BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0484300 Os11g0484300|AK121422
(961 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0484300 Similar to Mcm2-prov protein 1782 0.0
AK110005 876 0.0
Os05g0476200 Similar to DNA replication licensing factor MC... 352 9e-97
Os02g0797400 MCM family protein 342 6e-94
Os12g0560700 Similar to PROLIFERA protein 330 2e-90
Os05g0235800 MCM protein 6 family protein 325 1e-88
AK110122 292 1e-78
Os06g0218500 MCM family protein 288 2e-77
Os05g0464100 MCM family protein 169 1e-41
Os05g0173700 Similar to DNA replication licensing factor MC... 81 4e-15
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 1782 bits (4616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/961 (91%), Positives = 884/961 (91%)
Query: 1 MDDSENNAPSTPGSPGFSTDRLPPNTTTSRGXXXXXXXXXXXXXXXXXXXXXXXXPNVLP 60
MDDSENNAPSTPGSPGFSTDRLPPNTTTSRG PNVLP
Sbjct: 1 MDDSENNAPSTPGSPGFSTDRLPPNTTTSRGATDPSSYSDDDDDDVVGAEEAEVDPNVLP 60
Query: 61 XXXXXXXXXXXXXXXXLFNDNYLDDYRRMDEQDQYESVGLDDSIEDERNLDEIMXXXXXX 120
LFNDNYLDDYRRMDEQDQYESVGLDDSIEDERNLDEIM
Sbjct: 61 EDDGVVAAEEEEDGEDLFNDNYLDDYRRMDEQDQYESVGLDDSIEDERNLDEIMADRRAA 120
Query: 121 XXXXXXXXVRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRTPRSDDDGD 180
VRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRTPRSDDDGD
Sbjct: 121 EAELDARDVRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRTPRSDDDGD 180
Query: 181 GATPSSPGRSQRGMYSGGDVPMTXXXXXXXXXXXXXXXXXMNMYRVQGTLREWVTRDEVR 240
GATPSSPGRSQRGMYSGGDVPMT MNMYRVQGTLREWVTRDEVR
Sbjct: 181 GATPSSPGRSQRGMYSGGDVPMTDQTDDDPYEDEFDEEDEMNMYRVQGTLREWVTRDEVR 240
Query: 241 RFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLA 300
RFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLA
Sbjct: 241 RFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLA 300
Query: 301 DAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIG 360
DAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIG
Sbjct: 301 DAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIG 360
Query: 361 GVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTI 420
GVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTI
Sbjct: 361 GVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTI 420
Query: 421 YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK 480
YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK
Sbjct: 421 YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK 480
Query: 481 NGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHE 540
NGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHE
Sbjct: 481 NGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHE 540
Query: 541 DIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGK 600
DIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGK
Sbjct: 541 DIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGK 600
Query: 601 GASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSI 660
GASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSI
Sbjct: 601 GASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSI 660
Query: 661 SISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDP 720
SISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDP
Sbjct: 661 SISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDP 720
Query: 721 FTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYA 780
FTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYA
Sbjct: 721 FTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYA 780
Query: 781 KLNVFPKIHDADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVS 840
KLNVFPKIHDADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVS
Sbjct: 781 KLNVFPKIHDADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVS 840
Query: 841 QEDVDMAIRVLLDSFISTQKFGVQKALQKNFRKYMTYKKDYNEXXXXXXRTLVKDVLHFE 900
