Os11g0484300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mcm2-prov protein.
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Os11g0484300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mcm2-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.08 | 0.673 | 7.84 | -1.46 | 1.71 | 1.3 | -0.0751 | -1.17 | 1.22 | 0.941 | 20.7 | 509 | -- | -- |
| 209.31 | 0.674 | 7.82 | -1.23 | 1.75 | 1.39 | -0.131 | -- | 1.27 | 0.982 | 20.7 | 462 | -- | -- |
| 205.1 | 0.667 | 7.84 | -1.46 | 1.71 | 1.3 | -- | -1.17 | 1.22 | 0.939 | 20.7 | 509 | -- | -- |
| 209.3 | 0.674 | 7.81 | -1.21 | 1.77 | 1.38 | -- | -- | 1.28 | 0.98 | 20.7 | 435 | -- | -- |
| 357.54 | 0.881 | 7.86 | -1.64 | -- | 1.66 | -- | -1.12 | 1.05 | -- | 21.4 | 886 | -- | -- |
| 271.3 | 0.772 | 7.74 | -0.748 | 1.75 | -- | -0.209 | -- | 1.59 | 0.549 | -- | -- | -- | -- |
| 271.49 | 0.772 | 7.74 | -0.74 | 1.75 | -- | -- | -- | 1.59 | 0.543 | -- | -- | -- | -- |
| 362.15 | 0.886 | 7.82 | -1.32 | -- | 1.7 | -- | -- | 1.15 | -- | 21.3 | 881 | -- | -- |
| 244.02 | 0.728 | 7.77 | -- | 1.79 | 1.08 | -- | -- | 1.46 | 0.848 | 20.68 | 391 | -- | -- |
| 463.31 | 1.01 | 7.71 | -0.679 | -- | -- | -- | -- | 1.62 | -- | -- | -- | -- | -- |
| 285.93 | 0.791 | 7.72 | -- | 1.74 | -- | -- | -- | 1.67 | 0.522 | -- | -- | -- | -- |
| 403.52 | 0.936 | 7.76 | -- | -- | 1.25 | -- | -- | 1.36 | -- | 21.9 | 857 | -- | -- |
| 475.48 | 1.02 | 7.69 | -- | -- | -- | -- | -- | 1.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 3 | 205.01 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 5 | 206.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 8 | 206.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 18 |
| 14 | 206.64 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 23 | 206.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 44 | 207.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 57 | 207.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 58 | 207.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 75 | 207.35 | temperature | 20.0 | 720 | > th | dose independent | sin | 15 | NA |
| 111 | 207.60 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 118 | 207.68 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 135 | 207.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 143 | 207.85 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 159 | 207.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 161 | 207.97 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 178 | 208.07 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 194 | 208.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 202 | 208.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 207 | 208.31 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 208 | 208.32 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 213 | 208.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 218 | 208.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 231 | 208.48 | temperature | 20.0 | 720 | < th | dose independent | rect. | 10 | 18 |
| 247 | 208.64 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 255 | 208.69 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 260 | 208.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 262 | 208.75 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 292 | 209.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 293 | 209.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 296 | 209.08 | temperature | 20.0 | 720 | < th | dose independent | sin | 16 | NA |
| 313 | 209.20 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 318 | 209.22 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 322 | 209.27 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 324 | 209.28 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 326 | 209.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 327 | 209.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 328 | 209.29 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 20 |
| 329 | 209.29 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 331 | 209.30 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 341 | 209.32 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 345 | 209.36 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 358 | 209.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 368 | 209.46 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 375 | 209.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 381 | 209.53 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 393 | 209.61 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 404 | 209.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 411 | 209.72 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 449 | 209.91 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 450 | 209.92 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 494 | 210.14 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 497 | 210.14 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 550 | 210.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 617 | 210.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 618 | 210.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 639 | 210.90 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 664 | 211.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 686 | 211.14 | temperature | 25.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 697 | 211.21 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 21 |
| 714 | 211.30 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 728 | 211.34 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 756 | 211.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 803 | 211.61 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 814 | 211.66 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 850 | 211.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 881 | 211.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 904 | 211.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 914 | 212.04 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |