FiT-DB / Search/ Help/ Sample detail

Os12g0613000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NF-YA subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.014) R2 : 0.709
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.2 (0.0365) R2dC : 0.69 R2C : 0.685
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0295) R2dN8 : 0.0246 R2N8 : 0.0197
σ : 0.264
deviance : 31.94
__
_____
C
peak time of C : 6.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.46 0.232 10.4 0.495 1.2 -0.858 -0.551 -2.98 0.239 6.96 20.55 5727 -- --
26.84 0.243 10.5 0.428 1.19 0.4 -0.552 -- 0.228 7.05 20.55 5727 -- --
25.15 0.234 10.4 0.477 1.19 -0.866 -- -2.99 0.233 6.94 20.62 6230 -- --
26.89 0.242 10.5 0.582 1.19 0.391 -- -- 0.246 6.88 14.5 10689 -- --
99.97 0.466 10.4 0.503 -- -0.953 -- -3.38 0.285 -- 19.69 6232 -- --
27.98 0.248 10.5 0.362 1.2 -- -0.512 -- 0.199 6.95 -- -- -- --
28.66 0.251 10.5 0.353 1.19 -- -- -- 0.2 6.94 -- -- -- --
101.64 0.47 10.5 0.597 -- 0.342 -- -- 0.286 -- 14.5 13322 -- --
30.48 0.257 10.5 -- 1.19 -0.284 -- -- 0.123 6.96 35.76 1405 -- --
103.53 0.475 10.5 0.378 -- -- -- -- 0.223 -- -- -- -- --
31.94 0.264 10.5 -- 1.2 -- -- -- 0.161 6.92 -- -- -- --
103.42 0.474 10.5 -- -- -0.316 -- -- 0.0862 -- 35.7 47520 -- --
107.29 0.483 10.5 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.43 temperature 15.0 270 > th dose independent rect. 19 7
2 19.68 temperature 15.0 270 > th dose independent rect. 6 21
3 19.72 temperature 15.0 270 > th dose independent rect. 7 19
4 19.73 temperature 15.0 270 > th dose independent rect. 9 16
12 20.29 temperature 15.0 270 > th dose independent rect. 21 16
15 20.36 temperature 10.0 270 > th dose dependent rect. 19 7
28 20.75 temperature 15.0 90 > th dose independent rect. 11 16
43 21.10 temperature 10.0 270 > th dose dependent rect. 22 3
45 21.11 radiation 40.0 270 < th dose dependent rect. 2 7
55 21.24 temperature 15.0 270 > th dose independent rect. 23 1
76 21.46 temperature 15.0 10 > th dose independent rect. 20 9
78 21.47 temperature 15.0 270 > th dose dependent rect. 23 1
82 21.52 wind 7.0 270 < th dose independent rect. 15 15
87 21.54 radiation 20.0 270 < th dose independent rect. 2 7
98 21.63 humidity 50.0 270 > th dose dependent rect. 2 9
99 21.64 atmosphere 1010.0 270 < th dose independent rect. 19 7
100 21.64 radiation 40.0 270 < th dose independent rect. 2 17
104 21.65 humidity 50.0 270 > th dose dependent rect. 2 7
118 21.73 radiation 1.0 270 < th dose independent rect. 3 8
122 21.75 wind 9.0 270 < th dose dependent rect. 3 3
130 21.78 radiation 40.0 90 < th dose independent rect. 4 15
136 21.80 atmosphere 1010.0 270 < th dose independent rect. 22 3
138 21.80 temperature 15.0 270 > th dose independent rect. 6 9
140 21.81 precipitation 0.1 270 < th dose independent rect. 19 7
143 21.81 precipitation 0.1 270 < th dose dependent rect. 19 7
144 21.82 wind 7.0 270 < th dose independent rect. 3 3
147 21.82 precipitation 0.1 90 < th dose independent rect. 19 9
148 21.82 precipitation 0.1 90 < th dose dependent rect. 19 9
153 21.83 radiation 1.0 270 < th dose dependent rect. 3 8
155 21.84 precipitation 0.1 90 < th dose independent rect. 4 15
157 21.84 precipitation 0.1 90 < th dose dependent rect. 4 15
160 21.85 temperature 30.0 270 < th dose independent rect. 19 7
161 21.85 humidity 50.0 270 > th dose independent rect. 19 7