QEDVDMAIRVLLDSFISTQKFGVQKALQKNFRKYMTYKKDYNE RTLVKDVLHFE
Sbjct: 841 QEDVDMAIRVLLDSFISTQKFGVQKALQKNFRKYMTYKKDYNELLLLLLRTLVKDVLHFE 900
Query: 901 EIVSGPTTRLTHIEVKVEDLKNKAQEYEIYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA 960
EIVSGPTTRLTHIEVKVEDLKNKAQEYEIYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA
Sbjct: 901 EIVSGPTTRLTHIEVKVEDLKNKAQEYEIYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA 960
Query: 961 A 961
A
Sbjct: 961 A 961
>AK110005
Length = 954
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/724 (58%), Positives = 545/724 (75%), Gaps = 15/724 (2%)
Query: 229 TLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQF 288
++ WV ++VRR I ++F+ FL+TYV+ E G Y + I + N SLEI +
Sbjct: 213 SIASWVATEDVRRAIVREFRNFLVTYVD---ENGVSVYGQRIKTLGETNAESLEISFLHL 269
Query: 289 IYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNI 348
+ +A +LA++P S+L + +EVA +V+ + +Y IH +++VRI +LP +R++
Sbjct: 270 VDSKAILAYFLANSPASMLPIFDEVAFDVIMLYYPSYDRIHSEVHVRIADLPTSSTLRDL 329
Query: 349 RQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKVGSCPECQS 408
RQ HLN+++R+ GVVTRRSGVFPQL+ VKFDC KCG VLGPF+Q++ E+K+ C C+
Sbjct: 330 RQGHLNSLVRVSGVVTRRSGVFPQLKYVKFDCLKCGAVLGPFWQDANQEIKISYCSNCEQ 389
Query: 409 KGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGI 468
+GPF IN EQT+YRNYQK+TLQESPG VP GRLPR++EVILL DLID A+PGEE+E+TG+
Sbjct: 390 RGPFRINSEQTVYRNYQKMTLQESPGSVPPGRLPRHREVILLWDLIDSAKPGEEVEITGV 449
Query: 469 YTNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERI 528
Y NNFD SLNTKNGFPVFATV+EAN++AK+ D FSA++LT+ED+ +I+ LAKD RIG+RI
Sbjct: 450 YRNNFDASLNTKNGFPVFATVLEANHIAKRDDAFSAFRLTEEDERQIKALAKDERIGKRI 509
Query: 529 VKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVE 588
+KSIAPSIYGHEDIKTAIAL++FGG K++ GKHR+RGDINVLLLGDPGTAKSQFLKYVE
Sbjct: 510 IKSIAPSIYGHEDIKTAIALSLFGGVSKDIGGKHRIRGDINVLLLGDPGTAKSQFLKYVE 569
Query: 589 KTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 648
KT RAV+TTG+GASAVGLTA+V KDPVTREWTLEGGALVLAD+G+CLIDEFDKMND DR
Sbjct: 570 KTASRAVFTTGQGASAVGLTASVRKDPVTREWTLEGGALVLADKGVCLIDEFDKMNDADR 629
Query: 649 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 708
SIHEAMEQQ ISISKAGIVT+LQARC+++AAANPI GRY+ + F QNVELT+PI+SRF
Sbjct: 630 TSIHEAMEQQQISISKAGIVTTLQARCAIVAAANPIRGRYNPTIPFNQNVELTEPILSRF 689
Query: 709 DVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDIL 768
D LCVVKD VDP D+MLARFVV SH RS PK D E D A D DIL
Sbjct: 690 DALCVVKDTVDPVKDDMLARFVVGSHLRSHPK---------FDDETDEQLVATSLDADIL 740
Query: 769 SQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSE 828
QD+LKKYI YA+ +V P ++ D D+IS +YA+LRRES PI VRH+ES+IRM+E
Sbjct: 741 PQDLLKKYIMYARDHVRPSLNALDQDRISRLYADLRRESISTGSFPITVRHLESMIRMAE 800
Query: 829 AHARMHLRSYVSQEDVDMAIRVLLDSFISTQKFGVQKALQKNFRKYMTYKKDYNEXXXXX 888
A A+MHLR YV +D+D+AIR ++SF+S QK V+K L++ FRKY+ +D++E
Sbjct: 801 ASAKMHLRDYVRTDDIDVAIRATVESFVSAQKMSVKKTLERGFRKYLHQSRDHDELLSFL 860
Query: 889 XRTLVKDVLHFEEIVSGP---TTRLTHIEVKVEDLKNKAQEYEIYDLRPFFSSAHFRDNN 945
++VKD + F ++ +G R T + V +L+ +A+E +++D+RP+ S F N
Sbjct: 861 LGSIVKDRMRFVQLSAGARRGAQRDTVVTVPAAELETRAKEVDVFDIRPYLGSKLFHANG 920
Query: 946 FVLD 949
+ +
Sbjct: 921 YTFN 924
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 352 bits (902), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 227/619 (36%), Positives = 342/619 (55%), Gaps = 31/619 (5%)
Query: 262 GEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDL 321
G+ Y++ + +MV + L I ++A + +P ++ + V +L
Sbjct: 24 GKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRSPAEYMQPASDAVTEVARNL 83
Query: 322 HKNYRNIHQKIYVRITNLPVYDQI--RNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFD 379
+ Q++ V + + ++ R++ + TM+ + G+VT+ S V P++ +
Sbjct: 84 DPKFLKEGQRVLVGFSGPFGFHRVTPRDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHY 143
