BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0411100 Os03g0411100|AK071595
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 548 e-156
Os07g0608200 Similar to CCAAT-binding transcription factor ... 252 3e-67
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 183 2e-46
Os12g0613000 Similar to NF-YA subunit 137 1e-32
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 135 5e-32
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 117 1e-26
Os12g0618600 Similar to Transcriptional activator HAP2 97 1e-20
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 69 4e-12
Os03g0647600 Similar to Nf-Y-A subunit 69 5e-12
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/317 (84%), Positives = 269/317 (84%)
Query: 1 MIMLLQEMENHPVQCMAKTNYDFLARNNYPMKQLVQRNSDGDSSPTKSGESHQEASAVSD 60
MIMLLQEMENHPVQCMAKTNYDFLARNNYPMKQLVQRNSDGDSSPTKSGESHQEASAVSD
Sbjct: 1 MIMLLQEMENHPVQCMAKTNYDFLARNNYPMKQLVQRNSDGDSSPTKSGESHQEASAVSD 60
Query: 61 SSLNGQHTSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVS 120
SSLNGQHTSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVS
Sbjct: 61 SSLNGQHTSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVS 120
Query: 121 YPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRR 180
YPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRR
Sbjct: 121 YPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRR 180
Query: 181 QTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTKXXXXXXXXXXXXXXXXXX 240
QTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTK
Sbjct: 181 QTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFLTKKELLEQQQQQQQQKPPPA 240
Query: 241 XXXXXTGRARTSGGAVVLGKNLCXXXXXXXXXXXXXXXXXXXXXXXXXMLAHQEHISFAS 300
TGRARTSGGAVVLGKNLC MLAHQEHISFAS
Sbjct: 241 SAQSPTGRARTSGGAVVLGKNLCPENSTSCSPSTPTGSEISSISFGGGMLAHQEHISFAS 300
Query: 301 ADRHPTMNQNHRVPVMR 317
ADRHPTMNQNHRVPVMR
Sbjct: 301 ADRHPTMNQNHRVPVMR 317
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/220 (62%), Positives = 163/220 (74%), Gaps = 13/220 (5%)
Query: 1 MIMLLQEMENHPVQCMAKTNYDFLARNNYPMKQLVQRNSDGDSSPTKSGESHQEASAVSD 60
M+MLL++ME+H + NYDF + +Y MKQL + D DS + SG+SHQE SA++D
Sbjct: 1 MLMLLRQMEDH--RAHTTPNYDFFS-GDYQMKQLGHKMYDQDSPSSDSGQSHQEESAMND 57
Query: 61 SSLNGQHTSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVS 120
SS N +HTS QS D ++ ++D TKSV SLGN A PP K +Y+Q FAC+
Sbjct: 58 SSPNERHTSTQS-----DNDDGHQMPDQDK-TKSVSSLGNP-GALPP-KLNYSQSFACI- 108
Query: 121 YPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRR 180
PY D YYGGVLTGY+SHA VHPQ G ANSR+PLPV+P+ EEPIFVNAKQY+AILRRR
Sbjct: 109 -PYTADAYYGGVLTGYSSHAIVHPQQNGTANSRVPLPVEPAAEEPIFVNAKQYHAILRRR 167
Query: 181 QTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
Q RAKLEAQNK VKGRKPYLHESRH HAMKRARGSGGRFL
Sbjct: 168 QIRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFL 207
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 131/206 (63%), Gaps = 26/206 (12%)
Query: 24 LARNNYPMKQLVQRNSDGDSSPTKSGE-SHQEASAVSDSSLNGQHTSPQSVFVPSDINNN 82
L N M Q + D +SS T+S S +E S +S+ SLN Q N
Sbjct: 6 LTENGTVMIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQ---------------N 50
Query: 83 DSCGERDHGTKS-------VLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTG 135
D G D TKS LSLG +E + S+ D +QPF +SYPY D +YGG +
Sbjct: 51 DQSGNLDGYTKSDEGKMMSALSLGKSETVYAHSEPDRSQPFG-ISYPY-ADSFYGGAVAT 108
