BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0560700 Os12g0560700|AK073411
(725 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0560700 Similar to PROLIFERA protein 1412 0.0
Os05g0235800 MCM protein 6 family protein 326 3e-89
Os11g0484300 Similar to Mcm2-prov protein 311 8e-85
Os05g0476200 Similar to DNA replication licensing factor MC... 306 3e-83
AK110005 306 3e-83
AK110122 298 1e-80
Os02g0797400 MCM family protein 288 1e-77
Os06g0218500 MCM family protein 225 1e-58
Os05g0464100 MCM family protein 175 1e-43
Os05g0173700 Similar to DNA replication licensing factor MC... 87 4e-17
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/725 (94%), Positives = 688/725 (94%)
Query: 1 MAATATKTIDFAAERALAKDFLANFAGPRGEPKYLNILQDVANRKIRAVQIELDDLFHYK 60
MAATATKTIDFAAERALAKDFLANFAGPRGEPKYLNILQDVANRKIRAVQIELDDLFHYK
Sbjct: 1 MAATATKTIDFAAERALAKDFLANFAGPRGEPKYLNILQDVANRKIRAVQIELDDLFHYK 60
Query: 61 DADDEFLQRVTENTKRYIGIFADAIDELMPESTEAYAVDEDRDILMTQRVXXXXXXXXXX 120
DADDEFLQRVTENTKRYIGIFADAIDELMPESTEAYAVDEDRDILMTQRV
Sbjct: 61 DADDEFLQRVTENTKRYIGIFADAIDELMPESTEAYAVDEDRDILMTQRVDEGADGGADG 120
Query: 121 XXPLQRMPPEIRRFFEVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQV 180
PLQRMPPEIRRFFEVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQV
Sbjct: 121 TDPLQRMPPEIRRFFEVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQV 180
Query: 181 AVYTCEECGFEIYQEVTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQE 240
AVYTCEECGFEIYQEVTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQE
Sbjct: 181 AVYTCEECGFEIYQEVTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQE 240
Query: 241 LAEHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLE 300
LAEHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLE
Sbjct: 241 LAEHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLE 300
Query: 301 SMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXV 360
SMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKA V
Sbjct: 301 SMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLV 360
Query: 361 GAPHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 420
GAPHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV
Sbjct: 361 GAPHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 420
Query: 421 QKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSL 480
QKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSL
Sbjct: 421 QKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSL 480
Query: 481 NARTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVV 540
NARTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVV
Sbjct: 481 NARTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVV 540
Query: 541 HVHQNLESPALGFTPLEPPVLRAYISTARRVVPSVPRELEEYIATAYSSIRQEEAKSNAP 600
HVHQNLESPALGFTPLEPPVLRAYISTARRVVPSVPRELEEYIATAYSSIRQEEAKSNAP
Sbjct: 541 HVHQNLESPALGFTPLEPPVLRAYISTARRVVPSVPRELEEYIATAYSSIRQEEAKSNAP 600
Query: 601 HSYXXXXXXXXXXXXXXXXXXXXFSETVAQSDVDEALRLMQMSKYSLYSDDRQRSGLDAI 660
HSY FSETVAQSDVDEALRLMQMSKYSLYSDDRQRSGLDAI
Sbjct: 601 HSYTTIRTLLSILRISIALARLRFSETVAQSDVDEALRLMQMSKYSLYSDDRQRSGLDAI 660
Query: 661 SDIYSILRDEAARTNSMDVRYAHALNLISRKGYSEAQLKECLEEYASLNVWQIHPNTFDI 720
SDIYSILRDEAARTNSMDVRYAHALNLISRKGYSEAQLKECLEEYASLNVWQIHPNTFDI
Sbjct: 661 SDIYSILRDEAARTNSMDVRYAHALNLISRKGYSEAQLKECLEEYASLNVWQIHPNTFDI 720
Query: 721 HFIDA 725
HFIDA
Sbjct: 721 HFIDA 725
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 326 bits (836), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/501 (35%), Positives = 280/501 (55%), Gaps = 54/501 (10%)
Query: 150 IRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQ-EVTARVFMPLFECP 208
+R++ + IG+L + G+VTR S+V+P + + C +CG + E + P+ C