Query: 380 CSKCGTVLGPFFQN--SYTEVKVGSCPECQSKGPFTINVEQTI--YRNYQKLTLQESPGI 435
C G L +++ S+ + GS + + + E + Y+++Q L++QE P
Sbjct: 144 CPATGGTLSREYRDITSFVGLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPEN 203
Query: 436 VPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYV 495
G+LPR ++I+ +DL+D +PG+ + + G+Y S + +G VF TV+ AN V
Sbjct: 204 SAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKALPGKSKGSVSG--VFRTVLIANNV 261
Query: 496 AKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQE 555
+ +A T ED ++++++ + + S+APSIYGH IK A+ L M GG E
Sbjct: 262 SLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVE 321
Query: 556 KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDP 615
KN+K LRGDIN++++GDP AKSQ L+ V A+ TTG+G+S VGLTAAV D
Sbjct: 322 KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQ 381
Query: 616 VTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 675
T E LE GA+VLADRG+ IDEFDKMNDQDRV+IHE MEQQ+++I+KAGI SL ARC
Sbjct: 382 ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 441
Query: 676 SVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHA 735
SVIAAANPI G YD S T T+N+ L D ++SRFD+L +V D +DP D ++ V H
Sbjct: 442 SVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHR 501
Query: 736 R-SQPKGANLEDRVPTDVEDDPLAAA------------------RQADPDILSQDMLKKY 776
+ GA D+ EDD A +++ D L+ LKKY
Sbjct: 502 YCTDDGGARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDRRRGKKSKQDRLTVKFLKKY 561
Query: 777 ITYAKLNVFPKIHDADLDKISHVYAELR----RESSHGQGVPIAVRHIESIIRMSEAHAR 832
I YAK + P++ D D I+ YAELR S G +PI R +E+IIR+S AHA+
Sbjct: 562 IHYAKNLIQPRLTDEASDHIATSYAELRDGGANAKSGGGTLPITARTLETIIRLSTAHAK 621
Query: 833 MHLRSYVSQEDVDMAIRVL 851
M LR V + DV+ A++VL
Sbjct: 622 MKLRHEVLKTDVEAALQVL 640
>Os02g0797400 MCM family protein
Length = 729
Score = 342 bits (878), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 227/657 (34%), Positives = 341/657 (51%), Gaps = 54/657 (8%)
Query: 237 DEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIA 296
D R +KFKEFL + P G+F Y E ++ N+ + + + ++
Sbjct: 29 DLTRHSALRKFKEFLRGFTGP---TGDFPY----RESLVHNRDHVTVAIEDLDAFDAELS 81
Query: 297 IWLADAPQSVLEVMEEVAKNVVFDLHKNYRN--------IHQKIYVRITNLPVYDQIRNI 348
+ +P L + E A V+ L + + +++ +R+I
Sbjct: 82 DKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSI 141
Query: 349 RQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLG-PFFQNSYTEVKVGSCPECQ 407
+++ +++I G+ S V + V C C +V P + SC
Sbjct: 142 GADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVP 201
Query: 408 SKG-------PFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPG 460
G P+ +++ Y + Q L LQE+P VP G LPR + + L+ PG
Sbjct: 202 QPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPG 261
Query: 461 EEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFS--AYKLTDEDKAEIEKL 518
+ V GIY+ + S N K V + + + +D S T +++ E ++
Sbjct: 262 TRLTVIGIYSV-YQASANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEF 320
Query: 519 AKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGT 578
A+ P +I I PSIYGH D+K AIA +FGG +K + RLRGDI+VLLLGDP T
Sbjct: 321 AQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPST 380
Query: 579 AKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLID 638
AKSQFLK+VEKT AVYT+GKG+SA GLTA+V +D +RE+ LEGGA+VLAD G+ ID
Sbjct: 381 AKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCID 440
Query: 639 EFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNV 698
EFDKM +DRV+IHEAMEQQ+ISI+KAGI T L +R SV+AAANPI GRYD KT N+
Sbjct: 441 EFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNI 500
Query: 699 ELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLA 758
+L I+SRFD++ +VKD+ D+ +A ++ HA A
Sbjct: 501 DLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVHASG--------------------A 540
