BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0235800 Os05g0235800|AK102937
(830 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0235800 MCM protein 6 family protein 1642 0.0
Os02g0797400 MCM family protein 328 8e-90
Os11g0484300 Similar to Mcm2-prov protein 326 6e-89
AK110005 311 1e-84
Os05g0476200 Similar to DNA replication licensing factor MC... 298 1e-80
Os12g0560700 Similar to PROLIFERA protein 292 9e-79
AK110122 255 8e-68
Os06g0218500 MCM family protein 240 3e-63
Os05g0464100 MCM family protein 196 9e-50
Os05g0173700 Similar to DNA replication licensing factor MC... 81 4e-15
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 1642 bits (4252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/830 (96%), Positives = 799/830 (96%)
Query: 1 MEAFGGFFVDEKAARVENIFLEFLRRFKEADAAEAFYETELEAMRSRESTTMYVDFAHVM 60
MEAFGGFFVDEKAARVENIFLEFLRRFKEADAAEAFYETELEAMRSRESTTMYVDFAHVM
Sbjct: 1 MEAFGGFFVDEKAARVENIFLEFLRRFKEADAAEAFYETELEAMRSRESTTMYVDFAHVM 60
Query: 61 RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRTGENRAPIISDDSPNKDINIAFYNIPM 120
RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRTGENRAPIISDDSPNKDINIAFYNIPM
Sbjct: 61 RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRTGENRAPIISDDSPNKDINIAFYNIPM 120
Query: 121 LKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPII 180
LKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPII
Sbjct: 121 LKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPII 180
Query: 181 CVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAG 240
CVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAG
Sbjct: 181 CVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAG 240
Query: 241 DTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLA 300
DTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLA
Sbjct: 241 DTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLA 300
Query: 301 FVANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMRNVPDFFNKIVDSICPT 360
FVANSVQVA QKFTEEEEDEVVRMRNVPDFFNKIVDSICPT
Sbjct: 301 FVANSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMRNVPDFFNKIVDSICPT 360
Query: 361 VFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSV 420
VFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSV
Sbjct: 361 VFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSV 420
Query: 421 YTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAM 480
YTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAM
Sbjct: 421 YTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAM 480
Query: 481 EQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMI 540
EQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMI
Sbjct: 481 EQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMI 540
Query: 541 DEPDENTDYHIAHHIVRVHQKREEALAPAFSTAELKRYIAFAKSLKPQLSSEAKKVLVES 600
DEPDENTDYHIAHHIVRVHQKREEALAPAFSTAELKRYIAFAKSLKPQLSSEAKKVLVES
Sbjct: 541 DEPDENTDYHIAHHIVRVHQKREEALAPAFSTAELKRYIAFAKSLKPQLSSEAKKVLVES 600
Query: 601 YVTLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSII 660
YVTLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSII
Sbjct: 601 YVTLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSII 660
Query: 661 SVESSEVDLSDFQDADDGTNVPADNDAGQPTEMDAAPQQDGPENEQAADTGKKKLVITEE 720
SVESSEVDLSDFQDADDGTNVPADNDAGQPTEMDAAPQQDGPENEQAADTGKKKLVITEE
Sbjct: 661 SVESSEVDLSDFQDADDGTNVPADNDAGQPTEMDAAPQQDGPENEQAADTGKKKLVITEE 720