Sbjct: 124 LRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPII-CV 182
Query: 209 SQRCKLNKAKGNLILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELTRKVAP 268
+ C+ N++K L+ Q SKF +Q V++QE ++ +P G +PRSL V LR E+ K
Sbjct: 183 NATCQ-NRSKWALLRQ--ESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARA 239
Query: 269 GDVVEMSGIFLPMP------------------------------YYGFRAM-------RA 291
GD V +G + +P G +++ R
Sbjct: 240 GDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRL 299
Query: 292 GLVADTY--------LESMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAP 343
VA++ ++ E + +E++++ R+ D +NK+ S+ P
Sbjct: 300 AFVANSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMRNVPDFFNKIVDSICP 359
Query: 344 EIFGHEDVKKAXXXXXVGAPHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG 403
+FGH+++K+A +G H+ +G+ +RGD+++C++GDP AKSQ LK+ + PR
Sbjct: 360 TVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRS 419
Query: 404 VYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEV 463
VYT+G+ SS GLTA V K+P T EF +E GAL+LAD GIC IDEFDKM+ D+ AIHE
Sbjct: 420 VYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEA 479
Query: 464 MEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLI 523
MEQQT+SI KAGI +LNART++LAAANP GRYD + N+ LPPA+LSRFDL++++
Sbjct: 480 MEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIM 539
Query: 524 LDRADMETDLEMARHVVHVHQNLESP-ALGFTPLEPPVLRAYISTARRVVPSVPRELEEY 582
+D D TD +A H+V VHQ E A F+ E L+ YI+ A+ + P + E ++
Sbjct: 540 IDEPDENTDYHIAHHIVRVHQKREEALAPAFSTAE---LKRYIAFAKSLKPQLSSEAKKV 596
Query: 583 IATAYSSIRQEEAKSNAPHSY 603
+ +Y ++R+ ++ +Y
Sbjct: 597 LVESYVTLRRGDSTPGTRVAY 617
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 179/495 (36%), Positives = 273/495 (55%), Gaps = 40/495 (8%)
Query: 132 RRFFEVYIKAFSKVTPL----TIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEE 187
+ + ++ K + ++T L IR ++ ++ +++I G+VTR S V P +Q + C +
Sbjct: 323 KNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSK 382
Query: 188 CGFEIYQEVTARVFMPLF-----ECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELA 242
CG V P F E C ++KG + + + + +Q++ LQE
Sbjct: 383 CG---------TVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESP 433
Query: 243 EHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESM 302
VP G +PR V L +L PG+ +E++GI+ V T +E+
Sbjct: 434 GIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEAN 493
Query: 303 SITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXVGA 362
+ + + Y+L +++ +I++LA+D I ++ +S+AP I+GHED+K A G
Sbjct: 494 YVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGG 553
Query: 363 PHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQK 422
+ + ++RGD+++ L+GDPG AKSQ LK++ R VYTTG+G+S VGLTAAV K
Sbjct: 554 QEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHK 613
Query: 423 DPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNA 482
DPVT E+ LEGGALVLAD GIC IDEFDKM + DR +IHE MEQQ++SI+KAGI TSL A
Sbjct: 614 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 673
Query: 483 RTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHV 542
R +V+AAANP GRYD +T +N+ L ++SRFD+L ++ D D TD +AR VV
Sbjct: 674 RCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDS 733
Query: 543 H-------QNLE---------SPALGFTPLEPPV-----LRAYISTAR-RVVPSVPRELE 580
H NLE P +P + L+ YI+ A+ V P +
Sbjct: 734 HARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYAKLNVFPKIHDADL 793
Query: 581 EYIATAYSSIRQEEA 595
+ I+ Y+ +R+E +
Sbjct: 794 DKISHVYAELRRESS 808
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/408 (40%), Positives = 250/408 (61%), Gaps = 13/408 (3%)
Query: 141 AFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEI---YQEVT 197
