BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0476200 Os05g0476200|AK063430
(770 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0476200 Similar to DNA replication licensing factor MC... 1554 0.0
AK110122 572 e-163
Os11g0484300 Similar to Mcm2-prov protein 352 7e-97
Os02g0797400 MCM family protein 332 9e-91
AK110005 329 5e-90
Os12g0560700 Similar to PROLIFERA protein 328 7e-90
Os05g0235800 MCM protein 6 family protein 299 6e-81
Os06g0218500 MCM family protein 244 2e-64
Os05g0464100 MCM family protein 169 8e-42
Os05g0173700 Similar to DNA replication licensing factor MC... 138 1e-32
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 1554 bits (4023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/770 (98%), Positives = 755/770 (98%)
Query: 1 MDVNEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARR 60
MDVNEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARR
Sbjct: 1 MDVNEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARR 60
Query: 61 VIRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSGPFGFHRVTPRDLMSSFIGTM 120
VIRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSGPFGFHRVTPRDLMSSFIGTM
Sbjct: 61 VIRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSGPFGFHRVTPRDLMSSFIGTM 120
Query: 121 VCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLL 180
VCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLL
Sbjct: 121 VCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLL 180
Query: 181 VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKAL 240
VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKAL
Sbjct: 181 VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKAL 240
Query: 241 PGKSKGSVSGVFRTVLIANNVSLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAP 300
PGKSKGSVSGVFRTVLIANNVSLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAP
Sbjct: 241 PGKSKGSVSGVFRTVLIANNVSLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAP 300
Query: 301 SIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLA 360
SIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLA
Sbjct: 301 SIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLA 360
Query: 361 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 420
ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV
Sbjct: 361 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 420
Query: 421 MEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 480
MEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV
Sbjct: 421 MEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 480
Query: 481 LDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQ 540
LDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQ
Sbjct: 481 LDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQ 540
Query: 541 DRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGG 600
DRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGG
Sbjct: 541 DRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGG 600
Query: 601 TLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKELTXXXXXXXXXX 660
TLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKELT
Sbjct: 601 TLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKELTEMEEREQREM 660
Query: 661 XXXXXADHDAGASGGNADEHRSSGNDPMDVDVGNASNDQDVPAERIEAFEAILGQHVLAN 720
ADHDAGASGGNADEHRSSGNDPMDVDVGNASNDQDVPAERIEAFEAILGQHVLAN
Sbjct: 661 EMKQQADHDAGASGGNADEHRSSGNDPMDVDVGNASNDQDVPAERIEAFEAILGQHVLAN 720
Query: 721 HLDQISIDEIEQTVNREAAAPYNRRQVEFILERMQDANRIMIRDGIVRII 770
