BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0173700 Os05g0173700|AK063470
(101 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0173700 Similar to DNA replication licensing factor MC... 205 5e-54
Os05g0476200 Similar to DNA replication licensing factor MC... 139 7e-34
AK110122 119 4e-28
Os12g0560700 Similar to PROLIFERA protein 87 3e-18
Os05g0235800 MCM protein 6 family protein 81 2e-16
Os11g0484300 Similar to Mcm2-prov protein 80 3e-16
Os02g0797400 MCM family protein 77 3e-15
AK110005 71 2e-13
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 205 bits (522), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 YPSIANSQLRRAVMTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLADRC 60
YPSIANSQLRRAVMTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLADRC
Sbjct: 1 YPSIANSQLRRAVMTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLADRC 60
Query: 61 AVCIDEFDKMNDQDRVAIHAVLEHKTVTIAGIHASLNARFF 101
AVCIDEFDKMNDQDRVAIHAVLEHKTVTIAGIHASLNARFF
Sbjct: 61 AVCIDEFDKMNDQDRVAIHAVLEHKTVTIAGIHASLNARFF 101
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 84/103 (81%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS+A SQL RAVM IA +STTGR SSGVGL AAVTSD+ETGERR L AGA+VLAD
Sbjct: 342 PSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERR----LEAGAMVLAD 397
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
R VCIDEFDKMNDQDRVAIH V+E +TVTI AGIHASLNAR
Sbjct: 398 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 440
>AK110122
Length = 568
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 80/103 (77%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMT---IALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS A SQ+ R V+ +A++TTGR SSGVGL AAVT+D+ETGERR L AGA+VLAD
Sbjct: 357 PSTAKSQMLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERR----LEAGAMVLAD 412
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
R +CIDEFDKM+D DRVAI+ V+E +TVTI AGIH SLNAR
Sbjct: 413 RGVICIDEFDKMSDVDRVAIYEVMEQQTVTIAKAGIHTSLNAR 455
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P +A SQL + ++ +A + TTGR SSGVGL AAV D T E GG A+VLAD
Sbjct: 385 PGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGG----ALVLAD 440
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
IDEFDKM + DR AIH V+E +TV+I AGI SLNAR
Sbjct: 441 MGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNAR 483
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRR---AVMTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS A SQ + ++ ++ T+G+ SS GL A V + ETGE + AGA++LAD
Sbjct: 401 PSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGE----FCIEAGALMLAD 456
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
CIDEFDKM+ +D+VAIH +E +T++I AGI A+LNAR
Sbjct: 457 NGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNAR 499
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTI---ALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P A SQ + V A+ TTG+ +S VGL AAV D T E GG A+VLAD
Sbjct: 576 PGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGG----ALVLAD 631
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
R IDEFDKMNDQDRV+IH +E ++++I AGI SL AR
Sbjct: 632 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 674
>Os02g0797400 MCM family protein
Length = 729
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAV---MTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS A SQ + V IA+ T+G+ SS GL A+V D + E GG A+VLAD
Sbjct: 378 PSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG----AMVLAD 433
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
VCIDEFDKM +DRVAIH +E +T++I AGI LN+R
Sbjct: 434 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 476
>AK110005
Length = 954
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P A SQ + V A + TTG+ +S VGL A+V D T E L GA+VLAD
Sbjct: 557 PGTAKSQFLKYVEKTASRAVFTTGQGASAVGLTASVRKDPVTRE----WTLEGGALVLAD 612
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
+ IDEFDKMND DR +IH +E + ++I AGI +L AR
Sbjct: 613 KGVCLIDEFDKMNDADRTSIHEAMEQQQISISKAGIVTTLQAR 655
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,036,260
Number of extensions: 114433
Number of successful extensions: 387
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)