Query: 721 HFQRVTQALVMRLRQHEESVTKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTAEVKEEVK 780
HFQRVTQALVMRLRQHEESVTKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTAEVKEEVK
Sbjct: 721 HFQRVTQALVMRLRQHEESVTKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTAEVKEEVK 780
Query: 781 CIKAIIERLIQRDGHLIVIDEXXXXXXXXXXXRRTSESRILAVNPNYVID 830
CIKAIIERLIQRDGHLIVIDE RRTSESRILAVNPNYVID
Sbjct: 781 CIKAIIERLIQRDGHLIVIDEGAAPAADDGAARRTSESRILAVNPNYVID 830
>Os02g0797400 MCM family protein
Length = 729
Score = 328 bits (842), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 227/674 (33%), Positives = 335/674 (49%), Gaps = 83/674 (12%)
Query: 20 FLEFLRRFKEADAAEAFYETELEAMRSRESTTMYVDFAHVMRFNDVLQKAISEEYLRFEP 79
F EFLR F + E+ + +R+ T+ ++ + F+ L I + + P
Sbjct: 39 FKEFLRGFTGPTGDFPYRES---LVHNRDHVTVAIE--DLDAFDAELSDKIRKSPADYLP 93
Query: 80 YLRNACKRFVMEQR------TGENRAPIISDDSPNKDINIAFYNIPMLKRLRELGTAEIG 133
A + R TGE P D + I + +R +G +
Sbjct: 94 LFETAASEVLASLRSKVAGETGEMEEPATGD------VQIFLSSKENCLSMRSIGADYMS 147
Query: 134 KLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNATCQNRSK-- 191
KL + G+ S V+ + T C +C +V K V + I V +C + +
Sbjct: 148 KLVKIAGITIAASRVKAKATHVTLLCKNCRSV-KTVPCRPGLGGAI--VPRSCDHVPQPG 204
Query: 192 --------WALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGDTV 243
W + +SK+ D Q +++QE +++P G LPR++ + + +V+
Sbjct: 205 EEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQ-------T 257
Query: 244 IFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLAFVA 303
I GT + V + ++ S Q+G G+K +R + + A
Sbjct: 258 IVPGTRLTVIGIYSVY----------------QASANQKGAVGVKQPYIRVVGLEQSRDA 301
Query: 304 NSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMRNVPDFFNKIVDSICPTVFG 363
NS FT +EE E PD + KI I P+++G
Sbjct: 302 NS---------------------NGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYG 340
Query: 364 HQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTS 423
H ++K+AI +L GG K +G+ LRGDI+V ++GDPS AKSQFLK+ P +VYTS
Sbjct: 341 HSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTS 400
Query: 424 GKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQ 483
GK SSAAGLTA+V ++ + EF +E GA++LAD G+ CIDEFDKM +D+VAIHEAMEQQ
Sbjct: 401 GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQ 460
Query: 484 TISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDEP 543
TISI KAGI LN+RTS+LAAANP GRYD K + N+ L ILSRFDL++I+ D
Sbjct: 461 TISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVR 520
Query: 544 DENTDYHIAHHIVRVHQKREEALAPAFSTAE----LKRYIAFAK-SLKPQLSSEAKKVLV 598
+ D IA HI++VH A + +E LKRYI + + + KP+LS +A ++L
Sbjct: 521 MYDQDKRIASHIIKVHASGAAASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQ 580
Query: 599 ESYV----TLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKL 654
YV +R+ G A +TVRQLEA+IRLSE++A+ L V P HV A +L
Sbjct: 581 NKYVEIRQKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRL 640
Query: 655 LKTSIISVESSEVD 668
S + S ++
Sbjct: 641 FNVSTVDAARSGIN 654
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 326 bits (835), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 210/580 (36%), Positives = 308/580 (53%), Gaps = 73/580 (12%)
Query: 108 NKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVK 167
++ I + N+P+ ++R + + + + GVVTR S V P+L Q F C CG V+
Sbjct: 329 HQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLG 388
Query: 168 NVEQQFKYTEPIICVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDV 227
Q YTE + CQ++ + + +++ + ++Q++ +QE+ +PAG LPR +V
Sbjct: 389 PFFQN-SYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEV 447
Query: 228 ILRHEIVEKARAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGL 287
IL +++++ AR G+ + TG D+ T KNG V
Sbjct: 448 ILLNDLIDCARPGEEIEVTGIYTNNFDLSLNT---------------KNGFPV------- 485
Query: 288 KSLGVRDLSYRLAFVANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMRNVP 347
A V + VA K T+E++ E+ ++ P
Sbjct: 486 -----------FATVVEANYVAKKQDLFSAY------------KLTDEDKAEIEKLAKDP 522
Query: 348 DFFNKIVDSICPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQ 407
+IV SI P+++GH++IK AI L + GG K LRGDINV ++GDP AKSQ
Sbjct: 523 RIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQ 582
Query: 408 FLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDK 467
FLKY R+VYT+GK +SA GLTA V K+P T E+ +E GAL+LAD GIC IDEFDK
Sbjct: 583 FLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 642
Query: 468 MDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPP 527
M+ +D+V+IHEAMEQQ+ISI+KAGI +L AR S++AAANP GGRYD SK NV L
Sbjct: 643 MNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTD 702
Query: 528 AILSRFDLVYIMIDEPDENTDYHIAHHIVRVHQK----------------REEALAPA-- 569
I+SRFD++ ++ D D TD +A +V H + ++ LA A
Sbjct: 703 PIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQ 762
Query: 570 -----FSTAELKRYIAFAK-SLKPQLSSEAKKVLVESYVTLRRGDSTPGTRVAYRMTVRQ 623
S LK+YI +AK ++ P++ + Y LRR +S+ G V + VR
Sbjct: 763 ADPDILSQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELRR-ESSHGQGVP--IAVRH 819
Query: 624 LEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSIISVE 663
+E++IR+SEA AR HL V V MA+++L S IS +
Sbjct: 820 IESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFISTQ 859
>AK110005
Length = 954
Score = 311 bits (798), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 203/584 (34%), Positives = 307/584 (52%), Gaps = 72/584 (12%)
Query: 103 SDDSPNKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDC 162
S D + ++++ ++P LR+L + L V GVVTR S V P+L F CL C
Sbjct: 305 SYDRIHSEVHVRIADLPTSSTLRDLRQGHLNSLVRVSGVVTRRSGVFPQLKYVKFDCLKC 364
Query: 163 GNVV----KNVEQQFKYTEPIICVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPA 218
G V+ ++ Q+ K + C N C+ R + + +++ + ++Q++ +QE+ +P
Sbjct: 365 GAVLGPFWQDANQEIKIS---YCSN--CEQRGPFRINSEQTVYRNYQKMTLQESPGSVPP 419
Query: 219 GSLPRSLDVILRHEIVEKARAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGS 278
G LPR +VIL ++++ A+ G+ V TG D T KNG
Sbjct: 420 GRLPRHREVILLWDLIDSAKPGEEVEITGVYRNNFDASLNT---------------KNGF 464
Query: 279 GVQEGVKGLKSLGVRDLSYRLAFVANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEED 338
V V + RD ++ AF + TEE+E
Sbjct: 465 PVFATVLEANHIAKRDDAFS-AF-----------------------------RLTEEDER 494
Query: 339 EVVRMRNVPDFFNKIVDSICPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIV 398
++ + +I+ SI P+++GH++IK AI L L GGV K +RGDINV ++
Sbjct: 495 QIKALAKDERIGKRIIKSIAPSIYGHEDIKTAIALSLFGGVSKDIGGKHRIRGDINVLLL 554
Query: 399 GDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNG 458
GDP AKSQFLKY R+V+T+G+ +SA GLTA+V K+P T E+ +E GAL+LAD G
Sbjct: 555 GDPGTAKSQFLKYVEKTASRAVFTTGQGASAVGLTASVRKDPVTREWTLEGGALVLADKG 614
Query: 459 ICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKP 518
+C IDEFDKM+ D+ +IHEAMEQQ ISI+KAGI TL AR +I+AAANP GRY+ + P
