BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0647600 Os03g0647600|AK106398
(354 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270 99 4e-21
AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296 93 2e-19
AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309 92 4e-19
AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309 87 9e-18
AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273 84 1e-16
AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329 83 2e-16
AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191 81 7e-16
AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342 81 9e-16
AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304 79 3e-15
AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199 77 1e-14
>AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270
Length = 269
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 102/240 (42%), Gaps = 55/240 (22%)
Query: 115 IAMQSPLPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLN--APA 172
AMQS FE G Q M+ +P ++Q YG+++ Y + S GR+++PL
Sbjct: 80 FAMQSAC------FEFGFAQPMMYTKHPHVEQYYGVVSAYGSQR-SSGRVMIPLKMETEE 132
Query: 173 DAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
D IYVN+KQY GI+ L + RKPY+H SRH HAMRR RGSGGRFLNT
Sbjct: 133 DGTIYVNSKQYHGIIRRRQSRAKAEK---LSRCRKPYMHHSRHLHAMRRPRGSGGRFLNT 189
Query: 233 KKEATAAGCGGSSKTPLASLVSPADVAHRPXXXXXXXXXXXXXXXXXXXVMYXXXXXXXX 292
K A AA S + + + P + +
Sbjct: 190 KT-ADAAKQSKPSNSQSSEVFHPEN----------------------ETINSSREANESN 226
Query: 293 XXXXXYNSIDHHLRTPFFTPLPIIMXXXXXXXXXXXXXXXXXXXPFRWATAAGD-GCCEL 351
S+D+ L + ++P ++M P +W AA D GCC+L
Sbjct: 227 LSDSAVTSMDYFLSSSAYSPGGMVM-------------------PIKWNAAAMDIGCCKL 267
>AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296
Length = 295
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 111 HSATIAMQSPLPEYNGHFELGLGQSMVSPNYPCIDQ-CYGLMTTYAMKSMSGGRMLLPLN 169
H AT +MQSP ELG Q + YP +Q YG+++ Y +S R++LPLN
Sbjct: 81 HGATFSMQSPC------LELGFSQPPIYTKYPYGEQQYYGVVSAYGSQS----RVMLPLN 130
Query: 170 APA-DAPIYVNAKQYEGILXXXXXXXXXXXXXXLVK----GRKPYLHESRHRHAMRRARG 224
D+ IYVN+KQY GI+ K RKPY+H SRH HA+RR RG
Sbjct: 131 METEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRG 190
Query: 225 SGGRFLNTKKE 235
SGGRFLNTK +
Sbjct: 191 SGGRFLNTKSQ 201
>AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309
Length = 308
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 49/73 (67%)
Query: 162 GRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRR 221
RM LP N P + PI+VNAKQY+ IL L+K RKPYLHESRH HA++R
Sbjct: 159 SRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKR 218
Query: 222 ARGSGGRFLNTKK 234
RGSGGRFLNTKK
Sbjct: 219 VRGSGGRFLNTKK 231
>AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309
Length = 308
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 156 MKSMSGGRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRH 215
M + R+ LP + + PI+VNAKQY IL L+K RKPYLHESRH
Sbjct: 160 MMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRH 219
Query: 216 RHAMRRARGSGGRFLNTKK--EATAAGCGG 243
HA++RARGSGGRFLNTKK E++ + C
Sbjct: 220 LHALKRARGSGGRFLNTKKLQESSNSLCSS 249
>AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273
Length = 272
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 122 PEYNGHFELGLGQSMVSPNYPCIDQCYG-LMTTYAMKS--------MSGGRMLLPLNAPA 172
PE GH+ + PN P D YG LM Y + M R LPL+ A
Sbjct: 119 PELVGHYIACV------PN-PYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDM-A 170
Query: 173 DAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
P+YVNAKQYEGIL +++ RKPYLHESRH+HAMRRAR SGGRF
Sbjct: 171 QEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKK 230
Query: 233 KKEATAAGCGGSSK 246
+ GG +
Sbjct: 231 SEVEAGEDAGGRDR 244
>AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329
Length = 328
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%)
Query: 163 RMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRA 222
R+ LP + + P++VNAKQ+ I+ L+K RKPYLHESRH HA++R
Sbjct: 161 RVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRP 220
Query: 223 RGSGGRFLNTKK 234
RGSGGRFLNTKK
Sbjct: 221 RGSGGRFLNTKK 232
>AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191
Length = 190
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 131 GLGQSMVSPNYPCIDQCYGLM--------TTYAMKSMSGGRMLLPLNAPADA---PIYVN 179
G SM YP D Y + T ++ M + +PL P+DA P++VN
Sbjct: 48 GTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPL--PSDAVEEPVFVN 105
Query: 180 AKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKE 235
AKQY GIL ++K RKPYLHESRH HA+RR RG GGRFLN KKE
Sbjct: 106 AKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKE 161
>AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342
Length = 341
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 156 MKSMSGGRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRK-PYLHESR 214
M SM GR+ LP P++VNAKQY I+ L++ RK PYLHESR
Sbjct: 161 MVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESR 220
Query: 215 HRHAMRRARGSGGRFLNTKK 234
H HA++R RGSGGRFLNTKK
Sbjct: 221 HVHALKRPRGSGGRFLNTKK 240
>AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304
Length = 303
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 102 GDTGEKNREH-SATIAMQSPLPEYNGHFELGLGQSMVSPNYPCIDQCY-GLMTTYAMK-- 157
GD +KN+E I P P+ GH +G S P D Y G+M Y
Sbjct: 91 GDYSDKNQESLHHGITQPPPHPQLVGHT-VGWASSN-----PYQDPYYAGVMGAYGHHPL 144
Query: 158 ------SMSGGRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLH 211
M RM LP A P++VNAKQY+ IL L+K RKPYLH
Sbjct: 145 GFVPYGGMPHSRMPLPPEM-AQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLH 203
Query: 212 ESRHRHAMRRARGSGGRFLN------TKKEATAAGCGGSSKTPLAS 251
ESRH+HAMRR RG+GGRF +K++A G +++P +S
Sbjct: 204 ESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSS 249
>AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199
Length = 198
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 166 LPLNAPA-DAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARG 224
+PL A + P++VNAKQY GIL +K +KPY+HESRH HA+RR RG
Sbjct: 89 VPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRG 148
Query: 225 SGGRFLNTKKE 235
GGRFLN KKE
Sbjct: 149 CGGRFLNAKKE 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,425,599
Number of extensions: 251835
Number of successful extensions: 539
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 10
Length of query: 354
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,364,969
Effective search space: 2124702126
Effective search space used: 2124702126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)