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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0560700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PROLIFERA protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0364) R2 : 0.0883
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.509 (0.0766) R2dN8 : 0.114 R2N8 : 0.0883
σ : 0.685
deviance : 215.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.36 0.665 2.98 -0.414 0.171 0.386 -0.481 -1.71 0.52 5.93 10 1425 -- --
203.74 0.665 2.96 -0.431 0.0494 0.561 -0.221 -- 0.561 6.13 9.94 1804 -- --
200.79 0.66 2.98 -0.426 0.166 0.395 -- -1.74 0.52 5.54 10 1414 -- --
203.79 0.665 2.96 -0.505 0.022 0.571 -- -- 0.529 6.08 9.993 1841 -- --
200.29 0.659 2.98 -0.428 -- 0.42 -- -1.75 0.492 -- 9.999 2018 -- --
208.95 0.678 2.97 -0.411 0.172 -- -0.498 -- 0.458 5.92 -- -- -- --
209.31 0.678 2.98 -0.417 0.18 -- -- -- 0.459 4.57 -- -- -- --
203.82 0.665 2.96 -0.505 -- 0.583 -- -- 0.526 -- 9.999 1843 -- --
209.74 0.675 2.95 -- 0.0873 0.405 -- -- 0.579 5.83 13.4 1737 -- --
211.04 0.679 2.98 -0.41 -- -- -- -- 0.463 -- -- -- -- --
213.89 0.684 2.96 -- 0.173 -- -- -- 0.505 4.63 -- -- -- --
209.91 0.675 2.95 -- -- 0.48 -- -- 0.603 -- 11.74 1804 -- --
215.47 0.685 2.97 -- -- -- -- -- 0.509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.12 wind 7.0 10 > th dose dependent rect. 12 1
3 188.72 wind 9.0 270 > th dose dependent rect. 1 9
6 189.47 wind 9.0 270 > th dose dependent rect. 9 1
21 192.27 wind 7.0 270 > th dose independent rect. 7 1
26 193.44 wind 7.0 10 > th dose independent rect. 12 1
34 195.17 radiation 10.0 270 < th dose independent rect. 8 1
35 195.22 wind 9.0 270 > th dose independent rect. 9 1
45 195.46 wind 7.0 720 > th dose independent rect. 24 1
47 195.46 wind 7.0 720 > th dose dependent rect. 24 1
118 195.92 wind 5.0 720 < th dose independent rect. 3 2
120 195.93 temperature 20.0 30 > th dose dependent rect. 16 11
131 196.18 wind 5.0 720 < th dose independent rect. 23 7
149 196.42 wind 3.0 720 > th dose independent rect. 5 1
167 196.64 temperature 20.0 30 > th dose dependent rect. 21 6
196 197.18 temperature 25.0 270 > th dose independent rect. 14 13
205 197.30 temperature 25.0 270 < th dose independent sin 15 NA
211 197.36 wind 3.0 720 > th dose dependent rect. 5 1
215 197.40 temperature 20.0 270 > th dose dependent sin 14 NA
218 197.47 temperature 25.0 270 > th dose independent sin 15 NA
220 197.51 radiation 10.0 270 < th dose dependent rect. 7 2
240 197.81 temperature 25.0 270 < th dose independent rect. 17 11
244 197.85 temperature 25.0 270 > th dose independent rect. 22 2
247 197.87 wind 5.0 720 < th dose independent rect. 1 5
252 197.94 radiation 20.0 14400 < th dose independent rect. 17 5
255 198.00 temperature 25.0 270 < th dose independent rect. 15 12
264 198.05 temperature 25.0 270 < th dose independent rect. 13 14
270 198.10 precipitation 0.1 720 > th dose independent rect. 3 1
273 198.12 temperature 25.0 720 > th dose dependent rect. 16 1
277 198.13 precipitation 0.1 720 > th dose dependent rect. 3 1
281 198.15 temperature 20.0 720 > th dose dependent rect. 15 8
283 198.16 wind 5.0 720 < th dose independent rect. 1 7
290 198.21 radiation 20.0 14400 < th dose independent rect. 17 7
296 198.25 wind 5.0 1440 < th dose independent rect. 22 1
301 198.28 radiation 20.0 14400 < th dose independent rect. 17 1
310 198.31 wind 5.0 1440 > th dose independent rect. 22 1
351 198.59 humidity 50.0 43200 > th dose independent rect. 22 11
355 198.61 radiation 20.0 4320 < th dose independent rect. 17 11
