Os06g0218500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MCM family protein.
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Os06g0218500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MCM family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.48 | 0.569 | 11.1 | -0.925 | 2.71 | -1.04 | 0.185 | -0.28 | -0.764 | 9.61 | 20.5 | 1311 | -- | -- |
| 146.57 | 0.564 | 11.1 | -0.894 | 2.7 | -1 | 0.228 | -- | -0.757 | 9.6 | 20.58 | 1276 | -- | -- |
| 146.57 | 0.564 | 11.1 | -0.925 | 2.7 | -1.03 | -- | -0.279 | -0.765 | 9.61 | 20.5 | 1276 | -- | -- |
| 146.73 | 0.564 | 11.1 | -0.872 | 2.7 | -1 | -- | -- | -0.756 | 9.61 | 20.57 | 1276 | -- | -- |
| 569.03 | 1.11 | 11.2 | -0.786 | -- | -1.4 | -- | -0.527 | -0.649 | -- | 20.9 | 2265 | -- | -- |
| 169.6 | 0.611 | 11.2 | -1.29 | 2.73 | -- | 0.223 | -- | -0.98 | 9.68 | -- | -- | -- | -- |
| 169.79 | 0.61 | 11.2 | -1.28 | 2.73 | -- | -- | -- | -0.98 | 9.68 | -- | -- | -- | -- |
| 466.78 | 1.01 | 11.2 | -0.436 | -- | -1.73 | -- | -- | -0.322 | -- | 25.1 | 710 | -- | -- |
| 162.29 | 0.593 | 11.1 | -- | 2.75 | -1.27 | -- | -- | -0.646 | 9.51 | 20.01 | 2643 | -- | -- |
| 613.03 | 1.16 | 11.2 | -1.3 | -- | -- | -- | -- | -0.976 | -- | -- | -- | -- | -- |
| 212.89 | 0.683 | 11.1 | -- | 2.74 | -- | -- | -- | -0.837 | 9.72 | -- | -- | -- | -- |
| 471.61 | 1.01 | 11.1 | -- | -- | -1.95 | -- | -- | -0.185 | -- | 25.21 | 710 | -- | -- |
| 657.81 | 1.2 | 11.2 | -- | -- | -- | -- | -- | -0.831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 7 | 141.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 22 | 142.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 26 | 142.60 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 44 | 143.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 79 | 143.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 81 | 143.98 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 85 | 144.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 102 | 144.58 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 129 | 145.05 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 130 | 145.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 133 | 145.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 137 | 145.17 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 162 | 145.40 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 180 | 145.61 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 183 | 145.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 202 | 145.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 205 | 145.88 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 207 | 145.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 215 | 145.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 232 | 146.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 239 | 146.12 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 241 | 146.13 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 243 | 146.14 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 250 | 146.16 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 252 | 146.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 310 | 146.38 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 334 | 146.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 336 | 146.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 337 | 146.54 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 8 |
| 411 | 146.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 446 | 147.00 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 13 |
| 481 | 147.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 491 | 147.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 495 | 147.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 499 | 147.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 517 | 147.32 | radiation | 10 | 1440 | < th | dose dependent | sin | 14 | NA |
| 529 | 147.37 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 12 |
| 560 | 147.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 563 | 147.48 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 9 |
| 565 | 147.48 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 574 | 147.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 575 | 147.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 592 | 147.51 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 676 | 147.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 713 | 147.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 726 | 147.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 753 | 147.97 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 840 | 148.16 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 857 | 148.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 873 | 148.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 934 | 148.41 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 17 |