BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0196700 Os08g0196700|AK059903
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 348 2e-96
Os12g0613000 Similar to NF-YA subunit 135 2e-32
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 109 1e-24
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 107 8e-24
Os07g0608200 Similar to CCAAT-binding transcription factor ... 103 8e-23
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 103 9e-23
Os12g0618600 Similar to Transcriptional activator HAP2 97 6e-21
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 80 7e-16
Os03g0647600 Similar to Nf-Y-A subunit 64 9e-11
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 348 bits (892), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/193 (90%), Positives = 175/193 (90%)
Query: 1 MKPDGETQLRPTAAGHPDPGLGTSSAEYVASLGPATAPVXXXXXXXXXXXXXXXXXXQPL 60
MKPDGETQLRPTAAGHPDPGLGTSSAEYVASLGPATAPV QPL
Sbjct: 1 MKPDGETQLRPTAAGHPDPGLGTSSAEYVASLGPATAPVSYPYISTYYGGTYGAYSGQPL 60
Query: 61 VNAALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHE 120
VNAALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHE
Sbjct: 61 VNAALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHE 120
Query: 121 SRHLHALKRARGSGGRFLNSKAVEGKQDTKSVDKKDGAVPSEEKRDKKLANSIIKLENSS 180
SRHLHALKRARGSGGRFLNSKAVEGKQDTKSVDKKDGAVPSEEKRDKKLANSIIKLENSS
Sbjct: 121 SRHLHALKRARGSGGRFLNSKAVEGKQDTKSVDKKDGAVPSEEKRDKKLANSIIKLENSS 180
Query: 181 PTTQPGADASDVV 193
PTTQPGADASDVV
Sbjct: 181 PTTQPGADASDVV 193
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 83/105 (79%), Gaps = 2/105 (1%)
Query: 58 QPLVNAALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPY 117
QP+++ L+ M P +PL TDA+ EP+YVNA+QY+ ILRRRQSRAKAESE K K RKPY
Sbjct: 85 QPMMHPPLVGMHPAGLPLPTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPY 144
Query: 118 LHESRHLHALKRARGSGGRFLNSKAVEGKQ--DTKSVDKKDGAVP 160
LHESRH HALKRARG+GGRFLNSK+ + ++ D+ S DK+DG P
Sbjct: 145 LHESRHQHALKRARGAGGRFLNSKSDDKEEHSDSSSRDKQDGVAP 189
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 59/72 (81%)
Query: 73 VPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARG 132
+PL + EP+YVNA+QYHGILRRRQSRAKAE E K K RKPYLHESRH HA++RARG
Sbjct: 154 MPLPLEISEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARG 213
Query: 133 SGGRFLNSKAVE 144
+GGRFLN+K E
Sbjct: 214 TGGRFLNTKKNE 225
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 73 VPL-VTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRAR 131
VPL + A EPIYVNA+QYH ILRRRQ RAK E+ENK K RKPYLHESRH HA+KRAR
Sbjct: 128 VPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRAR 187
Query: 132 GSGGRFLNSK 141
G+GGRFLN+K
Sbjct: 188 GTGGRFLNTK 197
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 73 VPL-VTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRAR 131
VPL V A EPI+VNA+QYH ILRRRQ RAK E++NK K RKPYLHESRH HA+KRAR
Sbjct: 141 VPLPVEPAAEEPIFVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRHAMKRAR 200
Query: 132 GSGGRFLNS 140
GSGGRFLN+
Sbjct: 201 GSGGRFLNT 209
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 73 VPLVTD-AVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRAR 131
+PL D +V EPI+VNA+QY+ ILRRRQ+RAK E++NKA K RKPYLHESRH HA+KRAR
Sbjct: 154 MPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRAR 213
Query: 132 GSGGRFLNSKAV 143
GSGGRFL K +
Sbjct: 214 GSGGRFLTKKEL 225
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 83 PIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLNSK 141
PIYVNA+Q I+RRR +RAKAE EN+ K RKPYLHESRHLHA++RARGSGGRFLN+K
Sbjct: 152 PIYVNAKQCSAIIRRRHARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFLNTK 210
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 63/79 (79%), Gaps = 5/79 (6%)
Query: 63 AALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESR 122
A M +PP + TD V PIYVNA+Q++GI+RRR +RAKAE E++ ++ RKPYLHESR
Sbjct: 89 AGRMLLPP---AIATD--VGPIYVNAKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESR 143
Query: 123 HLHALKRARGSGGRFLNSK 141
H HA++RARGSGGRFLN+K
Sbjct: 144 HRHAMRRARGSGGRFLNTK 162
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 53/59 (89%)
Query: 83 PIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLNSK 141
PIYVNA+QY GILRRR++RAKA+ EN+ K RKPYLHESRH HA++RARGSGGRFLN+K
Sbjct: 175 PIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNTK 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,619,922
Number of extensions: 244028
Number of successful extensions: 683
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 9
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)