BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0613000 Os12g0613000|AK065163
(217 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0613000 Similar to NF-YA subunit 379 e-105
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 141 3e-34
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 139 1e-33
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 139 2e-33
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 136 1e-32
Os07g0608200 Similar to CCAAT-binding transcription factor ... 127 8e-30
Os12g0618600 Similar to Transcriptional activator HAP2 100 1e-21
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 83 2e-16
Os03g0647600 Similar to Nf-Y-A subunit 67 9e-12
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/217 (85%), Positives = 186/217 (85%)
Query: 1 MTSVVHDVSGNHGADERQKQQRQGEPEDQQEASVTSTDSHTMVATPSTDYATPYAHHDMA 60
MTSVVHDVSGNHGADERQKQQRQGEPEDQQEASVTSTDSHTMVATPSTDYATPYAHHDMA
Sbjct: 1 MTSVVHDVSGNHGADERQKQQRQGEPEDQQEASVTSTDSHTMVATPSTDYATPYAHHDMA 60
Query: 61 HAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNA 120
HAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNA
Sbjct: 61 HAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNA 120
Query: 121 ILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLNXXXXXXXXXXXXXX 180
ILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN
Sbjct: 121 ILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLNSKSDDKEEHSDSSS 180
Query: 181 XXXQDGVAPRDSGQXXXXXXXXXXXXXXQNKKSKTSN 217
QDGVAPRDSGQ QNKKSKTSN
Sbjct: 181 RDKQDGVAPRDSGQPSTSPSSKGASSAKQNKKSKTSN 217
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 81/108 (75%)
Query: 59 MAHAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQY 118
+ A ++Y I YYG Y AY GQP+++ L+ M P +PL TDA+ EP+YVNA+QY
Sbjct: 32 LGPATAPVSYPYISTYYGGTYGAYSGQPLVNAALMAMPPHSVPLVTDAVVEPIYVNARQY 91
Query: 119 NAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN 166
+ ILRRRQSRAKAESE K K RKPYLHESRH HALKRARG+GGRFLN
Sbjct: 92 HGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLN 139
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 101/164 (61%), Gaps = 5/164 (3%)
Query: 7 DVSGNHGADERQK-QQRQGEPEDQQEASVTSTDSHTMVATPSTDYATPYAHHDMAHAMGQ 65
D G+ A+E +R GE +D + M A ++DY TP++ ++ +
Sbjct: 58 DGGGDDAAEESSDDSRRSGETKDGSTDQEKHHATSQMTAL-ASDYLTPFSQLELNQPIAS 116
Query: 66 IAYANIDPYYGSLYAAYGGQPM---MHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNAIL 122
AY D YY + YG Q M H L G+ + +PLP + EEPVYVNAKQY+ IL
Sbjct: 117 AAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGIL 176
Query: 123 RRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN 166
RRRQSRAKAE EKK+VK RKPYLHESRHQHA++RARG GGRFLN
Sbjct: 177 RRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLN 220
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 94/137 (68%), Gaps = 6/137 (4%)
Query: 35 TSTDSHTMVATPSTDYA-TPYAHH--DMAHAMGQIAYANIDPYYGSLYAAYGGQPMMHPP 91
T +D M++ S + T YAH D + G I+Y D +YG A YG +MHP
Sbjct: 60 TKSDEGKMMSALSLGKSETVYAHSEPDRSQPFG-ISYPYADSFYGGAVATYGTHAIMHPQ 118
Query: 92 LVG-MHPAGLPLPTD-AIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESR 149
+VG M + +PLP + A EEP+YVNAKQY+AILRRRQ RAK E+E KLVK RKPYLHESR
Sbjct: 119 IVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESR 178
Query: 150 HQHALKRARGAGGRFLN 166
HQHA+KRARG GGRFLN
Sbjct: 179 HQHAMKRARGTGGRFLN 195
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 2/127 (1%)
Query: 41 TMVATPSTDYATPYAHHDMAHAMGQIAYA-NIDPYYGSLYAAYGGQPMMHPPLVGMHPAG 99
++++ +T+ A P + D ++Y DPYYG + Y +HP + G +
Sbjct: 94 SVLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSR 153
Query: 100 LPLPTD-AIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRAR 158
+PLP D ++EEP++VNAKQYNAILRRRQ+RAK E++ K VKGRKPYLHESRH HA+KRAR
Sbjct: 154 MPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRAR 213
Query: 159 GAGGRFL 165
G+GGRFL
Sbjct: 214 GSGGRFL 220
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
Query: 72 DPYYGSLYAAYGGQPMMHPPLVGMHPAGLPLPTD-AIEEPVYVNAKQYNAILRRRQSRAK 130
D YYG + Y ++HP G + +PLP + A EEP++VNAKQY+AILRRRQ RAK
Sbjct: 113 DAYYGGVLTGYSSHAIVHPQQNGTANSRVPLPVEPAAEEPIFVNAKQYHAILRRRQIRAK 172
Query: 131 AESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN 166
E++ KLVKGRKPYLHESRH+HA+KRARG+GGRFLN
Sbjct: 173 LEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFLN 208
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 24/126 (19%)
Query: 52 TPYAHHDMAHAMGQ------IAYANIDPYYGSLYAAYGGQP-----MMHPPLVGMHPAGL 100
+P+A ++ +G Y D +YG L + YG +P ++ PP
Sbjct: 96 SPFAEYNGCFELGLGQSVVPSNYPYADQHYG-LLSPYGVRPTPSGRILIPPN-------- 146
Query: 101 PLPTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGA 160
+P DA P+YVNAKQ +AI+RRR +RAKAE E +LVK RKPYLHESRH HA++RARG+
Sbjct: 147 -MPADA---PIYVNAKQCSAIIRRRHARAKAERENRLVKARKPYLHESRHLHAMRRARGS 202
Query: 161 GGRFLN 166
GGRFLN
Sbjct: 203 GGRFLN 208
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 16/112 (14%)
Query: 59 MAHAMGQIAYANIDPYYGSLYAAYGGQPM----MHPPLVGMHPAGLPLPTDAIEEPVYVN 114
+ H+M + N + YG +Y+ YG Q M + PP + TD P+YVN
Sbjct: 61 LGHSMVCTNFCNSEQSYG-VYSPYGAQTMAGRMLLPPAIA---------TDV--GPIYVN 108
Query: 115 AKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLN 166
AKQ+N I+RRR +RAKAE E ++ + RKPYLHESRH+HA++RARG+GGRFLN
Sbjct: 109 AKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESRHRHAMRRARGSGGRFLN 160
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 59/69 (85%), Gaps = 5/69 (7%)
Query: 100 LPL--PTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRA 157
LPL P DA P+YVNAKQY ILRRR++RAKA+ E +LVKGRKPYLHESRH+HA++RA
Sbjct: 166 LPLNAPADA---PIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRA 222
Query: 158 RGAGGRFLN 166
RG+GGRFLN
Sbjct: 223 RGSGGRFLN 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,076,080
Number of extensions: 296784
Number of successful extensions: 924
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 9
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)