BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0647600 Os03g0647600|AK106398
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0647600 Similar to Nf-Y-A subunit 502 e-142
Os12g0618600 Similar to Transcriptional activator HAP2 221 5e-58
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 114 1e-25
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 109 3e-24
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 99 5e-21
Os07g0608200 Similar to CCAAT-binding transcription factor ... 94 2e-19
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 89 3e-18
Os12g0613000 Similar to NF-YA subunit 89 6e-18
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 77 1e-14
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 272/354 (76%), Positives = 272/354 (76%)
Query: 1 MLSFKQSHEGFGHVXXXXXXXXXXXXXXXXXSQLLYGEASPEEAALRDGGQFQVVPGGRA 60
MLSFKQSHEGFGHV SQLLYGEASPEEAALRDGGQFQVVPGGRA
Sbjct: 1 MLSFKQSHEGFGHVAAAGAGPQQQQQPWWAGSQLLYGEASPEEAALRDGGQFQVVPGGRA 60
Query: 61 ALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSATIAMQSP 120
ALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSATIAMQSP
Sbjct: 61 ALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSATIAMQSP 120
Query: 121 LPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVNA 180
LPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVNA
Sbjct: 121 LPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVNA 180
Query: 181 KQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAAG 240
KQYEGIL LVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAAG
Sbjct: 181 KQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAAG 240
Query: 241 CGGSSKTPLASLVSPADVAHRPXXXXXXXXXXXXXXXXXXXVMYXXXXXXXXXXXXXYNS 300
CGGSSKTPLASLVSPADVAHRP VMY YNS
Sbjct: 241 CGGSSKTPLASLVSPADVAHRPGSGGRASSLSGSDVSSPGGVMYDHHRHDDADAADHYNS 300
Query: 301 IDHHLRTPFFTPLPIIMXXXXXXXXXXXXXXXXXXXPFRWATAAGDGCCELLKA 354
IDHHLRTPFFTPLPIIM PFRWATAAGDGCCELLKA
Sbjct: 301 IDHHLRTPFFTPLPIIMDSGGGGGDHASHSAAAVAAPFRWATAAGDGCCELLKA 354
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 178/355 (50%), Gaps = 45/355 (12%)
Query: 1 MLSFKQSHEGFGHVXXXXXXXXXXXXXXXXXSQLLYGEASPE-EAALRDGGQFQVVPGGR 59
M+SF +S EGFG V LLYGE + + A+ G VVP +
Sbjct: 1 MMSFNKSQEGFGQVAAVATLASNGGGSL---PWLLYGEPLGQGKPAMSPEG---VVPRAQ 54
Query: 60 AALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSATIAMQS 119
LDP VPAM + G PE+L FS+ G GEK EHS TIA+QS
Sbjct: 55 TPLDPPQ-------VPAMDR-----GVPEILNFSMVPGK------GEKCSEHSTTIALQS 96
Query: 120 PLPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVN 179
P EYNG FELGLGQS+V NYP DQ YGL++ Y ++ GR+L+P N PADAPIYVN
Sbjct: 97 PFAEYNGCFELGLGQSVVPSNYPYADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVN 156
Query: 180 AKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAA 239
AKQ I+ LVK RKPYLHESRH HAMRRARGSGGRFLNTKKE
Sbjct: 157 AKQCSAIIRRRHARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFLNTKKETNGK 216
Query: 240 GCGGSSKTPLASLVSPADVAHRPXXXXXXXXXXXXXXXXXXXVMYXXXXXXXXXXXXXYN 299
GG K + ++ P A P +Y ++
Sbjct: 217 TTGGGRKV-MDIIIPPLCPAASPSSEQCNPSSVSSLSGSEVSSIYEHEDMDH------FH 269
Query: 300 SIDHHLRTPFFTPLPIIMXXXXXXXXXXXXXXXXXXXPFRWATAAGDGCCELLKA 354
S DH LRT FFTPLP +M PF+W TAA DGCC+LLKA
Sbjct: 270 SFDH-LRTHFFTPLPSLMDVEHGAGN-----------PFKW-TAASDGCCDLLKA 311
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 90 LKFSVFSGNLEPGDTGEKNREHSATIAMQSPLPEYNGHFELGLGQSMVSPNYPCIDQCYG 149
+KF + SG+ + G + + + TIA SPL EY GHFEL LG SMV N+ +Q YG
Sbjct: 19 MKFPIISGDSDLGKDLKFHESSAPTIAAYSPLQEYQGHFELALGHSMVCTNFCNSEQSYG 78