Sbjct: 615 VCLIDEFDKMNDADRTSIHEAMEQQQISISKAGIVTTLQARCAIVAAANPIRGRYNPTIP 674
Query: 519 LKYNVALPPAILSRFDLVYIMIDEPDENTDYHIAHHIV----RVHQK----REEALAPAF 570
NV L ILSRFD + ++ D D D +A +V R H K +E L
Sbjct: 675 FNQNVELTEPILSRFDALCVVKDTVDPVKDDMLARFVVGSHLRSHPKFDDETDEQLVATS 734
Query: 571 STAE------LKRYIAFAKS-LKPQLSSEAKKVLVESYVTLRRGDSTPGTRVAYRMTVRQ 623
A+ LK+YI +A+ ++P L++ + + Y LRR + G+ + +TVR
Sbjct: 735 LDADILPQDLLKKYIMYARDHVRPSLNALDQDRISRLYADLRRESISTGS---FPITVRH 791
Query: 624 LEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSIISVESSEV 667
LE++IR++EA A+ HL V + +A++ S +S + V
Sbjct: 792 LESMIRMAEASAKMHLRDYVRTDDIDVAIRATVESFVSAQKMSV 835
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 298 bits (764), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 192/589 (32%), Positives = 294/589 (49%), Gaps = 100/589 (16%)
Query: 125 RELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNA 184
R+L ++ IG + V G+VT+ S VRP++++ C G + + + +
Sbjct: 110 RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITSFVGLPTGSV 169
Query: 185 TCQNRSKWALLRQE---SKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGD 241
LL E ++ D Q + MQE + G LPR++D+I+ ++V+ + GD
Sbjct: 170 YPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGD 229
Query: 242 TVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLAF 301
V G A+P + + SGV +R
Sbjct: 230 RVSIVGVYKALP-----------------GKSKGSVSGV----------------FRTVL 256
Query: 302 VANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMRNVPDFFNKIVDSICPTV 361
+AN+V + +T E+ + + D F+ + +S+ P++
Sbjct: 257 IANNVSLMNKEANAPV--------------YTREDLKRMKEISRRNDTFDLLGNSLAPSI 302
Query: 362 FGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVY 421
+GH IK+A++L++LGGV K G +LRGDIN+ +VGDPS AKSQ L+ I P ++
Sbjct: 303 YGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAIS 362
Query: 422 TSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAME 481
T+G+ SS GLTA V + ETGE +EAGA++LAD G+ CIDEFDKM+ +D+VAIHE ME
Sbjct: 363 TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVME 422
Query: 482 QQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMID 541
QQT++I KAGI A+LNAR S++AAANP G YD+S N+ LP ++LSRFDL++I++D
Sbjct: 423 QQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 482
Query: 542 EPDENTDYHIAHHIVRVH------------------------------------------ 559
+ D D I+ H+ R+H
Sbjct: 483 QMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDR 542
Query: 560 QKREEALAPAFSTAELKRYIAFAKSL-KPQLSSEAKKVLVESYVTLRRG----DSTPGTR 614
++ +++ + LK+YI +AK+L +P+L+ EA + SY LR G S GT
Sbjct: 543 RRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGGT- 601
Query: 615 VAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSIISVE 663
+T R LE +IRLS A A+ L VL V A+++L +I E
Sbjct: 602 --LPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKE 648
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 292 bits (747), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 234/363 (64%), Gaps = 6/363 (1%)
Query: 335 EEEDEVVRMRNVPDFFNKIVDSICPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDIN 394
+E++++ R+ D +NK+ S+ P +FGH+++K+A+LL+L+G H+ +G+ +RGD++
Sbjct: 319 DEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLTDGMKIRGDLH 378
Query: 395 VCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALML 454
+C++GDP AKSQ LK+ + PR VYT+G+ SS GLTA V K+P T EF +E GAL+L