F +VTP R + +S IG +V + GIVT+CS V+P + +V+ C G + Y+++T
Sbjct: 103 GFHRVTP---RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDIT 159
Query: 198 ARVFMPLFECPSQRCKLNKAKGNLIL-QLRASKFLKFQEVKLQELAEHVPKGHIPRSLTV 256
+ V +P R GNL++ + ++ Q + +QE+ E+ G +PR++ +
Sbjct: 160 SFVGLPTGSVYPTR----DENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDI 215
Query: 257 HLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESMSITHFKKKYEEYEL 316
+ +L PGD V + G++ +P G V T L + +++ K+
Sbjct: 216 IVEDDLVDSCKPGDRVSIVGVYKALP--GKSKGSVSGVFRTVLIANNVSLMNKEANAPVY 273
Query: 317 KGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXVGAPHRKLTDGMKIRGD 376
++ +++ ++ D ++ L SLAP I+GH +KKA +G + L +G +RGD
Sbjct: 274 TREDLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGD 333
Query: 377 LHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGAL 436
+++ ++GDP VAKSQLL+ ++N+AP + TTGRGSSGVGLTAAV D T E LE GA+
Sbjct: 334 INMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAM 393
Query: 437 VLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGR 496
VLAD G+ IDEFDKM + DR AIHEVMEQQTV+IAKAGI SLNAR +V+AAANP +G
Sbjct: 394 VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGT 453
Query: 497 YDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVHQ 544
YD TP +NI LP +LLSRFDLL+++LD+ D E D +++ HV +H+
Sbjct: 454 YDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHR 501
>AK110005
Length = 954
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/482 (36%), Positives = 270/482 (56%), Gaps = 27/482 (5%)
Query: 136 EVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQE 195
EV+++ T T+R ++ ++ LV++SG+VTR S V P ++ + C +CG
Sbjct: 312 EVHVRIADLPTSSTLRDLRQGHLNSLVRVSGVVTRRSGVFPQLKYVKFDCLKCG------ 365
Query: 196 VTARVFMPLFECPSQRCKLN-----KAKGNLILQLRASKFLKFQEVKLQELAEHVPKGHI 250
V P ++ +Q K++ + +G + + + +Q++ LQE VP G +
Sbjct: 366 ---AVLGPFWQDANQEIKISYCSNCEQRGPFRINSEQTVYRNYQKMTLQESPGSVPPGRL 422
Query: 251 PRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESMSITHFKKK 310
PR V L +L PG+ VE++G++ V T LE+ I
Sbjct: 423 PRHREVILLWDLIDSAKPGEEVEITGVYRNNFDASLNTKNGFPVFATVLEANHIAKRDDA 482
Query: 311 YEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXVGAPHRKLTDG 370
+ + L +++ QI LA+D I ++ +S+AP I+GHED+K A G + +
Sbjct: 483 FSAFRLTEEDERQIKALAKDERIGKRIIKSIAPSIYGHEDIKTAIALSLFGGVSKDIGGK 542
Query: 371 MKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFV 430
+IRGD+++ L+GDPG AKSQ LK++ A R V+TTG+G+S VGLTA+V+KDPVT E+
Sbjct: 543 HRIRGDINVLLLGDPGTAKSQFLKYVEKTASRAVFTTGQGASAVGLTASVRKDPVTREWT 602
Query: 431 LEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAA 490
LEGGALVLAD G+C IDEFDKM ++DRT+IHE MEQQ +SI+KAGI T+L AR A++AAA
Sbjct: 603 LEGGALVLADKGVCLIDEFDKMNDADRTSIHEAMEQQQISISKAGIVTTLQARCAIVAAA 662
Query: 491 NPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVH------- 543
NP GRY+ +N+ L +LSRFD L ++ D D D +AR VV H
Sbjct: 663 NPIRGRYNPTIPFNQNVELTEPILSRFDALCVVKDTVDPVKDDMLARFVVGSHLRSHPKF 722
Query: 544 -----QNLESPALGFTPLEPPVLRAYISTAR-RVVPSVPRELEEYIATAYSSIRQEEAKS 597
+ L + +L L +L+ YI AR V PS+ ++ I+ Y+ +R+E +
Sbjct: 723 DDETDEQLVATSLDADILPQDLLKKYIMYARDHVRPSLNALDQDRISRLYADLRRESIST 782
Query: 598 NA 599
+
Sbjct: 783 GS 784
>AK110122
Length = 568
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 264/444 (59%), Gaps = 22/444 (4%)
Query: 145 VTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECG-FEIYQEVTARVFMP 203
V P T+R + ++G+++ + GIVTRCS V+P + +V+ CE F + A ++
Sbjct: 118 VNPRTLRSI---HLGKMMSLEGIVTRCSLVRPKILKSVHYCENTAKFHQREYRDATMYGT 174
Query: 204 LFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELT 263
L + +++ L + S+F Q + +QE+ E P G +PRS+ V + ++
Sbjct: 175 LPPSSTVYPTEDESGNRLTTEYGHSQFRDHQMISIQEMPERAPPGQLPRSIDVVMDDDMV 234
