Os05g0235800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MCM protein 6 family protein.
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Os05g0235800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MCM protein 6 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.74 | 0.598 | 4.03 | -1.56 | 0.467 | 0.952 | -1.3 | -4.1 | -0.22 | 5.34 | 26.71 | 958 | -- | -- |
| 172 | 0.611 | 3.9 | -0.617 | 0.456 | 0.611 | -1.22 | -- | 0.085 | 4.56 | 27.4 | 895 | -- | -- |
| 165.57 | 0.599 | 4.02 | -1.54 | 0.411 | 0.959 | -- | -4.05 | -0.204 | 4.98 | 27.08 | 1043 | -- | -- |
| 175.58 | 0.617 | 3.91 | -0.601 | 0.475 | 0.643 | -- | -- | 0.106 | 4.92 | 27.4 | 862 | -- | -- |
| 173.5 | 0.613 | 4.03 | -1.57 | -- | 0.978 | -- | -4.07 | -0.213 | -- | 27.2 | 1104 | -- | -- |
| 182.38 | 0.633 | 3.89 | -0.457 | 0.428 | -- | -1.04 | -- | 0.188 | 3.42 | -- | -- | -- | -- |
| 185.73 | 0.638 | 3.88 | -0.438 | 0.422 | -- | -- | -- | 0.194 | 3.16 | -- | -- | -- | -- |
| 183.67 | 0.631 | 3.91 | -0.609 | -- | 0.6 | -- | -- | 0.0782 | -- | 27.5 | 1102 | -- | -- |
| 184.45 | 0.633 | 3.88 | -- | 0.488 | 0.498 | -- | -- | 0.196 | 4.8 | 28 | 836 | -- | -- |
| 195.84 | 0.654 | 3.88 | -0.42 | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
| 190.78 | 0.646 | 3.87 | -- | 0.413 | -- | -- | -- | 0.243 | 3.16 | -- | -- | -- | -- |
| 192.7 | 0.647 | 3.89 | -- | -- | 0.45 | -- | -- | 0.186 | -- | 28.1 | 1138 | -- | -- |
| 200.5 | 0.661 | 3.87 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 3 | 160.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 8 | 160.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 11 | 160.59 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 21 | 160.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 36 | 161.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 138 | 165.12 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 150 | 165.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 153 | 165.27 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 154 | 165.29 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 157 | 165.33 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 173 | 165.65 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 229 | 166.16 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 283 | 166.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 317 | 166.98 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 318 | 166.99 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 324 | 167.08 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 10 |
| 356 | 167.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 357 | 167.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 358 | 167.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 362 | 167.41 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 12 |
| 387 | 167.67 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 443 | 168.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 471 | 168.28 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 475 | 168.33 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 478 | 168.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 481 | 168.34 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 482 | 168.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 483 | 168.36 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 506 | 168.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 512 | 168.49 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 544 | 168.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 548 | 168.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 578 | 168.70 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 5 |
| 639 | 168.89 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 646 | 168.91 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 715 | 169.08 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 13 |
| 762 | 169.18 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 772 | 169.22 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 781 | 169.25 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 789 | 169.27 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 809 | 169.31 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 837 | 169.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 884 | 169.46 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 902 | 169.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 14 |
| 912 | 169.53 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 970 | 169.66 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 974 | 169.67 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 987 | 169.69 | wind | 1 | 43200 | < th | dose dependent | sin | 14 | NA |