Sbjct: 379 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGALVL 438
Query: 455 ADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYD 514
AD GIC IDEFDKM+ D+ AIHE MEQQT+SI KAGI +LNART++LAAANP GRYD
Sbjct: 439 ADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYD 498
Query: 515 KSKPLKYNVALPPAILSRFDLVYIMIDEPDENTDYHIAHHIVRVHQKREEALAPAFSTAE 574
+ N+ LPPA+LSRFDL+++++D D TD +A H+V VHQ E A F+ E
Sbjct: 499 MRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHVHQNLESP-ALGFTPLE 557
Query: 575 ---LKRYIAFAKSLKPQLSSEAKKVLVESYVTLRRGDSTPGTRVAYRMTVRQLEALIRLS 631
L+ YI+ A+ + P + E ++ + +Y ++R+ ++ +Y T+R L +++R+S
Sbjct: 558 PPVLRAYISTARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPHSY-TTIRTLLSILRIS 616
Query: 632 EAIARSHLERVVLPAHVRMAVKLLKTSIISVESSEVDLSDFQDADDGTNVPADNDAGQPT 691
A+AR V + V A++L++ S S+ S + S D ++ D +A +
Sbjct: 617 IALARLRFSETVAQSDVDEALRLMQMSKYSLYSDDRQRSGLDAISDIYSILRD-EAARTN 675
Query: 692 EMD 694
MD
Sbjct: 676 SMD 678
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 124 LRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPII-CV 182
+R++ + IG+L + G+VTR S+V+P + + C +CG + E + P+ C
Sbjct: 150 IRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQ-EVTARVFMPLFECP 208
Query: 183 NATCQ-NRSKWALLRQ--ESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARA 239
+ C+ N++K L+ Q SKF +Q V++QE ++ +P G +PRSL V LR E+ K
Sbjct: 209 SQRCKLNKAKGNLILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELTRKVAP 268
Query: 240 GDTVIFTGTVVAVP 253
GD V +G + +P
Sbjct: 269 GDVVEMSGIFLPMP 282
>AK110122
Length = 568
Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 251/473 (53%), Gaps = 57/473 (12%)
Query: 125 RELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFK-----YTEPI 179
R L + +GK+ ++ G+VTR S VRP++L+ C N K +++++ T P
Sbjct: 121 RTLRSIHLGKMMSLEGIVTRCSLVRPKILKSVHYC---ENTAKFHQREYRDATMYGTLPP 177
Query: 180 ICVNATCQNRSKWALLRQ--ESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKA 237
++ S L + S+F D Q + +QE + P G LPRS+DV++ ++V++
Sbjct: 178 SSTVYPTEDESGNRLTTEYGHSQFRDHQMISIQEMPERAPPGQLPRSIDVVMDDDMVDRC 237
Query: 238 RAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSY 297
+ GD + G ++ + + +S ++
Sbjct: 238 KPGDRIQLVGMYRSLGNRVGQSSSS---------------------------------TF 264
Query: 298 RLAFVANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMRNVPDFFNKIVDSI 357
R + N++ + T+ + + ++ + FN + S+
Sbjct: 265 RTLMIGNNINLLSSKAGGGIAQA----------HITDTDIRNINKIAKRKNVFNLLSQSL 314
Query: 358 CPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVP 417
P+++GH+ IK+A+LL LLGG K G ++RGDIN+ +VGDPS AKSQ L++ P
Sbjct: 315 APSIYGHEYIKKAVLL-LLGGEEKNLPNGTHIRGDINILMVGDPSTAKSQMLRFVLNTAP 373
Query: 418 RSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIH 477
++ T+G+ SS GLTA V + ETGE +EAGA++LAD G+ CIDEFDKM D+VAI+
Sbjct: 374 LAIATTGRGSSGVGLTAAVTTDKETGERRLEAGAMVLADRGVICIDEFDKMSDVDRVAIY 433
Query: 478 EAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVY 537
E MEQQT++I KAGI +LNAR S++AAANP G+YD K N+ALP ++LSRFDL++
Sbjct: 434 EVMEQQTVTIAKAGIHTSLNARCSVVAAANPIYGQYDVHKDPHKNIALPDSLLSRFDLLF 493
Query: 538 IMIDEPDENTDYHIAHHIVRVHQKREEAL---APAFSTAELKRYIAFAKSLKP 587
++ D+ DE D I+ H++R+H+ + L PA + A ++ P
Sbjct: 494 VVTDDVDEQHDRMISEHVLRMHRYLQPGLEEGTPAVDNLTRRSMWALPRARMP 546
>Os06g0218500 MCM family protein
Length = 674
Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 185/291 (63%), Gaps = 12/291 (4%)