HLDQISIDEIEQTVNREAAAPYNRRQVEFILERMQDANRIMIRDGIVRII
Sbjct: 721 HLDQISIDEIEQTVNREAAAPYNRRQVEFILERMQDANRIMIRDGIVRII 770
>AK110122
Length = 568
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 294/506 (58%), Positives = 378/506 (74%), Gaps = 14/506 (2%)
Query: 5 EEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRS 64
++ + +R F +FL +D Y AVR M++ RLII +DDLR+++ + A ++
Sbjct: 18 DDLLRGRQRVFSEFLSKDE----YQDAVRRMLRMDARRLIINIDDLRSYNREFATGLLNE 73
Query: 65 PAEYMQPASDAVTEVARNLDPKFLKE---GQRVLVGFSGPFGFHRVTPRDLMSSFIGTMV 121
P E++ PA DA V+ L +K+ ++ +G G FG H V PR L S +G M+
Sbjct: 74 PNEFL-PAFDAALHVSVELAHNAIKDDIKNKQYYIGLRGSFGDHHVNPRTLRSIHLGKMM 132
Query: 122 CVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGS-VYPTRDENGNLL 180
+EGIVT+CSLVRPK++KSVHYC T REYRD T + LP S VYPT DE+GN L
Sbjct: 133 SLEGIVTRCSLVRPKILKSVHYCENTAKFHQREYRDATMYGTLPPSSTVYPTEDESGNRL 192
Query: 181 VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKAL 240
TEYG +++DHQ +S+QE+PE + PGQLPR++D++++DD+VD CKPGDR+ +VG+Y++L
Sbjct: 193 TTEYGHSQFRDHQMISIQEMPERAPPGQLPRSIDVVMDDDMVDRCKPGDRIQLVGMYRSL 252
Query: 241 PGKSKGSVSGVFRTVLIANNVSLMNKEANAPV----YTREDLKRMKEISRRNDTFDLLGN 296
+ S S FRT++I NN++L++ +A + T D++ + +I++R + F+LL
Sbjct: 253 GNRVGQSSSSTFRTLMIGNNINLLSSKAGGGIAQAHITDTDIRNINKIAKRKNVFNLLSQ 312
Query: 297 SLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNI 356
SLAPSIYGH +IKKAV LL+LGG EKNL NGTH+RGDIN++MVGDPS AKSQ+LR V+N
Sbjct: 313 SLAPSIYGHEYIKKAV-LLLLGGEEKNLPNGTHIRGDINILMVGDPSTAKSQMLRFVLNT 371
Query: 357 APLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVA 416
APLAI+TTGRGSSGVGLTAAVT+D+ETGERRLEAGAMVLADRGV+CIDEFDKM+D DRVA
Sbjct: 372 APLAIATTGRGSSGVGLTAAVTTDKETGERRLEAGAMVLADRGVICIDEFDKMSDVDRVA 431
Query: 417 IHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 476
I+EVMEQQTVTIAKAGIH SLNARCSV+AAANPIYG YD P KNI LPDSLLSRFDL
Sbjct: 432 IYEVMEQQTVTIAKAGIHTSLNARCSVVAAANPIYGQYDVHKDPHKNIALPDSLLSRFDL 491
Query: 477 LFIVLDQMDPEIDRQISEHVARMHRY 502
LF+V D +D + DR ISEHV RMHRY
Sbjct: 492 LFVVTDDVDEQHDRMISEHVLRMHRY 517
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 352 bits (903), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 227/619 (36%), Positives = 342/619 (55%), Gaps = 31/619 (5%)
Query: 24 GKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRSPAEYMQPASDAVTEVARNL 83
G+ Y++ + +MV + L I ++A + +P ++ + V +L
Sbjct: 262 GEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDL 321
Query: 84 DPKFLKEGQRVLVGFSGPFGFHRVTPRDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHY 143
+ Q++ V + + ++ R++ + TM+ + G+VT+ S V P++ +
Sbjct: 322 HKNYRNIHQKIYVRITNLPVYDQI--RNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFD 379
Query: 144 CPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPEN 203
C G L +++ S+ + GS + + + E + Y+++Q L++QE P
Sbjct: 380 CSKCGTVLGPFFQN--SYTEVKVGSCPECQSKGPFTINVEQTI--YRNYQKLTLQESPGI 435
Query: 204 SAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKALPGKSKGSVSG--VFRTVLIANNV 261
G+LPR ++I+ +DL+D +PG+ + + G+Y S + +G VF TV+ AN V
Sbjct: 436 VPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYV 495
Query: 262 SLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVE 321
+ +A T ED ++++++ + + S+APSIYGH IK A+ L M GG E
Sbjct: 496 AKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQE 555
Query: 322 KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQ 381
KN+K LRGDIN++++GDP AKSQ L+ V A+ TTG+G+S VGLTAAV D
Sbjct: 556 KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDP 615
