BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0696300 Os03g0696300|AK069854
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304 138 2e-33
AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191 135 3e-32
AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273 131 3e-31
AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309 126 1e-29
AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199 124 5e-29
AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342 119 1e-27
AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329 118 3e-27
AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309 117 8e-27
AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296 107 9e-24
AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270 105 3e-23
>AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304
Length = 303
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 121 YPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHGILRRRQ 180
Y D YY G++G YG + G+ HSRMPLP E+++EPV+VNAKQY ILRRRQ
Sbjct: 127 YQDPYYAGVMGAYGHHPLG---FVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQ 183
Query: 181 SRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEKAE 234
+RAKAELEKK++KSRKPYLHESRHQHAMRR RGTGGRF KK A KAE
Sbjct: 184 ARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAE 235
>AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191
Length = 190
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 114 IASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYH 173
+A Y YPD YY + P PQ + H QL G+ +PLP + EEPV+VNAKQYH
Sbjct: 53 MAPGQYPYPDPYYRSIFAP-PPQPYTG-VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110
Query: 174 GILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKK----NEDGAP 229
GILRRRQSRA+ E + KV+KSRKPYLHESRH HA+RR RG GGRFLN KK +ED +
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170
Query: 230 SEKAEPNKGE 239
EK+ + G+
Sbjct: 171 EEKSNLSAGK 180
>AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273
Length = 272
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 82/114 (71%), Gaps = 3/114 (2%)
Query: 114 IASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYH 173
IA Y D YY G++G YG Q + + + +P R LPL++++EPVYVNAKQY
Sbjct: 126 IACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMP---RERTALPLDMAQEPVYVNAKQYE 182
Query: 174 GILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDG 227
GILRRR++RAKAELE+KV++ RKPYLHESRH+HAMRRAR +GGRF + E G
Sbjct: 183 GILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAG 236
>AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309
Length = 308
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 124 SYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISE-EPVYVNAKQYHGILRRRQSR 182
S++ G + P +A H ++ GL SR+PLP I E EP++VNAKQYH ILRRR+ R
Sbjct: 138 SHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHR 197
Query: 183 AKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPS 230
AK E + K++K RKPYLHESRH HA++RARG+GGRFLNTKK ++ + S
Sbjct: 198 AKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNS 245
>AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199
Length = 198
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 111 NQPIASAAYQYPDSYYMGMVG--PYGPQAMSAQTHFQLPGLTHSRMPLPLEISEEPVYVN 168
++P+A Y YPD YY + Y P QL G+ +PL + EEPV+VN
Sbjct: 45 SEPMAHGLYPYPDPYYRSVFAQQAYLPHPYPG-VQLQLMGMQQPGVPLQCDAVEEPVFVN 103
Query: 169 AKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGA 228
AKQYHGILRRRQSRAK E + +K++KPY+HESRH HA+RR RG GGRFLN KK E+G
Sbjct: 104 AKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK-ENGD 162
Query: 229 PSEKAEPNKGEQNS 242
E+ E E S
Sbjct: 163 HKEEEEATSDENTS 176
>AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342
Length = 341
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 95/146 (65%), Gaps = 9/146 (6%)
Query: 102 LTPFSQLELNQPIASAAYQYPDSYYMGMVGP-YGPQAMSAQTHFQLPGLTHSRMPLPLEI 160
+T F + A+ ++ Y D +Y G++ Y PQA + Q+ + R+PLP E+
Sbjct: 118 MTGFPNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNP--QMVSMIPGRVPLPAEL 175
Query: 161 SE-EPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRK-PYLHESRHQHAMRRARGTGGRF 218
+E +PV+VNAKQYH I+RRRQ RAK E + K++++RK PYLHESRH HA++R RG+GGRF
Sbjct: 176 TETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRF 235
Query: 219 LNTKK----NEDGAPSEKAEPNKGEQ 240
LNTKK +E A E+ + G+Q
Sbjct: 236 LNTKKLLQESEQAAAREQEQDKLGQQ 261
>AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329
Length = 328
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 115 ASAAYQYPDSYYMGMV-GPYGPQAMSAQTHFQLPGLTHSRMPLPLEISE-EPVYVNAKQY 172
A+ ++ Y D ++ G++ Y PQA P +T R+PLP ++ E EPV+VNAKQ+
Sbjct: 129 ANFSFHYADPHFGGLMPAAYLPQATIWN-----PQMT--RVPLPFDLIENEPVFVNAKQF 181
Query: 173 HGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTKKNEDGAPSEK 232
H I+RRRQ RAK E + K++K+RKPYLHESRH HA++R RG+GGRFLNTKK ++ ++
Sbjct: 182 HAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQESTDPKQ 241
Query: 233 AEPNKGEQNSG 243
P + + +G
Sbjct: 242 DMPIQQQHATG 252
>AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309
Length = 308
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 90/139 (64%), Gaps = 7/139 (5%)
Query: 97 LASDYLTPFSQLELNQPIASAAYQYPDS---YYMGMVG-PYGPQAMSAQTHFQLPGLTHS 152
+ S ++ SQ + PI +A++ + ++ G + PY Q H Q+ GL S
Sbjct: 102 IGSHSISKVSQDSVVLPIEAASWPLHGNVTPHFNGFLSFPYASQH--TVQHPQIRGLVPS 159
Query: 153 RMPLPLEISE-EPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRA 211
RMPLP I E EP++VNAKQY ILRRR+ RAK E + K++K RKPYLHESRH HA++R
Sbjct: 160 RMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRV 219
Query: 212 RGTGGRFLNTKKNEDGAPS 230
RG+GGRFLNTKK+++ S
Sbjct: 220 RGSGGRFLNTKKHQESNSS 238
>AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296
Length = 295
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 87/155 (56%), Gaps = 28/155 (18%)
Query: 103 TPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISE 162
+P +L +QP Y Y + Y G+V YG Q + +PL +E +
Sbjct: 89 SPCLELGFSQPPIYTKYPYGEQQYYGVVSAYGSQ-------------SRVMLPLNMETED 135
Query: 163 EPVYVNAKQYHGILRRRQSRAKAE--LEKKVVKSR--KPYLHESRHQHAMRRARGTGGRF 218
+YVN+KQYHGI+RRRQSRAKA L++K + SR KPY+H SRH HA+RR RG+GGRF
Sbjct: 136 STIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195
Query: 219 LNTK-----------KNEDGAPSEKAEPNKGEQNS 242
LNTK K DG+ +++P + NS
Sbjct: 196 LNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNS 230
>AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270
Length = 269
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 15/117 (12%)
Query: 107 QLELNQPIASAAYQYPDSYYMGMVGPYGPQAMSAQTHFQLPGLTHSRMPLPLEISEE-PV 165
+ QP+ + + + YY G+V YG Q S + +PL +E E+ +
Sbjct: 88 EFGFAQPMMYTKHPHVEQYY-GVVSAYGSQRSSGRV----------MIPLKMETEEDGTI 136
Query: 166 YVNAKQYHGILRRRQSRAKAELEKKVVKSRKPYLHESRHQHAMRRARGTGGRFLNTK 222
YVN+KQYHGI+RRRQSRAKAE K+ + RKPY+H SRH HAMRR RG+GGRFLNTK
Sbjct: 137 YVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK 190
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,931,911
Number of extensions: 182633
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 10
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)