Query: 264 RKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESMSITHFKKKYEEYELKGDEQ-- 321
+ PGD +++ G++ + R G + + ++ I + G Q
Sbjct: 235 DRCKPGDRIQLVGMYRSL------GNRVGQSSSSTFRTLMIGNNINLLSSKAGGGIAQAH 288
Query: 322 ------EQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXVGAPHRKLTDGMKIRG 375
I+++A+ +++N L++SLAP I+GHE +KKA +G + L +G IRG
Sbjct: 289 ITDTDIRNINKIAKRKNVFNLLSQSLAPSIYGHEYIKKAVLLL-LGGEEKNLPNGTHIRG 347
Query: 376 DLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGA 435
D++I ++GDP AKSQ+L+ ++N AP + TTGRGSSGVGLTAAV D T E LE GA
Sbjct: 348 DINILMVGDPSTAKSQMLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERRLEAGA 407
Query: 436 LVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWG 495
+VLAD G+ IDEFDKM + DR AI+EVMEQQTV+IAKAGI TSLNAR +V+AAANP +G
Sbjct: 408 MVLADRGVICIDEFDKMSDVDRVAIYEVMEQQTVTIAKAGIHTSLNARCSVVAAANPIYG 467
Query: 496 RYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVHQNLESPAL--GF 553
+YD+ + P +NI LP +LLSRFDLL+++ D D + D ++ HV+ +H+ L+ P L G
Sbjct: 468 QYDVHKDPHKNIALPDSLLSRFDLLFVVTDDVDEQHDRMISEHVLRMHRYLQ-PGLEEGT 526
Query: 554 TPLEPPVLRAYISTARRVVPSVPR 577
++ R+ + R +P+ PR
Sbjct: 527 PAVDNLTRRSMWALPRARMPTAPR 550
>Os02g0797400 MCM family protein
Length = 729
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 203/594 (34%), Positives = 289/594 (48%), Gaps = 63/594 (10%)
Query: 19 KDFLANFAGPRGEPKYLNILQDVANRKIRAVQIELDDLFHYKDADDEFLQRVTENTKRYI 78
K+FL F GP G+ Y L V NR V IE D F D E ++ ++ Y+
Sbjct: 40 KEFLRGFTGPTGDFPYRESL--VHNRDHVTVAIEDLDAF-----DAELSDKIRKSPADYL 92
Query: 79 GIFADAIDELMPESTEAYAVDEDRDILMTQRVXXXXXXXXXXXXPLQRMPPEIRRFFEVY 138
+F A E++ S + E ++ E +V
Sbjct: 93 PLFETAASEVLA-SLRSKVAGETGEM-------------------------EEPATGDVQ 126
Query: 139 IKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEEC---------- 188
I SK L++R + A + +LVKI+GI S VK C+ C
Sbjct: 127 IFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCRP 186
Query: 189 --GFEIYQEVTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELAEHVP 246
G I V P + C L+ I SK++ Q +KLQE E VP
Sbjct: 187 GLGGAIVPRSCDHVPQP----GEEPCPLDP----WIAVPDKSKYVDLQTLKLQENPEDVP 238
Query: 247 KGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVA--DTYLESMSI 304
G +PR++ + + L + + PG + + GI+ Y A + G V Y+ + +
Sbjct: 239 TGELPRNMLLSVDRHLVQTIVPGTRLTVIGIY---SVYQASANQKGAVGVKQPYIRVVGL 295
Query: 305 THFKKKYEE--YELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKAXXXXXVGA 362
+ DE+ + A+ D Y K+ + P I+GH DVKKA G
Sbjct: 296 EQSRDANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGG 355
Query: 363 PHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQK 422
++L DG+++RGD+H+ L+GDP AKSQ LK + AP VYT+G+GSS GLTA+V +
Sbjct: 356 SKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 415
Query: 423 DPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNA 482
D + EF LEGGA+VLAD G+ IDEFDKM DR AIHE MEQQT+SIAKAGITT LN+
Sbjct: 416 DGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 475
Query: 483 RTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHV 542
RT+VLAAANP GRYD +T +NI+L +LSRFDL++++ D + D +A H++ V
Sbjct: 476 RTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKV 535
Query: 543 HQNLESPALGFTPLEPP--VLRAYISTARRVV-PSVPRELEEYIATAYSSIRQE 593
H + + + T L+ YI R P + + E + Y IRQ+
Sbjct: 536 HASGAAASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQK 589
>Os06g0218500 MCM family protein
Length = 674
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 161/478 (33%), Positives = 242/478 (50%), Gaps = 49/478 (10%)
Query: 149 TIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECG--FEIYQEVTA--RVFMPL 204
+I +V+ + G L+ + G V R VK + Y C +C F ++ E+ A R+ +P