Query: 382 ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 441
T E LE GA+VLADRG+ IDEFDKMNDQDRV+IHE MEQQ+++I+KAGI SL ARC
Sbjct: 616 VTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 675
Query: 442 SVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHR 501
SVIAAANPI G YD S T T+N+ L D ++SRFD+L +V D +DP D ++ V H
Sbjct: 676 SVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHA 735
Query: 502 YCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDRRRGKKSKQDRLTVKFLKKY 561
+ GA D+ EDD A +++ D L+ LKKY
Sbjct: 736 R-SQPKGANLEDRVPTDVEDDPLAAA------------------RQADPDILSQDMLKKY 776
Query: 562 IHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGGTLPITARTLETIIRLSTAHAK 621
I YAK + P++ D D I+ YAELR S G +PI R +E+IIR+S AHA+
Sbjct: 777 ITYAKLNVFPKIHDADLDKISHVYAELR----RESSHGQGVPIAVRHIESIIRMSEAHAR 832
Query: 622 MKLRHEVLKTDVEAALQVL 640
M LR V + DV+ A++VL
Sbjct: 833 MHLRSYVSQEDVDMAIRVL 851
>Os02g0797400 MCM family protein
Length = 729
Score = 332 bits (850), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 221/655 (33%), Positives = 332/655 (50%), Gaps = 71/655 (10%)
Query: 13 RAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRSPAEYMQPA 72
R F +FL G +V N+ H + + ++DL +L+ ++ +SPA+Y+
Sbjct: 37 RKFKEFLRGFTGPTGDFPYRESLVHNRDH-VTVAIEDLDAFDAELSDKIRKSPADYLPLF 95
Query: 73 SDAVTEVARNLDPKFLKEGQRVLVGFSGPFGFHRVTPRDLMS------SFIGTMVCVEGI 126
A +EV +L K E + +G + + +S ++ +V + GI
Sbjct: 96 ETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGI 155
Query: 127 VTKCSLVRPKV------------VKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRD 174
S V+ K VK+V P GG + D G + P
Sbjct: 156 TIAASRVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDP--- 212
Query: 175 ENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIV 234
+ +Y D QTL +QE PE+ G+LPR + + V+ LV + PG R++++
Sbjct: 213 -----WIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVI 267
Query: 235 GVYKALPGKS--KGSVSGVFRTVLIANNVSLMNKEANAPV-YTREDLKRMKEISRRNDTF 291
G+Y + KG+V + + + +N P +T ++ KE ++R D +
Sbjct: 268 GIYSVYQASANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDAY 327
Query: 292 DLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLR 351
+ + + PSIYGH +KKA+ L+ GG +K L +G LRGDI+++++GDPS AKSQ L+
Sbjct: 328 VKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLK 387
Query: 352 AVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 411
V AP+A+ T+G+GSS GLTA+V D + E LE GAMVLAD GVVCIDEFDKM
Sbjct: 388 FVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 447
Query: 412 QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLL 471
+DRVAIHE MEQQT++IAKAGI LN+R SV+AAANPI G YD T NI L ++L
Sbjct: 448 EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTIL 507
Query: 472 SRFDLLFIVLDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFV 531
SRFDL+FIV D + D++I+ H+ ++H G A S T +E ++
Sbjct: 508 SRFDLIFIVKDVRMYDQDKRIASHIIKVHA----SGAAASSKNTDASEGEN--------- 554
Query: 532 KYDRMLHGQDRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDG 591
+LK+YI Y + +PRL+++A++ + Y E+R
Sbjct: 555 -------------------------WLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQK 589
Query: 592 ---GANAKSGGGTLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFA 643
A+ +PIT R LE IIRLS + AKM+L VE A ++ N +
Sbjct: 590 MRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVS 644
>AK110005
Length = 954
Score = 329 bits (843), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 226/640 (35%), Positives = 335/640 (52%), Gaps = 45/640 (7%)
