARAKAERENRLVKARKPYLHESRHL 193
Query: 206 HAMRRARGTGGRFLNTKKNEDG 227
HAMRRARG+GGRFLNTKK +G
Sbjct: 194 HAMRRARGSGGRFLNTKKETNG 215
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 15/119 (12%)
Query: 107 QLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEE--P 164
+L L + + + Y G+ PYG Q M+ RM LP I+ + P
Sbjct: 58 ELALGHSMVCTNFCNSEQSY-GVYSPYGAQTMAG------------RMLLPPAIATDVGP 104
Query: 165 VYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKK 223
+YVNAKQ++GI+RRR +RAKAE E +V +SRKPYLHESRH+HAMRRARG+GGRFLNTK
Sbjct: 105 IYVNAKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESRHRHAMRRARGSGGRFLNTKN 163
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 91/150 (60%), Gaps = 14/150 (9%)
Query: 80 DGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMS 139
D +H AT M + +Y F +L L Q + S Y D Y G++ Y ++MS
Sbjct: 103 DTGEKNREHSATIAMQSPLPEYNGHF-ELGLGQSMVSPNYPCIDQCY-GLMTTYAMKSMS 160
Query: 140 AQTHFQLPGLTHSRMPLPLEI-SEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPY 198
RM LPL ++ P+YVNAKQY GILRRR++RAKA+ E ++VK RKPY
Sbjct: 161 G-----------GRMLLPLNAPADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPY 209
Query: 199 LHESRHQHAMRRARGTGGRFLNTKKNEDGA 228
LHESRH+HAMRRARG+GGRFLNTKK A
Sbjct: 210 LHESRHRHAMRRARGSGGRFLNTKKEATAA 239
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,204,659
Number of extensions: 313662
Number of successful extensions: 750
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 9
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)