Query: 759 AARQADPDIL-SQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELR---RESSHGQG-- 812
AA + D ++ LK+YI Y ++ P++ + + + + Y E+R R+ +H G
Sbjct: 541 AASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRA 600
Query: 813 --VPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFISTQKFGVQKAL 867
+PI VR +E+IIR+SE+ A+M L S + E V+ A R+ S + + G+ + L
Sbjct: 601 AAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHL 657
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 330 bits (847), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/540 (36%), Positives = 301/540 (55%), Gaps = 42/540 (7%)
Query: 323 KNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSK 382
+ + ++ K + ++T L IR ++ ++ +++I G+VTR S V P +Q + C +
Sbjct: 132 RRFFEVYIKAFSKVTPL----TIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEE 187
Query: 383 CG---------TVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESP 433
CG V P F E C ++KG + + + + +Q++ LQE
Sbjct: 188 CGFEIYQEVTARVFMPLF-----ECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELA 242
Query: 434 GIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEAN 493
VP G +PR V L +L PG+ +E++GI+ V T +E+
Sbjct: 243 EHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVADTYLESM 302
Query: 494 YVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGG 553
+ + + Y+L +++ +I++LA+D I ++ +S+AP I+GHED+K A+ L + G
Sbjct: 303 SITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGA 362
Query: 554 QEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHK 613
+ + ++RGD+++ L+GDPG AKSQ LK++ R VYTTG+G+S VGLTAAV K
Sbjct: 363 PHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQK 422
Query: 614 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 673
DPVT E+ LEGGALVLAD GIC IDEFDKM + DR +IHE MEQQ++SI+KAGI TSL A
Sbjct: 423 DPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNA 482
Query: 674 RCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDS 733
R +V+AAANP GRYD +T +N+ L ++SRFD+L ++ D D TD +AR VV
Sbjct: 483 RTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHV 542
Query: 734 HARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYAKLNVFPKIHDADL 793
H NLE P +P + L+ YI+ A+ V P +
Sbjct: 543 H-------QNLE---------SPALGFTPLEPPV-----LRAYISTAR-RVVPSVPRELE 580
Query: 794 DKISHVYAELRRE--SSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVL 851
+ I+ Y+ +R+E S+ +R + SI+R+S A AR+ V+Q DVD A+R++
Sbjct: 581 EYIATAYSSIRQEEAKSNAPHSYTTIRTLLSILRISIALARLRFSETVAQSDVDEALRLM 640
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 325 bits (832), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 210/580 (36%), Positives = 309/580 (53%), Gaps = 73/580 (12%)
Query: 329 HQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLG 388
++ I + N+P+ ++R + + + + GVVTR S V P+L Q F C CG V+
Sbjct: 108 NKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVK 167
Query: 389 PFFQN-SYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEV 447
Q YTE + CQ++ + + +++ + ++Q++ +QE+ +PAG LPR +V
Sbjct: 168 NVEQQFKYTEPIICVNATCQNRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDV 227
Query: 448 ILLNDLIDCARPGEEIEVTGIYTNNFDLSLNT---------------KNGFPV------- 485
IL +++++ AR G+ + TG D+ T KNG V
Sbjct: 228 ILRHEIVEKARAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGL 287
Query: 486 -----------FATVVEANYVAKKQDLFSAY------------KLTDEDKAEIEKLAKDP 522
A V + VA + K T+E++ E+ ++ P
Sbjct: 288 KSLGVRDLSYRLAFVANSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMRNVP 347
Query: 523 RIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQ 582
+IV SI P+++GH++IK AI L + GG K LRGDINV ++GDP AKSQ
Sbjct: 348 DFFNKIVDSICPTVFGHQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQ 407
Query: 583 FLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 642
FLKY R+VYT+GK +SA GLTA V K+P T E+ +E GAL+LAD GIC IDEFDK
