BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0411100 Os03g0411100|AK071595
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309 131 4e-31
AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199 122 3e-28
AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329 122 3e-28
AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304 121 4e-28
AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309 120 8e-28
AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191 120 1e-27
AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273 118 5e-27
AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342 118 5e-27
AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296 93 2e-19
AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270 87 2e-17
>AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309
Length = 308
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 31 MKQLVQRNSDGDSSPTKS--GESHQEASAVSDSSLNGQHTSPQSVFVPSDINNNDSCGER 88
MKQ + DSS T+S GES+ E +++S+ + H V + ++ E
Sbjct: 46 MKQTGFQMQHYDSSSTQSTGGESYSEVASLSEPTNRYGHN-----IVVTHLSGYKENPEN 100
Query: 89 DHGTKSVLSLGNTEAAFPPSKFDYNQPFACVSYPY--GTDPYYGGVLT-GYTS-HAFVHP 144
G+ S+ + P S+P P++ G L+ Y S H HP
Sbjct: 101 PIGSHSISKVSQDSVVLP---------IEAASWPLHGNVTPHFNGFLSFPYASQHTVQHP 151
Query: 145 QITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESR 204
QI G SRMPLP + EPIFVNAKQY AILRRR+ RAKLEAQNK +K RKPYLHESR
Sbjct: 152 QIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESR 211
Query: 205 HHHAMKRARGSGGRFL 220
H HA+KR RGSGGRFL
Sbjct: 212 HLHALKRVRGSGGRFL 227
>AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199
Length = 198
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 96/154 (62%), Gaps = 8/154 (5%)
Query: 72 SVFVPSDINNNDSCGER-DHGTKSVLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYG 130
SV SD N + + ER D T+ + G + + + Y++P A YPY DPYY
Sbjct: 4 SVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSV-YSEPMAHGLYPY-PDPYYR 61
Query: 131 GVLT--GYTSHAF--VHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKL 186
V Y H + V Q+ G +PL D +VEEP+FVNAKQY+ ILRRRQ+RAKL
Sbjct: 62 SVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCD-AVEEPVFVNAKQYHGILRRRQSRAKL 120
Query: 187 EAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
EA+N+A+K +KPY+HESRH HA++R RG GGRFL
Sbjct: 121 EARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFL 154
>AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329
Length = 328
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 8/106 (7%)
Query: 117 ACVSYPYGTDPYYGGVL-TGYTSHAFV-HPQITGAANSRMPLPVDPSVEEPIFVNAKQYN 174
A S+ Y DP++GG++ Y A + +PQ+T R+PLP D EP+FVNAKQ++
Sbjct: 129 ANFSFHYA-DPHFGGLMPAAYLPQATIWNPQMT-----RVPLPFDLIENEPVFVNAKQFH 182
Query: 175 AILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
AI+RRRQ RAKLEAQNK +K RKPYLHESRH HA+KR RGSGGRFL
Sbjct: 183 AIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFL 228
>AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304
Length = 303
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 120 SYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRR 179
S PY DPYY GV+ Y H G +SRMPLP + +EP+FVNAKQY AILRR
Sbjct: 124 SNPY-QDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPE-MAQEPVFVNAKQYQAILRR 181
Query: 180 RQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTK 222
RQ RAK E + K +K RKPYLHESRH HAM+R RG+GGRF K
Sbjct: 182 RQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKK 224
>AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309
Length = 308
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 77 SDINNNDSCGERDHG------TKSVL--SLGNTEAAFP-PSKFDYNQPFACVSYPYGTDP 127
S +NNN S + G TKS+ S+ + ++ FP P+ + C T
Sbjct: 84 SIVNNNLSGYIENLGKPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAE----TSH 139
Query: 128 YYGGVLTGYTSH--AFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAK 185
+ G + Y S A H ++ G +SR+PLP EPIFVNAKQY+AILRRR+ RAK
Sbjct: 140 FNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAK 199
Query: 186 LEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
LEAQNK +K RKPYLHESRH HA+KRARGSGGRFL
Sbjct: 200 LEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFL 234
>AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191
Length = 190
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 74/104 (71%), Gaps = 9/104 (8%)
Query: 121 YPYGTDPYYGGVLTG----YTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAI 176
YPY DPYY + YT VH Q+ G +PLP D +VEEP+FVNAKQY+ I
Sbjct: 58 YPY-PDPYYRSIFAPPPQPYTG---VHLQLMGVQQQGVPLPSD-AVEEPVFVNAKQYHGI 112
Query: 177 LRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
LRRRQ+RA+LE+QNK +K RKPYLHESRH HA++R RG GGRFL
Sbjct: 113 LRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFL 156
>AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273
Length = 272
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 50 ESHQEASAVSDSSLNGQH--TSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTEAAFPP 107
ES+ SA D +LNG++ T S S + ++ E + S+ ++ + PP
Sbjct: 60 ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPP 119
Query: 108 SKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIF 167
+ ACV PY DPYYGG++ Y G R LP+D +EP++
Sbjct: 120 ELVGHY--IACVPNPY-QDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLD-MAQEPVY 175
Query: 168 VNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTK 222
VNAKQY ILRRR+ RAK E + K ++ RKPYLHESRH HAM+RAR SGGRF K
Sbjct: 176 VNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKK 230
>AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342
Length = 341
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 4/107 (3%)
Query: 117 ACVSYPYGTDPYYGGVLTG-YTSHA-FVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYN 174
A S+ Y DP+YGG+L Y A +PQ+ R+PLP + + +P+FVNAKQY+
Sbjct: 131 ANFSFHYA-DPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYH 189
Query: 175 AILRRRQTRAKLEAQNKAVKGRK-PYLHESRHHHAMKRARGSGGRFL 220
AI+RRRQ RAKLEAQNK ++ RK PYLHESRH HA+KR RGSGGRFL
Sbjct: 190 AIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFL 236
>AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296
Length = 295
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 73/120 (60%), Gaps = 18/120 (15%)
Query: 106 PPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEP 165
P + ++QP YPYG YYG V++ Y S SR+ LP++ E+
Sbjct: 90 PCLELGFSQPPIYTKYPYGEQQYYG-VVSAYGSQ------------SRVMLPLNMETEDS 136
Query: 166 -IFVNAKQYNAILRRRQTRAK----LEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
I+VN+KQY+ I+RRRQ+RAK L+ + + + RKPY+H SRH HA++R RGSGGRFL
Sbjct: 137 TIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFL 196
>AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270
Length = 269
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 16/114 (14%)
Query: 109 KFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEE--PI 166
+F + QP +P+ + YYG V++ Y S ++ R+ +P+ EE I
Sbjct: 88 EFGFAQPMMYTKHPH-VEQYYG-VVSAYGSQR---------SSGRVMIPLKMETEEDGTI 136
Query: 167 FVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
+VN+KQY+ I+RRRQ+RAK E K + RKPY+H SRH HAM+R RGSGGRFL
Sbjct: 137 YVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFL 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,158,848
Number of extensions: 240375
Number of successful extensions: 764
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 10
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)