363 198.65 humidity 70.0 14400 < th dose dependent rect. 19 1
369 198.66 temperature 30.0 270 < th dose dependent rect. 17 12
401 198.82 humidity 60.0 14400 < th dose independent rect. 19 1
407 198.83 humidity 60.0 14400 > th dose independent rect. 19 1
420 198.87 temperature 30.0 270 < th dose dependent sin 14 NA
425 198.89 temperature 25.0 270 > th dose independent rect. 20 6
428 198.90 humidity 50.0 43200 > th dose independent rect. 8 1
430 198.90 wind 7.0 43200 > th dose dependent rect. 18 2
438 198.93 radiation 20.0 4320 < th dose independent rect. 17 9
442 198.93 temperature 25.0 270 > th dose dependent rect. 22 2
449 198.96 humidity 50.0 43200 > th dose independent rect. 3 6
494 199.10 radiation 20.0 1440 < th dose independent rect. 12 1
501 199.12 wind 9.0 43200 < th dose independent rect. 18 2
502 199.12 temperature 30.0 270 < th dose dependent rect. 12 16
503 199.13 wind 3.0 43200 < th dose independent rect. 12 1
520 199.17 temperature 10.0 720 > th dose dependent rect. 15 8
528 199.20 atmosphere 1010.0 14400 > th dose independent rect. 22 2
530 199.20 radiation 10.0 90 < th dose dependent rect. 10 1
538 199.21 radiation 40.0 4320 < th dose independent rect. 15 17
569 199.28 wind 5.0 43200 < th dose dependent rect. 12 2
573 199.29 radiation 10.0 1440 < th dose independent rect. 17 22
578 199.31 radiation 10.0 90 < th dose independent rect. 10 1
589 199.33 wind 9.0 43200 > th dose independent rect. 18 2
597 199.35 temperature 25.0 720 > th dose dependent rect. 15 5
618 199.39 temperature 20.0 720 > th dose dependent rect. 11 14
623 199.41 radiation 40.0 14400 < th dose independent rect. 15 7
635 199.43 wind 7.0 720 < th dose dependent rect. 3 2
638 199.44 temperature 25.0 720 < th dose independent rect. 10 14
655 199.45 radiation 10.0 1440 < th dose independent rect. 12 21
657 199.45 temperature 20.0 270 > th dose dependent rect. 18 9
660 199.45 temperature 20.0 30 > th dose dependent rect. 16 15
668 199.48 humidity 50.0 43200 < th dose independent rect. 3 6
673 199.48 radiation 40.0 14400 < th dose independent rect. 15 9
684 199.50 atmosphere 1010.0 4320 < th dose independent rect. 3 2
690 199.51 atmosphere 1010.0 4320 > th dose independent rect. 3 2
694 199.51 temperature 20.0 30 > th dose independent rect. 16 11
705 199.53 radiation 40.0 14400 < th dose independent rect. 15 2
724 199.55 atmosphere 1010.0 14400 < th dose independent rect. 23 1
746 199.57 humidity 50.0 43200 > th dose independent rect. 18 15
790 199.63 atmosphere 1010.0 14400 < th dose independent rect. 22 3
805 199.65 temperature 25.0 720 > th dose independent rect. 15 2
832 199.68 wind 9.0 43200 > th dose dependent rect. 22 1
833 199.68 humidity 90.0 43200 > th dose dependent rect. 8 1
846 199.69 radiation 1.0 14400 < th dose dependent rect. 21 9
854 199.70 atmosphere 1010.0 14400 > th dose dependent rect. 22 1
855 199.70 radiation 1.0 14400 < th dose dependent rect. 4 2
857 199.70 radiation 1.0 14400 < th dose dependent rect. 24 6
864 199.71 humidity 50.0 43200 < th dose independent rect. 8 1
888 199.73 radiation 20.0 43200 < th dose independent rect. 5 1
889 199.73 wind 9.0 43200 < th dose independent rect. 24 2
892 199.73 humidity 60.0 14400 > th dose independent rect. 19 5
897 199.73 atmosphere 1010.0 4320 > th dose dependent rect. 5 1
956 199.77 radiation 1.0 4320 < th dose dependent rect. 18 7
963 199.78 radiation 20.0 43200 < th dose independent rect. 2 4
965 199.78 radiation 40.0 14400 < th dose independent rect. 15 12
997 199.80 radiation 1.0 4320 < th dose dependent rect. 18 4