Query: 136 YTSHAFVHPQITGA-ANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVK 194
Y +HA +HPQI G ++SR+PLP++P+ EEPI+VNAKQY+AILRRRQ RAKLEA+NK VK
Sbjct: 109 YGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVK 168
Query: 195 GRKPYLHESRHHHAMKRARGSGGRFL 220
RKPYLHESRH HAMKRARG+GGRFL
Sbjct: 169 NRKPYLHESRHQHAMKRARGTGGRFL 194
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 2/127 (1%)
Query: 94 SVLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSR 153
++++ +T+ A P + D ++Y DPYYG + Y +HP + G +
Sbjct: 41 TMVATPSTDYATPYAHHDMAHAMGQIAYA-NIDPYYGSLYAAYGGQPMMHPPLVGMHPAG 99
Query: 154 MPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRAR 213
+PLP D ++EEP++VNAKQYNAILRRRQ+RAK E++ K VKGRKPYLHESRH HA+KRAR
Sbjct: 100 LPLPTD-AIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRAR 158
Query: 214 GSGGRFL 220
G+GGRFL
Sbjct: 159 GAGGRFL 165
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 93/137 (67%), Gaps = 6/137 (4%)
Query: 87 ERDHGTKSVLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAF---VH 143
E+ H T + +L ++ P S+ + NQP A +Y Y D YY G++ Y A H
Sbjct: 86 EKHHATSQMTALA-SDYLTPFSQLELNQPIASAAYQY-PDSYYMGMVGPYGPQAMSAQTH 143
Query: 144 PQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHES 203
Q+ G +SRMPLP++ S EEP++VNAKQY+ ILRRRQ+RAK E + K VK RKPYLHES
Sbjct: 144 FQLPGLTHSRMPLPLEIS-EEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHES 202
Query: 204 RHHHAMKRARGSGGRFL 220
RH HAM+RARG+GGRFL
Sbjct: 203 RHQHAMRRARGTGGRFL 219
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 117 ACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAI 176
A VSYPY YYGG Y+ V+ + +PL D +V EPI+VNA+QY+ I
Sbjct: 37 APVSYPY-ISTYYGGTYGAYSGQPLVNAALMAMPPHSVPLVTD-AVVEPIYVNARQYHGI 94
Query: 177 LRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
LRRRQ+RAK E++NKA K RKPYLHESRH HA+KRARGSGGRFL
Sbjct: 95 LRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFL 138
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 10/100 (10%)
Query: 121 YPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDPSVEEPIFVNAKQYNAILRRR 180
YPY Y G+L+ Y V P +G R+ +P + + PI+VNAKQ +AI+RRR
Sbjct: 118 YPYADQHY--GLLSPYG----VRPTPSG----RILIPPNMPADAPIYVNAKQCSAIIRRR 167
Query: 181 QTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGRFL 220
RAK E +N+ VK RKPYLHESRH HAM+RARGSGGRFL
Sbjct: 168 HARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFL 207
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 5/71 (7%)
Query: 153 RMPLPVDPSVEE---PIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAM 209
RM LP P++ PI+VNAKQ+N I+RRR RAK E +++ + RKPYLHESRH HAM
Sbjct: 91 RMLLP--PAIATDVGPIYVNAKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESRHRHAM 148
Query: 210 KRARGSGGRFL 220
+RARGSGGRFL
Sbjct: 149 RRARGSGGRFL 159
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%)
Query: 150 ANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAM 209
+ RM LP++ + PI+VNAKQY ILRRR+ RAK + +N+ VKGRKPYLHESRH HAM
Sbjct: 160 SGGRMLLPLNAPADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAM 219
Query: 210 KRARGSGGRFL 220
+RARGSGGRFL
Sbjct: 220 RRARGSGGRFL 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,959,855
Number of extensions: 388145
Number of successful extensions: 1164
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 9
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)