162 21.85 atmosphere 995.0 270 > th dose independent rect. 19 7
164 21.85 radiation 1.0 270 < th dose independent rect. 19 7
170 21.85 temperature 10.0 270 > th dose independent rect. 2 17
171 21.85 atmosphere 1015.0 270 < th dose independent rect. 2 17
173 21.85 radiation 1.0 270 < th dose dependent rect. 19 7
179 21.85 radiation 40.0 90 < th dose dependent rect. 4 15
182 21.86 wind 9.0 270 < th dose independent rect. 6 9
187 21.88 temperature 10.0 270 > th dose independent rect. 3 3
189 21.88 temperature 30.0 270 < th dose independent rect. 3 3
190 21.88 humidity 50.0 270 > th dose independent rect. 3 3
194 21.88 atmosphere 995.0 270 > th dose independent rect. 3 3
195 21.88 atmosphere 1015.0 270 < th dose independent rect. 3 3
196 21.88 radiation 20.0 270 < th dose independent rect. 3 3
199 21.88 wind 9.0 270 < th dose independent rect. 2 17
201 21.88 radiation 40.0 90 < th dose independent rect. 4 17
203 21.88 precipitation 0.1 270 < th dose independent rect. 6 21
204 21.88 precipitation 0.1 270 < th dose dependent rect. 6 21
206 21.89 atmosphere 1010.0 30 < th dose independent rect. 23 5
215 21.90 temperature 30.0 90 < th dose independent rect. 19 9
216 21.90 humidity 50.0 90 > th dose independent rect. 19 9
218 21.90 atmosphere 995.0 90 > th dose independent rect. 19 9
219 21.90 radiation 1.0 90 < th dose independent rect. 19 9
224 21.90 temperature 10.0 90 > th dose independent rect. 4 15
225 21.90 atmosphere 1015.0 90 < th dose independent rect. 4 15
226 21.90 radiation 40.0 90 < th dose independent rect. 4 19
229 21.90 radiation 1.0 90 < th dose dependent rect. 19 9
234 21.91 wind 9.0 270 < th dose independent rect. 19 7
236 21.91 radiation 40.0 270 < th dose dependent rect. 3 3
247 21.93 wind 9.0 90 < th dose independent rect. 19 9
251 21.94 precipitation 0.1 270 < th dose independent rect. 2 17
253 21.94 wind 9.0 270 < th dose dependent rect. 2 5
254 21.94 precipitation 0.1 270 < th dose dependent rect. 2 17
258 21.96 precipitation 0.1 270 < th dose independent rect. 6 9
260 21.96 precipitation 0.1 270 < th dose dependent rect. 6 9
265 21.97 humidity 50.0 270 > th dose dependent rect. 3 3
267 21.98 precipitation 0.1 270 < th dose independent rect. 3 3
270 21.98 atmosphere 995.0 270 > th dose independent rect. 6 9
271 21.98 precipitation 0.1 270 < th dose dependent rect. 3 3
289 22.01 atmosphere 1015.0 270 < th dose independent rect. 6 9
290 22.01 temperature 10.0 270 > th dose independent rect. 15 15
292 22.02 atmosphere 1010.0 270 < th dose independent rect. 23 1
297 22.03 precipitation 0.1 270 < th dose independent rect. 7 19
303 22.03 precipitation 0.1 270 < th dose dependent rect. 7 19
307 22.05 temperature 10.0 270 > th dose independent rect. 2 5
309 22.05 temperature 30.0 270 < th dose independent rect. 2 5
310 22.05 humidity 50.0 270 > th dose independent rect. 2 5
312 22.05 atmosphere 995.0 270 > th dose independent rect. 2 5
313 22.05 atmosphere 1015.0 270 < th dose independent rect. 2 5
325 22.06 radiation 1.0 270 > th dose independent rect. 6 9
328 22.06 wind 9.0 270 < th dose independent rect. 6 21
338 22.08 radiation 1.0 270 < th dose independent rect. 3 3
351 22.08 radiation 40.0 270 < th dose independent rect. 15 15
362 22.10 wind 9.0 90 < th dose independent rect. 4 15
391 22.13 precipitation 0.1 270 < th dose independent rect. 2 5