Query: 5 EEAMAAHKRAFLDFLDQDV---GKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRV 61
E+ A R F +FL V G VY Q ++ + + L I L + LA +
Sbjct: 221 EDVRRAIVREFRNFLVTYVDENGVSVYGQRIKTLGETNAESLEISFLHLVDSKAILAYFL 280
Query: 62 IRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSG-PFGFHRVTPRDLMSSFIGTM 120
SPA + + +V P + + V V + P T RDL + ++
Sbjct: 281 ANSPASMLPIFDEVAFDVIMLYYPSYDRIHSEVHVRIADLPTS---STLRDLRQGHLNSL 337
Query: 121 VCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLL 180
V V G+VT+ S V P++ C G L ++D + + Y + E
Sbjct: 338 VRVSGVVTRRSGVFPQLKYVKFDCLKCGAVLGPFWQDANQEIKIS----YCSNCEQRGPF 393
Query: 181 VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKAL 240
Y+++Q +++QE P + PG+LPR ++I+ DL+DS KPG+ V I GVY+
Sbjct: 394 RINSEQTVYRNYQKMTLQESPGSVPPGRLPRHREVILLWDLIDSAKPGEEVEITGVYRNN 453
Query: 241 PGKSKGSVSG--VFRTVLIANNVSLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSL 298
S + +G VF TVL AN+++ + +A T ED +++K +++ + S+
Sbjct: 454 FDASLNTKNGFPVFATVLEANHIAKRDDAFSAFRLTEEDERQIKALAKDERIGKRIIKSI 513
Query: 299 APSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAP 358
APSIYGH IK A+ L + GGV K++ +RGDIN++++GDP AKSQ L+ V A
Sbjct: 514 APSIYGHEDIKTAIALSLFGGVSKDIGGKHRIRGDINVLLLGDPGTAKSQFLKYVEKTAS 573
Query: 359 LAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIH 418
A+ TTG+G+S VGLTA+V D T E LE GA+VLAD+GV IDEFDKMND DR +IH
Sbjct: 574 RAVFTTGQGASAVGLTASVRKDPVTREWTLEGGALVLADKGVCLIDEFDKMNDADRTSIH 633
Query: 419 EVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLF 478
E MEQQ ++I+KAGI +L ARC+++AAANPI G Y+ ++ +N+ L + +LSRFD L
Sbjct: 634 EAMEQQQISISKAGIVTTLQARCAIVAAANPIRGRYNPTIPFNQNVELTEPILSRFDALC 693
Query: 479 IVLDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLH 538
+V D +DP D ++ V H RS K + +E D + A
Sbjct: 694 VVKDTVDPVKDDMLARFVVGSH--------LRSHPK--FDDETDEQLVATSL-------- 735
Query: 539 GQDRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSG 598
D L LKKYI YA++ ++P L D I+ YA+LR +
Sbjct: 736 ----------DADILPQDLLKKYIMYARDHVRPSLNALDQDRISRLYADLRRESIST--- 782
Query: 599 GGTLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQ 638
G+ PIT R LE++IR++ A AKM LR V D++ A++
Sbjct: 783 -GSFPITVRHLESMIRMAEASAKMHLRDYVRTDDIDVAIR 821
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 328 bits (842), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 200/552 (36%), Positives = 310/552 (56%), Gaps = 56/552 (10%)
Query: 103 GFHRVTP---RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDIT 159
F +VTP R + +S IG +V + GIVT+CS V+P + +V+ C G + Y+++T
Sbjct: 141 AFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEI---YQEVT 197
Query: 160 SFVGLPTGSVYPTR----DENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDI 215
+ V +P R GNL++ + ++ Q + +QE+ E+ G +PR++ +
Sbjct: 198 ARVFMPLFECPSQRCKLNKAKGNLIL-QLRASKFLKFQEVKLQELAEHVPKGHIPRSLTV 256
Query: 216 IVEDDLVDSCKPGDRVSIVGVYKALP--GKSKGSVSGVFRTVLIANNVSLMNKEANAPVY 273
+ +L PGD V + G++ +P G V T L + +++ K+
Sbjct: 257 HLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESMSITHFKKKYEEYEL 316
Query: 274 TREDLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGD 333
++ +++ ++ D ++ L SLAP I+GH +KKA++LL++G + L +G +RGD
Sbjct: 317 KGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLTDGMKIRGD 376
Query: 334 INMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAM 393
+++ ++GDP VAKSQLL+ ++N+AP + TTGRGSSGVGLTAAV D T E LE GA+
Sbjct: 377 LHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGAL 436
