Os05g0173700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).
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Os05g0173700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.46 | 0.237 | 9.65 | -1.29 | 0.0457 | -0.609 | 0.427 | 0.346 | -0.0693 | 0.15 | 22.47 | 617 | -- | -- |
| 25.57 | 0.236 | 9.64 | -1.25 | 0.0439 | -0.662 | 0.382 | -- | -0.064 | 0.638 | 22.6 | 619 | -- | -- |
| 26.08 | 0.238 | 9.65 | -1.28 | 0.0641 | -0.656 | -- | 0.18 | -0.074 | 0.983 | 22.36 | 477 | -- | -- |
| 26.1 | 0.238 | 9.64 | -1.29 | 0.0789 | -0.703 | -- | -- | -0.0615 | 1.25 | 22.3 | 418 | -- | -- |
| 26.3 | 0.239 | 9.64 | -1.28 | -- | -0.651 | -- | 0.108 | -0.0711 | -- | 22.63 | 625 | -- | -- |
| 30.77 | 0.26 | 9.62 | -1.09 | 0.0929 | -- | 0.341 | -- | 0.03 | 23.6 | -- | -- | -- | -- |
| 31.25 | 0.262 | 9.62 | -1.11 | 0.0931 | -- | -- | -- | 0.029 | 22.9 | -- | -- | -- | -- |
| 26.31 | 0.239 | 9.64 | -1.27 | -- | -0.668 | -- | -- | -0.068 | -- | 22.65 | 632 | -- | -- |
| 63.16 | 0.372 | 9.6 | -- | 0.104 | -0.169 | -- | -- | 0.137 | 22.6 | 22.3 | 418 | -- | -- |
| 31.79 | 0.263 | 9.62 | -1.1 | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
| 63.49 | 0.373 | 9.59 | -- | 0.0862 | -- | -- | -- | 0.152 | 22 | -- | -- | -- | -- |
| 63.72 | 0.372 | 9.6 | -- | -- | -0.253 | -- | -- | 0.15 | -- | 16.2 | 469 | -- | -- |
| 63.94 | 0.373 | 9.59 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.44 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 4 | 25.51 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 7 | 25.51 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 9 | 25.52 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 37 | 25.55 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 76 | 25.64 | temperature | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 107 | 25.71 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 139 | 25.79 | temperature | 20.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 140 | 25.79 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 152 | 25.82 | temperature | 20.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 165 | 25.85 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 166 | 25.85 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 204 | 25.90 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 19 |
| 219 | 25.93 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 235 | 25.96 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 348 | 26.09 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 405 | 26.13 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 417 | 26.14 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 435 | 26.15 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 436 | 26.16 | temperature | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 444 | 26.16 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 459 | 26.16 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 510 | 26.19 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 13 |
| 591 | 26.23 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 613 | 26.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 716 | 26.29 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 735 | 26.30 | temperature | 20.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 828 | 26.34 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 830 | 26.34 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 4 |