403 22.13 humidity 80.0 270 > th dose independent rect. 2 7
408 22.13 precipitation 0.1 270 < th dose dependent rect. 2 5
414 22.13 radiation 40.0 90 < th dose dependent rect. 4 7
428 22.16 radiation 40.0 90 < th dose dependent rect. 4 19
434 22.17 wind 9.0 270 < th dose independent rect. 7 19
443 22.18 radiation 40.0 270 < th dose dependent rect. 2 17
487 22.22 atmosphere 995.0 270 > th dose independent rect. 2 17
508 22.25 radiation 40.0 90 < th dose dependent rect. 4 5
511 22.26 humidity 60.0 270 > th dose independent rect. 1 8
516 22.27 wind 7.0 270 < th dose independent rect. 1 8
538 22.31 precipitation 0.1 270 < th dose independent rect. 15 15
539 22.31 precipitation 0.1 270 < th dose independent rect. 9 16
542 22.31 precipitation 0.1 270 < th dose dependent rect. 15 15
543 22.31 precipitation 0.1 270 < th dose dependent rect. 9 16
555 22.33 temperature 10.0 270 > th dose independent rect. 1 8
558 22.33 atmosphere 995.0 270 > th dose independent rect. 1 8
559 22.33 atmosphere 1015.0 270 < th dose independent rect. 1 8
575 22.35 temperature 30.0 270 < th dose independent rect. 1 8
582 22.36 atmosphere 995.0 270 > th dose independent rect. 7 19
583 22.36 atmosphere 995.0 270 > th dose independent rect. 6 21
586 22.37 precipitation 0.1 270 < th dose independent rect. 22 3
594 22.37 precipitation 0.1 270 < th dose dependent rect. 22 3
597 22.38 temperature 30.0 270 < th dose independent rect. 22 3
598 22.38 humidity 50.0 270 > th dose independent rect. 22 3
601 22.38 atmosphere 995.0 270 > th dose independent rect. 22 3
602 22.38 radiation 1.0 270 < th dose independent rect. 22 3
610 22.38 temperature 10.0 270 > th dose independent rect. 1 21
611 22.38 radiation 1.0 270 < th dose dependent rect. 22 3
623 22.39 wind 9.0 270 < th dose independent rect. 22 3
655 22.41 temperature 10.0 270 > th dose dependent rect. 3 3
657 22.41 humidity 50.0 90 > th dose dependent rect. 4 5
660 22.41 radiation 10.0 270 < th dose dependent rect. 2 17
672 22.43 precipitation 0.1 270 < th dose independent rect. 1 8
680 22.43 precipitation 0.1 270 < th dose dependent rect. 1 8
705 22.44 atmosphere 1015.0 270 < th dose dependent rect. 21 4
756 22.46 atmosphere 995.0 270 > th dose independent rect. 15 15
758 22.46 wind 9.0 270 < th dose independent rect. 1 21
776 22.47 atmosphere 995.0 90 > th dose independent rect. 4 15
820 22.52 humidity 50.0 90 > th dose dependent rect. 4 15
834 22.53 wind 9.0 270 < th dose independent rect. 13 8
836 22.53 wind 1.0 270 > th dose independent rect. 6 9
852 22.54 wind 9.0 270 < th dose independent rect. 9 16
884 22.56 wind 9.0 270 < th dose independent rect. 21 16
889 22.57 temperature 15.0 10 > th dose independent rect. 23 16
891 22.57 humidity 50.0 270 > th dose independent rect. 8 18
898 22.58 precipitation 0.1 270 < th dose independent rect. 21 16
909 22.58 precipitation 0.1 270 < th dose dependent rect. 21 16
918 22.59 atmosphere 995.0 270 > th dose independent rect. 9 16
921 22.59 precipitation 0.1 270 < th dose independent rect. 1 21
924 22.59 precipitation 0.1 270 < th dose dependent rect. 1 21
930 22.60 radiation 1.0 270 < th dose independent rect. 2 17
968 22.64 humidity 80.0 90 > th dose independent rect. 4 7
979 22.65 humidity 50.0 270 > th dose independent rect. 6 21
985 22.66 humidity 50.0 270 > th dose independent rect. 6 9