Os03g0411100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA.
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Os03g0411100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.26 | 0.436 | 12.1 | 3.82 | 0.788 | -2.49 | -0.755 | -6.27 | 0.909 | 16.3 | 1.02 | 9988 | -- | -- |
| 150.97 | 0.572 | 12.2 | 3.57 | 0.866 | -1.18 | -0.991 | -- | 0.923 | 17.4 | 4.068 | 10047 | -- | -- |
| 87.4 | 0.435 | 12.1 | 3.85 | 0.771 | -2.53 | -- | -6.48 | 0.908 | 16.1 | 1 | 9942 | -- | -- |
| 142.11 | 0.555 | 12.2 | 3.26 | 0.232 | -1.24 | -- | -- | 0.882 | 16 | 2.84 | 9411 | -- | -- |
| 104.54 | 0.476 | 12.1 | 3.35 | -- | -2.68 | -- | -5.58 | 0.915 | -- | 1.18 | 12298 | -- | -- |
| 179.04 | 0.627 | 12.1 | 2.87 | 0.733 | -- | -0.836 | -- | 1.1 | 17.1 | -- | -- | -- | -- |
| 180.48 | 0.629 | 12.2 | 2.86 | 0.735 | -- | -- | -- | 1.1 | 17.5 | -- | -- | -- | -- |
| 138.42 | 0.548 | 12.2 | 3.19 | -- | -1.86 | -- | -- | 0.767 | -- | 2.579 | 9337 | -- | -- |
| 112.2 | 0.493 | 12.4 | -- | 0.499 | -2.91 | -- | -- | 0.0441 | 12.5 | 0.0222 | 44068 | -- | -- |
| 208.55 | 0.675 | 12.1 | 2.84 | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
| 396.59 | 0.932 | 12.2 | -- | 0.688 | -- | -- | -- | 0.778 | 17.7 | -- | -- | -- | -- |
| 105.86 | 0.479 | 12.4 | -- | -- | -2.76 | -- | -- | 0.0293 | -- | 5.417e-08 | 46794 | -- | -- |
| 421.18 | 0.958 | 12.2 | -- | -- | -- | -- | -- | 0.764 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 2 | 68.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 6 | 68.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 17 | 77.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 18 | 77.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 77.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 21 | 77.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 23 | 77.27 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 30 | 77.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 79.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 76 | 80.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 80 | 80.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 82 | 80.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 93 | 81.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 100 | 81.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 102 | 81.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 125 | 81.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 127 | 81.92 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 137 | 82.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 138 | 82.11 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 169 | 82.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 170 | 82.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 180 | 82.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 214 | 83.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 216 | 83.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 220 | 83.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 281 | 83.61 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 282 | 83.61 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 286 | 83.63 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 20 |
| 301 | 83.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 354 | 84.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 401 | 84.14 | radiation | 1 | 14400 | < th | dose dependent | sin | 16 | NA |
| 405 | 84.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 423 | 84.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 460 | 84.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 470 | 84.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 541 | 84.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 554 | 84.46 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 573 | 84.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 580 | 84.51 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 588 | 84.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 593 | 84.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 731 | 84.99 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 740 | 85.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 755 | 85.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 820 | 85.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 829 | 85.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 866 | 85.74 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 915 | 85.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 940 | 86.12 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 959 | 86.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 970 | 86.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 11 |