Os07g0608200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CCAAT-binding transcription factor subunit B (CBF-B) (NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding protein subunit A). Splice isoform Short.
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Os07g0608200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CCAAT-binding transcription factor subunit B (CBF-B) (NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding protein subunit A). Splice isoform Short.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.37 | 0.255 | 11.2 | 1.67 | 0.435 | -1.89 | 1.28 | -4.12 | 0.536 | 1.77 | 0.2457 | 1522 | -- | -- |
| 32.81 | 0.267 | 11.2 | 1.31 | 0.518 | -1.2 | 0.672 | -- | 0.356 | 2.3 | 1.954 | 1573 | -- | -- |
| 32.62 | 0.266 | 11.2 | 1.63 | 0.179 | -1.81 | -- | -3.79 | 0.513 | 1.87 | 0.2695 | 1452 | -- | -- |
| 32.93 | 0.267 | 11.2 | 1.32 | 0.391 | -1.08 | -- | -- | 0.455 | 2.21 | 2.425 | 1532 | -- | -- |
| 33.31 | 0.269 | 11.2 | 1.66 | -- | -1.76 | -- | -3.95 | 0.527 | -- | 0.2598 | 1429 | -- | -- |
| 41.4 | 0.302 | 11.2 | 1.53 | 0.202 | -- | 0.616 | -- | 0.587 | 3.41 | -- | -- | -- | -- |
| 42.01 | 0.304 | 11.2 | 1.52 | 0.237 | -- | -- | -- | 0.583 | 5.08 | -- | -- | -- | -- |
| 35.88 | 0.279 | 11.2 | 1.4 | -- | -0.788 | -- | -- | 0.47 | -- | 2.698 | 1437 | -- | -- |
| 51.44 | 0.334 | 11.2 | -- | 0.444 | -1.1 | -- | -- | 0.486 | 2.5 | 0.007549 | 45052 | -- | -- |
| 44.97 | 0.313 | 11.2 | 1.53 | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
| 102.64 | 0.474 | 11.2 | -- | 0.264 | -- | -- | -- | 0.414 | 4.88 | -- | -- | -- | -- |
| 37.2 | 0.284 | 11.3 | -- | -- | -1.3 | -- | -- | 0.0579 | -- | 0.297 | 47520 | -- | -- |
| 106.32 | 0.481 | 11.2 | -- | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 5 | 27.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 8 | 27.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 11 | 27.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 13 | 28.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 14 | 28.18 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 15 | 28.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 16 | 28.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 33 | 28.49 | wind | 1 | 43200 | < th | dose dependent | sin | 12 | NA |
| 41 | 28.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 14 |
| 49 | 28.63 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 67 | 28.74 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 120 | 29.05 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 136 | 29.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 170 | 29.23 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 181 | 29.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 194 | 29.28 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 17 |
| 212 | 29.29 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 22 |
| 213 | 29.29 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 216 | 29.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 233 | 29.31 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 262 | 29.32 | temperature | 20 | 14400 | < th | dose dependent | rect. | 10 | 18 |
| 274 | 29.32 | temperature | 20 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 277 | 29.32 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 326 | 29.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 340 | 29.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 349 | 29.36 | temperature | 20 | 14400 | < th | dose dependent | sin | 4 | NA |
| 380 | 29.38 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 381 | 29.38 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 386 | 29.38 | temperature | 20 | 14400 | < th | dose dependent | sin | 12 | NA |
| 410 | 29.39 | temperature | 20 | 14400 | < th | dose dependent | sin | 10 | NA |
| 461 | 29.42 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 510 | 29.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 540 | 29.47 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 611 | 29.54 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 619 | 29.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 637 | 29.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 644 | 29.58 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 654 | 29.60 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 674 | 29.63 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 700 | 29.66 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 710 | 29.67 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 715 | 29.68 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 724 | 29.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 735 | 29.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 740 | 29.71 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 745 | 29.71 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 801 | 29.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 812 | 29.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 890 | 29.87 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 909 | 29.88 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 919 | 29.90 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 920 | 29.90 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 935 | 29.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 945 | 29.91 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 978 | 29.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 983 | 29.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 8 |