Query: 394 VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGT 453
VLAD G+ IDEFDKM + DR AIHEVMEQQTV+IAKAGI SLNAR +V+AAANP +G
Sbjct: 437 VLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGR 496
Query: 454 YDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCTDDGGARSLD 513
YD TP +NI LP +LLSRFDLL+++LD+ D E D +++ HV +H+
Sbjct: 497 YDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVHQNLESPA------ 550
Query: 514 KTGYAEEDDGDVNAAIFVKYDRMLHGQDRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRL 573
G+ L L+ YI A+ ++ P +
Sbjct: 551 -LGFTP---------------------------------LEPPVLRAYISTARRVV-PSV 575
Query: 574 TDEASDHIATSYAELRDGGANAKSGGGTLPITARTLETIIRLSTAHAKMKLRHEVLKTDV 633
E ++IAT+Y+ +R AKS T RTL +I+R+S A A+++ V ++DV
Sbjct: 576 PRELEEYIATAYSSIRQ--EEAKSNAPHSYTTIRTLLSILRISIALARLRFSETVAQSDV 633
Query: 634 EAALQVLNFAIY 645
+ AL+++ + Y
Sbjct: 634 DEALRLMQMSKY 645
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 192/589 (32%), Positives = 297/589 (50%), Gaps = 100/589 (16%)
Query: 110 RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSV 169
R+L ++ IG + V G+VT+ S VRP++++ C G + + + +
Sbjct: 125 RELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNA 184
Query: 170 YPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGD 229
LL E ++ D Q + MQE + G LPR++D+I+ ++V+ + GD
Sbjct: 185 TCQNRSKWALLRQE---SKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGD 241
Query: 230 RVSIVGVYKALP-----------------GKSKGSVSGV----------------FRTVL 256
V G A+P + + SGV +R
Sbjct: 242 TVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLAF 301
Query: 257 IANNVSLMN--------------KEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAPSI 302
+AN+V + + ++ +T E+ + + D F+ + +S+ P++
Sbjct: 302 VANSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMRNVPDFFNKIVDSICPTV 361
Query: 303 YGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAIS 362
+GH IK+A++L++LGGV K G +LRGDIN+ +VGDPS AKSQ L+ I P ++
Sbjct: 362 FGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVY 421
Query: 363 TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVME 422
T+G+ SS GLTA V + ETGE +EAGA++LAD G+ CIDEFDKM+ +D+VAIHE ME
Sbjct: 422 TSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAME 481
Query: 423 QQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 482
QQT++I KAGI A+LNAR S++AAANP G YD+S N+ LP ++LSRFDL++I++D
Sbjct: 482 QQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMID 541
Query: 483 QMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDR 542
+ D D I+ H+ R+H
Sbjct: 542 EPDENTDYHIAHHIVRVH------------------------------------------ 559
Query: 543 RRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGGT- 601
++ +++ + LK+YI +AK+L +P+L+ EA + SY LR G S GT
Sbjct: 560 QKREEALAPAFSTAELKRYIAFAKSL-KPQLSSEAKKVLVESYVTLRRG----DSTPGTR 614
Query: 602 --LPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKE 648
+T R LE +IRLS A A+ L VL V A+++L +I E
Sbjct: 615 VAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSIISVE 663
>Os06g0218500 MCM family protein
Length = 674
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 239/457 (52%), Gaps = 61/457 (13%)
Query: 191 DHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKALPGKSKGSVSG 250
D+Q + +QE + G +PR++ II+ DDLVD K GD V + G A V
Sbjct: 214 DYQEIKIQENIQLLGVGSIPRSMPIILMDDLVDIVKAGDDVVVTGRLSAKWSPDIKDVRS 273
Query: 251 VFRTVLIANNVSLMNK---EANAPVYTREDLKRMKEISRRNDTFDLLGNS-----LAPSI 302
+LIAN V N+ + + PV E + + +E + L G + + P I