Query: 150 LMTTYAMKSMSGGRMLLPLNAPADA-PIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKP 208
+ + Y ++M+G RMLLP D PIYVNAKQ+ GI+ + + RKP
Sbjct: 79 VYSPYGAQTMAG-RMLLPPAIATDVGPIYVNAKQFNGIIRRRLARAKAEREHRVSRSRKP 137
Query: 209 YLHESRHRHAMRRARGSGGRFLNTKK 234
YLHESRHRHAMRRARGSGGRFLNTK
Sbjct: 138 YLHESRHRHAMRRARGSGGRFLNTKN 163
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 52 FQVVPGGRAALDPAAPEPEKTAVPAMPKRGGGG--GAPEVLKFSVFSGNLEPGDTGEKNR 109
+ G A+ PA P A ++ R GGG A E S SG + G T ++
Sbjct: 29 WWTTSAGVGAVSPAVVAPGSGAGISLSGRDGGGDDAAEESSDDSRRSGETKDGSTDQE-- 86
Query: 110 EHSATIAMQSPLPEYNGHF-ELGLGQSMVSPNYPCIDQCY-GLMTTYAMKSMSG------ 161
+H AT M + +Y F +L L Q + S Y D Y G++ Y ++MS
Sbjct: 87 KHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQL 146
Query: 162 -----GRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHR 216
RM LPL ++ P+YVNAKQY GIL +VK RKPYLHESRH+
Sbjct: 147 PGLTHSRMPLPLEI-SEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQ 205
Query: 217 HAMRRARGSGGRFLNTKKEATAA 239
HAMRRARG+GGRFLNTKK A
Sbjct: 206 HAMRRARGTGGRFLNTKKNEDGA 228
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 140 NYPCIDQCYG-LMTTYAMKS---------MSGGRMLLPLNAPADAPIYVNAKQYEGILXX 189
+YP D YG + TY + MS R+ LP+ + PIYVNAKQY IL
Sbjct: 94 SYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRR 153
Query: 190 XXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAAGCG 242
LVK RKPYLHESRH+HAM+RARG+GGRFLNTK++ A+ G
Sbjct: 154 RQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGG 206
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 65/108 (60%), Gaps = 13/108 (12%)
Query: 138 SPNYPCI----DQCYG-LMTTYAMKSM--------SGGRMLLPLNAPADAPIYVNAKQYE 184
S ++ CI D YG ++T Y+ ++ + R+ LP+ A+ PI+VNAKQY
Sbjct: 102 SQSFACIPYTADAYYGGVLTGYSSHAIVHPQQNGTANSRVPLPVEPAAEEPIFVNAKQYH 161
Query: 185 GILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
IL LVKGRKPYLHESRHRHAM+RARGSGGRFLNT
Sbjct: 162 AILRRRQIRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFLNT 209
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 54/97 (55%)
Query: 160 SGGRMLLPLNAPADAPIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAM 219
+ RM LP++ + PI+VNAKQY IL VKGRKPYLHESRH HAM
Sbjct: 150 ANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAM 209
Query: 220 RRARGSGGRFLNTKKEATAAGCGGSSKTPLASLVSPA 256
+RARGSGGRFL K+ K P AS SP
Sbjct: 210 KRARGSGGRFLTKKELLEQQQQQQQQKPPPASAQSPT 246
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 166 LPLNAPADA---PIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRA 222
LPL P DA P+YVNAKQY IL LVKGRKPYLHESRH+HA++RA
Sbjct: 100 LPL--PTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRA 157
Query: 223 RGSGGRFLNTKKEATAAGCGGSSK 246
RG+GGRFLN+K + SS+
Sbjct: 158 RGAGGRFLNSKSDDKEEHSDSSSR 181
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 125 NGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKS----MSGGRMLLPLNAP---ADA--- 174
+ + LG + +YP I YG TY S ++ M +P ++ DA
Sbjct: 25 SAEYVASLGPATAPVSYPYISTYYG--GTYGAYSGQPLVNAALMAMPPHSVPLVTDAVVE 82
Query: 175 PIYVNAKQYEGILXXXXXXXXXXXXXXLVKGRKPYLHESRHRHAMRRARGSGGRFLNTK 233
PIYVNA+QY GIL K RKPYLHESRH HA++RARGSGGRFLN+K
Sbjct: 83 PIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGRFLNSK 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,522,443
Number of extensions: 523265
Number of successful extensions: 2647
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2640
Number of HSP's successfully gapped: 9
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)