Sbjct: 408 FLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDK 467
Query: 643 MNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTD 702
M+ +D+V+IHEAMEQQ+ISI+KAGI +L AR S++AAANP GGRYD SK NV L
Sbjct: 468 MDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPP 527
Query: 703 PIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQ 762
I+SRFD++ ++ D D TD +A +V H + ++ LA A
Sbjct: 528 AILSRFDLVYIMIDEPDENTDYHIAHHIVRVHQK----------------REEALAPA-- 569
Query: 763 ADPDILSQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELRR-ESSHGQGVP--IAVRH 819
S LK+YI +AK ++ P++ + Y LRR +S+ G V + VR
Sbjct: 570 -----FSTAELKRYIAFAK-SLKPQLSSEAKKVLVESYVTLRRGDSTPGTRVAYRMTVRQ 623
Query: 820 IESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFISTQ 859
+E++IR+SEA AR HL V V MA+++L S IS +
Sbjct: 624 LEALIRLSEAIARSHLERVVLPAHVRMAVKLLKTSIISVE 663
>AK110122
Length = 568
Score = 292 bits (747), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 201/539 (37%), Positives = 295/539 (54%), Gaps = 49/539 (9%)
Query: 234 VTRDEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHP 293
V +D++ R + F EFL + EY + M+ + L I+ +
Sbjct: 15 VFQDDLLRGRQRVFSEFL----------SKDEYQDAVRRMLRMDARRLIINIDDLRSYNR 64
Query: 294 NIAIWLADAPQ-------SVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIR 346
A L + P + L V E+A N + D + +N I +R + + R
Sbjct: 65 EFATGLLNEPNEFLPAFDAALHVSVELAHNAIKD---DIKNKQYYIGLRGSFGDHHVNPR 121
Query: 347 NIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKV-GSCP- 404
+R IHL M+ + G+VTR S V P++ + C F Q Y + + G+ P
Sbjct: 122 TLRSIHLGKMMSLEGIVTRCSLVRPKILKSVHYCENTAK----FHQREYRDATMYGTLPP 177
Query: 405 -------ECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCA 457
E +S T + +R++Q +++QE P P G+LPR +V++ +D++D
Sbjct: 178 SSTVYPTEDESGNRLTTEYGHSQFRDHQMISIQEMPERAPPGQLPRSIDVVMDDDMVDRC 237
Query: 458 RPGEEIEVTGIYTNNFDLSLNTKNG---FPVFATVVEANYV----AKKQDLFSAYKLTDE 510
+PG+ I++ G+Y SL + G F T++ N + +K + +TD
Sbjct: 238 KPGDRIQLVGMYR-----SLGNRVGQSSSSTFRTLMIGNNINLLSSKAGGGIAQAHITDT 292
Query: 511 DKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINV 570
D I K+AK + + +S+APSIYGHE IK A+ L + GG+EKN+ +RGDIN+
Sbjct: 293 DIRNINKIAKRKNVFNLLSQSLAPSIYGHEYIKKAVLL-LLGGEEKNLPNGTHIRGDINI 351
Query: 571 LLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA 630
L++GDP TAKSQ L++V T A+ TTG+G+S VGLTAAV D T E LE GA+VLA
Sbjct: 352 LMVGDPSTAKSQMLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERRLEAGAMVLA 411
Query: 631 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDS 690
DRG+ IDEFDKM+D DRV+I+E MEQQ+++I+KAGI TSL ARCSV+AAANPI G+YD
Sbjct: 412 DRGVICIDEFDKMSDVDRVAIYEVMEQQTVTIAKAGIHTSLNARCSVVAAANPIYGQYDV 471
Query: 691 SKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVP 749
K +N+ L D ++SRFD+L VV D VD D M++ V+ H QP LE+ P
Sbjct: 472 HKDPHKNIALPDSLLSRFDLLFVVTDDVDEQHDRMISEHVLRMHRYLQP---GLEEGTP 527
>Os06g0218500 MCM family protein
Length = 674
Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 197/623 (31%), Positives = 324/623 (52%), Gaps = 59/623 (9%)
Query: 281 LEIDYKQFIYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDLHKNYRNIHQK--------- 331
L ID+ + + P +A L D P+ VLE+ + A+ + R ++
Sbjct: 48 LVIDFAELLEFDPEVAHQLYDYPKDVLELFDAAAQRALDKFDAAARRADKRKAGDETMEK 107
Query: 332 --IYVRITN------LP-VYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSK 382
++VR+ P I +R H T++ + G V R GV + K+ C K
Sbjct: 108 KFVHVRVNTSGSALECPEASPSIGKVRVKHRGTLLTLKGTVIRSGGVKMIEGERKYQCRK 167
Query: 383 CGT--VLGPFFQNSYTEVKVGSCPECQSKGPFTIN---VEQTI-YRNYQKLTLQESPGIV 436
C + P + SC +KG N +E +I +YQ++ +QE+ ++
Sbjct: 168 CKCRFTVHPELEAGNRITLPASCKSKSAKGCGGANFQLIEDSITCHDYQEIKIQENIQLL 227
Query: 437 PAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVA 496
G +PR +IL++DL+D + G+++ VTG + + S + K+ ++ AN+V
