Os05g0476200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).
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Os05g0476200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.83 | 0.769 | 2.94 | 1.22 | 0.157 | -3.97 | -1.15 | 24 | 0.14 | 3.83 | 999.6 | 257 | -- | -- |
| 275.39 | 0.779 | 3.19 | -0.14 | 0.137 | 0.225 | -1.24 | -- | 0.138 | 3.96 | 999.6 | 257 | -- | -- |
| 270.9 | 0.767 | 2.93 | 1.32 | 0.166 | -4.11 | -- | 24.7 | 0.146 | 1.66 | 999.5 | 107 | -- | -- |
| 277.67 | 0.776 | 3.18 | -0.152 | 0.145 | 0.331 | -- | -- | 0.157 | 3.48 | 1002 | 351 | -- | -- |
| 271.56 | 0.772 | 2.91 | 1.41 | -- | -4.78 | -- | 28.4 | 0.146 | -- | 999.3 | 73 | -- | -- |
| 276.7 | 0.78 | 3.19 | -0.102 | 0.134 | -- | -1.25 | -- | 0.124 | 3.96 | -- | -- | -- | -- |
| 280.86 | 0.785 | 3.19 | -0.0868 | 0.144 | -- | -- | -- | 0.131 | 1.69 | -- | -- | -- | -- |
| 278.89 | 0.778 | 3.18 | -0.115 | -- | 0.305 | -- | -- | 0.165 | -- | 1002 | 351 | -- | -- |
| 277.84 | 0.776 | 3.18 | -- | 0.15 | 0.302 | -- | -- | 0.185 | 2.38 | 1002 | 354 | -- | -- |
| 282.13 | 0.785 | 3.19 | -0.081 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 281.06 | 0.784 | 3.19 | -- | 0.143 | -- | -- | -- | 0.141 | 1.67 | -- | -- | -- | -- |
| 279.22 | 0.778 | 3.18 | -- | -- | 0.296 | -- | -- | 0.18 | -- | 1002 | 351 | -- | -- |
| 282.3 | 0.784 | 3.19 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.59 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 7 | 3 |
| 2 | 257.70 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 4 | 257.74 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 7 | 257.75 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 37 | 258.69 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 38 | 258.69 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 9 |
| 43 | 258.74 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 75 | 259.29 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 80 | 259.42 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 87 | 259.92 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 95 | 260.19 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 2 | 3 |
| 124 | 261.11 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 125 | 261.15 | humidity | 90.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 129 | 261.18 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 22 | 10 |
| 140 | 261.41 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 149 | 261.48 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 161 | 261.59 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 2 | 9 |
| 181 | 261.82 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 5 | NA |
| 186 | 261.84 | wind | 9.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 196 | 262.00 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 198 | 262.00 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 275 | 262.67 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 5 | NA |
| 286 | 262.82 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 305 | 262.92 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 318 | 263.03 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 319 | 263.03 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 327 | 263.09 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 342 | 263.19 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 8 | NA |
| 363 | 263.38 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 364 | 263.38 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 368 | 263.42 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 9 | NA |
| 378 | 263.55 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 379 | 263.56 | wind | 9.0 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 400 | 263.75 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 22 |
| 409 | 263.83 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 437 | 264.05 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 441 | 264.09 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 23 |
| 443 | 264.10 | wind | 9.0 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 475 | 264.28 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 2 | 10 |
| 487 | 264.34 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 497 | 264.40 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 11 |
| 506 | 264.47 | humidity | 50.0 | 90 | > th | dose independent | rect. | 11 | 10 |
| 510 | 264.52 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 524 | 264.52 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 560 | 264.66 | wind | 9.0 | 1440 | > th | dose independent | rect. | 19 | 15 |
| 588 | 264.79 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 601 | 264.89 | temperature | 25.0 | 30 | < th | dose independent | rect. | 21 | 6 |
| 602 | 264.89 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 606 | 264.94 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 21 | 16 |
| 634 | 265.12 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 2 |
| 642 | 265.17 | wind | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 652 | 265.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 675 | 265.35 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 24 | 14 |
| 677 | 265.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 705 | 265.50 | wind | 9.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 719 | 265.50 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 768 | 265.53 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 779 | 265.56 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 795 | 265.63 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 797 | 265.66 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 806 | 265.68 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 807 | 265.69 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 816 | 265.71 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 14 |
| 874 | 265.91 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 14 |
| 909 | 266.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 21 |