Sbjct: 274 NLDPMLIANFVRRTNELKSDLDIPV---EIINKFEEFWAASRATPLKGRNSILKGICPQI 330
Query: 303 YGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAIS 362
YG +K AV L ++GGV+ +GT +RG+ +M++VGDP KSQ L+ ++ ++
Sbjct: 331 YGLFTVKLAVALTLIGGVQHVDASGTKVRGEPHMLLVGDPGTGKSQFLKFAAKLSNRSVI 390
Query: 363 TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVME 422
TTG GS+ GLT VT+ ++ GE LEAGA+VLAD G+ CIDEFD M + DR IHE ME
Sbjct: 391 TTGLGSTSAGLT--VTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRTTIHEAME 448
Query: 423 QQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 482
QQT++IAKAG+ +LN R +V A NP G YD + + + N L LLSRFD++ ++LD
Sbjct: 449 QQTISIAKAGLVTTLNTRTTVFGATNP-KGQYDPNESLSVNTTLSGPLLSRFDIVLVLLD 507
Query: 483 QMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDR 542
+ + D+ +S H+ + +
Sbjct: 508 TKNKKWDKIVSSHI---------------------------------------LAENTEE 528
Query: 543 RRGKKSKQDRL-TVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGA-NAKSGGG 600
++GK S + + T+ L++YIHY K +P LT EA I++ Y R G NA
Sbjct: 529 KKGKTSDPEVMWTLSMLRRYIHYVKQHFKPVLTKEAERVISSYYQRQRQSGTRNAAR--- 585
Query: 601 TLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAAL 637
T R LE++IRL+ AHA++ R++V K D AA+
Sbjct: 586 ---TTVRMLESLIRLAQAHARLMFRNDVTKLDAIAAI 619
>Os05g0464100 MCM family protein
Length = 481
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 173/340 (50%), Gaps = 47/340 (13%)
Query: 110 RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRD-------ITSFV 162
++L +++I +V V G V K S V+P V++ C R + D S
Sbjct: 140 KNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVFCDGKFSPPVSCSIQ 199
Query: 163 GLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVP--ENSAPGQLPRTVDIIVEDD 220
G + + P R + D Q + +QE+ E+ G++PRT++ + +D
Sbjct: 200 GCKSRTFIPMRS-----------TAKLMDFQKIRIQELASGESHEEGRVPRTIECELTED 248
Query: 221 LVDSCKPGDRVSIVGVYKAL-------PGKSKGSVSGVFRTVLIANNVSLMNKEANAP-- 271
LVD C PG+ V++ G+ K L GKSK G++ L A +S+ N + +A
Sbjct: 249 LVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEA--ISVRNSKVHAASG 306
Query: 272 ------------VYTREDLKRMKEISRRN--DTFDLLGNSLAPSIYGHLWIKKAVVLLML 317
+T +DL+ + + + D F + +S PSIYGH +K + L +
Sbjct: 307 NSDAASGSFGFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAGITLALF 366
Query: 318 GGVEKNL--KNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTA 375
GGV+K+ +N +RGDI+ ++VGDP + KSQLL+A ++P I G ++ GLT
Sbjct: 367 GGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGLTV 426
Query: 376 AVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRV 415
AV D + + EAGAMVLADRG+ CIDEFDKM+ + +V
Sbjct: 427 AVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 84/103 (81%), Gaps = 9/103 (8%)
Query: 342 PSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERR----LEAGAMVLAD 397
PS+A SQL RAVM IA +STTGR SSGVGL AAVTSD+ETGERR L AGA+VLAD
Sbjct: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
Query: 398 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 440
R VCIDEFDKMNDQDRVAIH V+E +TVTI AGIHASLNAR
Sbjct: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,577,598
Number of extensions: 1095645
Number of successful extensions: 2910
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2886
Number of HSP's successfully gapped: 10
Length of query: 770
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 661
Effective length of database: 11,344,475
Effective search space: 7498697975
Effective search space used: 7498697975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)