FiT-DB / Search/ Help/ Sample detail

Os08g0196700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0274) R2 : 0.724
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.58 (0.067) R2dC : 0.341 R2C : 0.368
β3 : 2.19 (0.0916) R2dE : 0.355 R2E : 0.383
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00449 (0.0584) R2dN8 : 8.69e-06 R2N8 : -0.00163
σ : 0.51
deviance : 120.11
__
_____
C
peak time of C : 9.49
E
wheather : temperature
threshold : 15.9
memory length : 26
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.2
open length of G : 20.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.21 0.513 11.5 -0.141 1.59 2.22 0.43 -0.491 -0.0212 9.44 15.76 27 6.1 20.6
119.5 0.509 11.5 -0.086 1.58 2.21 0.378 -- -0.00717 9.42 15.9 26 6.17 20.6
119.85 0.51 11.5 -0.106 1.58 2.21 -- -0.325 -0.0146 9.45 15.88 26 6.16 20.6
119.98 0.51 11.5 -0.0789 1.58 2.19 -- -- -0.00676 9.48 15.94 26 6.2 20.5
174.6 0.619 11.5 -0.0933 -- 2.47 -- -0.678 0.173 -- 17.7 3 5.32 13.6
188.57 0.644 11.4 0.298 1.94 -- 0.182 -- 0.344 12 -- -- -- --
188.71 0.643 11.4 0.305 1.94 -- -- -- 0.345 12 -- -- -- --
159.26 0.588 11.5 0.134 -- 2.43 -- -- 0.201 -- 16.09 6 6.28 12.3
120.11 0.51 11.4 -- 1.58 2.19 -- -- 0.00449 9.49 15.9 26 6.2 20.5
426 0.964 11.4 0.245 -- -- -- -- 0.318 -- -- -- -- --
191.17 0.647 11.4 -- 1.94 -- -- -- 0.311 12 -- -- -- --
158.38 0.586 11.5 -- -- 2.39 -- -- 0.159 -- 15.29 7 6.33 12.3
427.58 0.965 11.4 -- -- -- -- -- 0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.89 temperature 15 30 > th dose dependent rect. 6 20
21 127.03 temperature 30 10 < th dose dependent rect. 2 18
31 128.19 temperature 30 10 < th dose dependent rect. 4 16
50 130.65 temperature 25 90 < th dose independent rect. 3 18
84 132.92 temperature 20 10 > th dose dependent rect. 6 13
90 133.11 temperature 30 10 < th dose dependent sin 2 NA
114 133.98 temperature 15 10 > th dose dependent sin 2 NA
120 134.23 temperature 25 90 < th dose independent rect. 1 22
162 135.09 temperature 30 10 < th dose dependent rect. 24 21
167 135.42 temperature 30 10 < th dose dependent rect. 24 23
236 136.81 temperature 20 10 > th dose dependent rect. 15 23
348 139.23 temperature 20 10 > th dose dependent no NA NA
351 139.31 temperature 25 30 > th dose independent sin 2 NA
387 139.89 temperature 25 90 > th dose independent rect. 6 5
413 140.33 temperature 25 90 < th dose independent sin 4 NA
419 140.40 temperature 20 10 > th dose dependent rect. 13 23
449 140.96 temperature 25 30 > th dose independent rect. 6 13
454 141.03 temperature 20 10 > th dose dependent rect. 20 23
461 141.17 temperature 30 10 < th dose dependent rect. 9 23
463 141.20 temperature 20 90 > th dose dependent rect. 6 5
470 141.33 temperature 20 10 > th dose dependent rect. 23 23
510 141.82 temperature 25 10 > th dose dependent sin 8 NA
544 142.32 temperature 30 10 < th dose dependent rect. 11 23
548 142.33 temperature 20 10 > th dose dependent rect. 1 23
599 143.22 temperature 30 10 < th dose dependent no NA NA
622 143.43 temperature 30 10 < th dose dependent rect. 13 23
643 143.74 temperature 25 90 > th dose independent rect. 20 23
684 144.15 temperature 30 30 < th dose dependent rect. 7 23
686 144.20 temperature 25 10 > th dose independent rect. 6 19
698 144.32 temperature 30 10 < th dose dependent rect. 15 23
721 144.58 temperature 30 10 < th dose dependent rect. 19 23
723 144.60 temperature 30 10 < th dose dependent rect. 17 23
735 144.72 temperature 20 10 > th dose dependent rect. 17 23
762 145.06 temperature 25 10 > th dose dependent rect. 15 21
790 145.45 temperature 25 90 < th dose independent rect. 21 23
812 145.66 temperature 25 30 > th dose independent rect. 6 16
819 145.70 temperature 25 90 < th dose independent rect. 9 23
827 145.78 radiation 1 270 < th dose dependent rect. 22 23
828 145.79 temperature 20 270 > th dose dependent rect. 6 2
847 145.95 radiation 1 270 > th dose independent rect. 17 23
849 145.95 temperature 30 10 < th dose dependent rect. 21 23
884 146.27 temperature 25 30 > th dose independent rect. 15 23
896 146.33 temperature 25 90 > th dose independent rect. 24 23
899 146.37 temperature 25 90 > th dose independent rect. 22 23
900 146.40 temperature 25 90 > th dose independent no NA NA
904 146.43 temperature 25 90 < th dose independent no NA NA
983 147.11 temperature 20 10 > th dose dependent rect. 6 6
996 147.22 temperature 25 90 < th dose independent rect. 15 23
1000 147.24 temperature 25 90 > th dose independent rect. 13 23