Sbjct: 129 SIGKVRVKHRGTLLTLKGTVIRSGGVKMIEGERKYQCRKCKCRFTVHPELEAGNRITLP- 187
Query: 205 FECPSQRCKLNKAKG----NLILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRG 260
CK AKG N L + +QE+K+QE + + G IPRS+ + L
Sbjct: 188 -----ASCKSKSAKGCGGANFQLIEDSITCHDYQEIKIQENIQLLGVGSIPRSMPIILMD 242
Query: 261 ELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESMSITHFKKKYEEYELKGDE 320
+L V GD V ++G + +R+ L + M I +F ++ E LK D
Sbjct: 243 DLVDIVKAGDDVVVTGRLSAKWSPDIKDVRSNL------DPMLIANFVRRTNE--LKSDL 294
Query: 321 QEQIDRLAEDGDIY-----------NKLARSLAPEIFGHEDVKKAXXXXXVGAPHRKLTD 369
++ + + + + N + + + P+I+G VK A +G
Sbjct: 295 DIPVEIINKFEEFWAASRATPLKGRNSILKGICPQIYGLFTVKLAVALTLIGGVQHVDAS 354
Query: 370 GMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEF 429
G K+RG+ H+ L+GDPG KSQ LK ++ R V TTG GS+ GLT KD E+
Sbjct: 355 GTKVRGEPHMLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD--GGEW 412
Query: 430 VLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAA 489
+LE GALVLAD G+C IDEFD M E DRT IHE MEQQT+SIAKAG+ T+LN RT V A
Sbjct: 413 MLEAGALVLADGGLCCIDEFDSMREHDRTTIHEAMEQQTISIAKAGLVTTLNTRTTVFGA 472
Query: 490 ANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVHQNLE-- 547
NP G+YD + + N L LLSRFD++ ++LD + + D ++ H+ + +N E
Sbjct: 473 TNPK-GQYDPNESLSVNTTLSGPLLSRFDIVLVLLDTKNKKWDKIVSSHI--LAENTEEK 529
Query: 548 -----SPALGFTPLEPPVLRAYISTARR-VVPSVPRELEEYIATAYSSIRQEEAKSNA 599
P + +T +LR YI ++ P + +E E I++ Y RQ ++ A
Sbjct: 530 KGKTSDPEVMWT---LSMLRRYIHYVKQHFKPVLTKEAERVISSYYQRQRQSGTRNAA 584
>Os05g0464100 MCM family protein
Length = 481
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 179/357 (50%), Gaps = 42/357 (11%)
Query: 136 EVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQE 195
++ I+ ++ + ++ +KA+ I +LV + G V + S VKPL+ + C +C + +
Sbjct: 125 KINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRV 184
Query: 196 VTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELA--EHVPKGHIPRS 253
F P C Q CK I +K + FQ++++QELA E +G +PR+
Sbjct: 185 FCDGKFSPPVSCSIQGCKSR----TFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT 240
Query: 254 LTVHLRGELTRKVAPGDVVEMSGIFLPMPYY-----GFRAMRAGLVADTYLESMSITHFK 308
+ L +L PG+ V ++GI + Y G R + YLE++S+ + K
Sbjct: 241 IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK 300
Query: 309 -----------------KKYEEYELKGDEQEQIDRLAED--GDIYNKLARSLAPEIFGHE 349
+ + E +L E I + E+ D++ ++ S P I+GHE
Sbjct: 301 VHAASGNSDAASGSFGFQAFTEKDL-----EFISKFKEEHGADVFRQILHSFCPSIYGHE 355
Query: 350 DVKKAXXXXXVGAPHRKLTDGMKI--RGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT 407
VK G + D K+ RGD+H ++GDPG+ KSQLL+ V+PRG+Y
Sbjct: 356 LVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVC 415
Query: 408 GRGSSGVGLTAAVQKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVM 464
G ++ GLT AV KD ++N++ E GA+VLAD GIC IDEFDKM +A H+V+
Sbjct: 416 GNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKM-----SAEHQVL 467
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 385 PGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGG----ALVLAD 440
P +A SQL + ++ +A + TTGR SSGVGL AAV D T E GG A+VLAD
Sbjct: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
Query: 441 MGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNAR 483
IDEFDKM + DR AIH V+E +TV+I AGI SLNAR
Sbjct: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,026,640
Number of extensions: 886435
Number of successful extensions: 2279
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 11
Length of query: 725
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 617
Effective length of database: 11,396,689
Effective search space: 7031757113
Effective search space used: 7031757113
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)