Query: 351 NKIVDSICPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLK 410
N I+ ICP ++G +K A+ L L+GGV + G +RG+ ++ +VGDP KSQFLK
Sbjct: 320 NSILKGICPQIYGLFTVKLAVALTLIGGVQHVDASGTKVRGEPHMLLVGDPGTGKSQFLK 379
Query: 411 YTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 470
+ A + RSV T+G S++AGLT T K+ GE+ +EAGAL+LAD G+CCIDEFD M
Sbjct: 380 FAAKLSNRSVITTGLGSTSAGLTVTAVKD--GGEWMLEAGALVLADGGLCCIDEFDSMRE 437
Query: 471 KDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAIL 530
D+ IHEAMEQQTISI KAG+ TLN RT++ A NP G+YD ++ L N L +L
Sbjct: 438 HDRTTIHEAMEQQTISIAKAGLVTTLNTRTTVFGATNPK-GQYDPNESLSVNTTLSGPLL 496
Query: 531 SRFDLVYIMIDEPDENTDYHIAHHIV--RVHQKREEALAP--AFSTAELKRYIAFAKS-L 585
SRFD+V +++D ++ D ++ HI+ +K+ + P ++ + L+RYI + K
Sbjct: 497 SRFDIVLVLLDTKNKKWDKIVSSHILAENTEEKKGKTSDPEVMWTLSMLRRYIHYVKQHF 556
Query: 586 KPQLSSEAKKVLVESYVTLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIAR 636
KP L+ EA++V+ Y R+ GTR A R TVR LE+LIRL++A AR
Sbjct: 557 KPVLTKEAERVISSYYQRQRQS----GTRNAARTTVRMLESLIRLAQAHAR 603
>Os05g0464100 MCM family protein
Length = 481
Score = 196 bits (497), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 35/370 (9%)
Query: 111 INIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVE 170
INI YN L+ L A I KL V G V + S V+P +LQ F+C+ C V
Sbjct: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
Query: 171 QQFKYTEPIICVNATCQNRSKWALLRQESKFTDWQRVRMQE--TSKEIPAGSLPRSLDVI 228
K++ P+ C C++R+ + +R +K D+Q++R+QE + + G +PR+++
Sbjct: 186 CDGKFSPPVSCSIQGCKSRT-FIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRTIECE 244
Query: 229 LRHEIVEKARAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLK 288
L ++V+ G+TV TG V + + M + G +++ R + GL
Sbjct: 245 LTEDLVDCCIPGETVTVTGIVKVLNNYMDVG--GGKSKSRNQ---------------GLY 287
Query: 289 SLGVRDLSYRLAFVANSVQVAXXXXXXXXXXXXXXXXXXXXQKFTEEEEDEVVRMR--NV 346
L + +S R + V A Q FTE++ + + + + +
Sbjct: 288 YLYLEAISVR----NSKVHAASGNSDAASGSFGF-------QAFTEKDLEFISKFKEEHG 336
Query: 347 PDFFNKIVDSICPTVFGHQEIKRAILLMLLGGV--HKITHEGINLRGDINVCIVGDPSCA 404
D F +I+ S CP+++GH+ +K I L L GGV H I + +RGDI+ +VGDP
Sbjct: 337 ADVFRQILHSFCPSIYGHELVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLG 396
Query: 405 KSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDE 464
KSQ L+ A + PR +Y G +++ AGLT V K+ + ++ EAGA++LAD GICCIDE
Sbjct: 397 KSQLLQAAAAVSPRGIYVCGNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDE 456
Query: 465 FDKMDIKDQV 474
FDKM + QV
Sbjct: 457 FDKMSAEHQV 466
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 401 PSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGE----FCIEAGALMLAD 456
PS A SQ + ++ ++ T+G+ SS GL A V + ETGE + AGA++LAD
Sbjct: 2 PSIANSQLRR---AVMTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
Query: 457 NGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNAR 499
CIDEFDKM+ +D+VAIH +E +T++I AGI A+LNAR
Sbjct: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,921,518
Number of extensions: 997956
Number of successful extensions: 2902
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2885
Number of HSP's successfully gapped: 14
Length of query: 830
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 721
Effective length of database: 11,344,475
Effective search space: 8179366475
Effective search space used: 8179366475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)