Sbjct: 228 GVGSIPRSMPIILMDDLVDIVKAGDDVVVTGRLSAKW--SPDIKDVRSNLDPMLIANFVR 285
Query: 497 KKQDLFSAYKLTDEDKAEIEKLAKDPRIG-----ERIVKSIAPSIYGHEDIKTAIALAMF 551
+ +L S + E + E+ R I+K I P IYG +K A+AL +
Sbjct: 286 RTNELKSDLDIPVEIINKFEEFWAASRATPLKGRNSILKGICPQIYGLFTVKLAVALTLI 345
Query: 552 GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAV 611
GG + ++RG+ ++LL+GDPGT KSQFLK+ K +R+V TTG G+++ GLT
Sbjct: 346 GGVQHVDASGTKVRGEPHMLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 405
Query: 612 HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 671
KD EW LE GALVLAD G+C IDEFD M + DR +IHEAMEQQ+ISI+KAG+VT+L
Sbjct: 406 VKD--GGEWMLEAGALVLADGGLCCIDEFDSMREHDRTTIHEAMEQQTISIAKAGLVTTL 463
Query: 672 QARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVV 731
R +V A NP G+YD +++ + N L+ P++SRFD++ V+ D + D+ +V
Sbjct: 464 NTRTTVFGATNP-KGQYDPNESLSVNTTLSGPLLSRFDIVLVLLDTKNKKWDK-----IV 517
Query: 732 DSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDIL-SQDMLKKYITYAKLNVFPKIHD 790
SH ++ N E++ + +DP+++ + ML++YI Y K + F +
Sbjct: 518 SSHILAE----NTEEK-----------KGKTSDPEVMWTLSMLRRYIHYVKQH-FKPVLT 561
Query: 791 ADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRV 850
+ +++ Y + +R+S VR +ES+IR+++AHAR+ R+ V++ D AI +
Sbjct: 562 KEAERVISSYYQRQRQSGTRNAARTTVRMLESLIRLAQAHARLMFRNDVTKLDAIAAI-L 620
Query: 851 LLDSFISTQKF--GVQKALQKNF 871
++S ++T AL NF
Sbjct: 621 CIESSMTTSAIVDTAGNALHSNF 643
>Os05g0464100 MCM family protein
Length = 481
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 192/402 (47%), Gaps = 42/402 (10%)
Query: 280 SLEIDYKQFIYIHPNIAIWLADA----PQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVR 335
SL +D++Q + W+ +A P+ L M +V KI +R
Sbjct: 75 SLPVDFQQLSNL-----TWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDINKINIR 129
Query: 336 ITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSY 395
+ N ++N++ ++ ++ + G V + S V P + Q+ F C KC T F +
Sbjct: 130 LYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVFCDGK 189
Query: 396 TEVKVGSCP--ECQSKGPFTINVEQTIYRNYQKLTLQE--SPGIVPAGRLPRYKEVILLN 451
V SC C+S+ F ++QK+ +QE S GR+PR E L
Sbjct: 190 FSPPV-SCSIQGCKSR-TFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRTIECELTE 247
Query: 452 DLIDCARPGEEIEVTGIY--TNNFDLSLNTKNGFP------VFATVVEANYVAKKQ---- 499
DL+DC PGE + VTGI NN+ ++ G ++ +EA V +
Sbjct: 248 DLVDCCIPGETVTVTGIVKVLNNY---MDVGGGKSKSRNQGLYYLYLEAISVRNSKVHAA 304
Query: 500 --------DLFSAYKLTDEDKAEIEKLAKD--PRIGERIVKSIAPSIYGHEDIKTAIALA 549
F T++D I K ++ + +I+ S PSIYGHE +K I LA
Sbjct: 305 SGNSDAASGSFGFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAGITLA 364
Query: 550 MFGGQEKNV--KGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGL 607
+FGG +K+ + K +RGDI+ +++GDPG KSQ L+ R +Y G + GL
Sbjct: 365 LFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGL 424
Query: 608 TAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRV 649
T AV KD ++ ++ E GA+VLADRGIC IDEFDKM+ + +V
Sbjct: 425 TVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 576 PGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGG----ALVLAD 631
P A SQ + V A+ TTG+ +S VGL AAV D T E GG A+VLAD
Sbjct: 2 PSIANSQLRRAVMTI---ALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
Query: 632 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 674
R IDEFDKMNDQDRV+IH +E ++++I AGI SL AR
Sbjct: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,665,346
Number of extensions: 1283540
Number of successful extensions: 3749
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 3717
Number of HSP's successfully gapped: 11
Length of query: 961
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 851
Effective length of database: 11,292,261
Effective search space: 9609714111
Effective search space used: 9609714111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)