Os03g0647600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nf-Y-A subunit.
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Os03g0647600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nf-Y-A subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.53 | 0.471 | 12.7 | 5.57 | 0.601 | -1.62 | -0.711 | -5.79 | 1.49 | 3.74 | 0.9094 | 15751 | -- | -- |
| 143.45 | 0.558 | 12.8 | 4.74 | 0.797 | -0.895 | -0.459 | -- | 1.25 | 3.69 | 22.15 | 9133 | -- | -- |
| 99.75 | 0.465 | 12.7 | 5.62 | 0.565 | -1.75 | -- | -6.19 | 1.48 | 3.82 | 0.79 | 15663 | -- | -- |
| 143.16 | 0.557 | 12.8 | 5.13 | 0.896 | -0.843 | -- | -- | 1.31 | 3.11 | 5.769 | 14931 | -- | -- |
| 119.17 | 0.508 | 12.7 | 5.64 | -- | -1.83 | -- | -6.37 | 1.49 | -- | 0.79 | 15710 | -- | -- |
| 163.45 | 0.599 | 12.8 | 4.52 | 0.698 | -- | -0.315 | -- | 1.48 | 3.13 | -- | -- | -- | -- |
| 163.75 | 0.599 | 12.8 | 4.53 | 0.695 | -- | -- | -- | 1.49 | 3.02 | -- | -- | -- | -- |
| 153.25 | 0.577 | 12.8 | 4.65 | -- | -1.08 | -- | -- | 1.23 | -- | 3.77 | 12788 | -- | -- |
| 664.21 | 1.2 | 13 | -- | 0.846 | -0.947 | -- | -- | 0.803 | 1.68 | 20.01 | 17731 | -- | -- |
| 191.39 | 0.646 | 12.8 | 4.56 | -- | -- | -- | -- | 1.5 | -- | -- | -- | -- | -- |
| 704.95 | 1.24 | 12.9 | -- | 0.784 | -- | -- | -- | 0.982 | 3.05 | -- | -- | -- | -- |
| 201.46 | 0.661 | 13.1 | -- | -- | -3.62 | -- | -- | 0.00148 | -- | 0.008693 | 47520 | -- | -- |
| 740.15 | 1.27 | 12.9 | -- | -- | -- | -- | -- | 0.999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 2 | 84.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 6 | 84.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 8 | 85.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 16 | 93.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 19 | 93.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 30 | 93.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 35 | 94.38 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 36 | 94.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 37 | 94.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 38 | 94.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 50 | 94.53 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 51 | 94.56 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 60 | 94.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 74 | 94.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 79 | 94.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 99 | 95.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 22 |
| 125 | 95.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 127 | 95.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 135 | 95.30 | radiation | 1 | 43200 | < th | dose dependent | sin | 23 | NA |
| 192 | 95.61 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 214 | 95.72 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 216 | 95.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 259 | 95.91 | temperature | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 283 | 96.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 287 | 96.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 294 | 96.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 322 | 96.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 325 | 96.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 13 |
| 369 | 96.36 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 371 | 96.36 | radiation | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 383 | 96.41 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 387 | 96.42 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 404 | 96.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 16 |
| 406 | 96.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 456 | 96.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 496 | 96.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 497 | 96.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 504 | 96.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 505 | 96.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 534 | 96.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 567 | 96.74 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 587 | 96.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 602 | 96.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 666 | 96.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 693 | 96.91 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 725 | 96.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 771 | 96.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 21 |
| 873 | 97.08 | temperature | 20 | 43200 | < th | dose independent | sin | 8 | NA |