Os02g0797400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MCM family protein.
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Os02g0797400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MCM family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.68 | 0.635 | 3.21 | -0.482 | 0.0378 | -0.357 | -1.97 | 1.78 | 0.403 | 8.38 | 3 | 1 | -- | -- |
| 196.75 | 0.653 | 3.21 | -0.476 | 0.0147 | -0.282 | -1.87 | -- | 0.387 | 8.08 | 15.31 | 6 | -- | -- |
| 195.05 | 0.65 | 3.2 | -0.52 | 0.0295 | -0.319 | -- | 1.03 | 0.43 | 7.03 | 21.26 | 4 | -- | -- |
| 197.07 | 0.654 | 3.22 | -0.49 | 0.0717 | -0.336 | -- | -- | 0.405 | 7.15 | 20 | 11 | -- | -- |
| 192.25 | 0.646 | 3.21 | -0.51 | -- | -0.34 | -- | 1.04 | 0.406 | -- | 20.02 | 10 | -- | -- |
| 198.67 | 0.661 | 3.22 | -0.53 | 0.147 | -- | -1.55 | -- | 0.388 | 5.25 | -- | -- | -- | -- |
| 201.89 | 0.665 | 3.22 | -0.536 | 0.247 | -- | -- | -- | 0.394 | 1.34 | -- | -- | -- | -- |
| 196.2 | 0.652 | 3.21 | -0.522 | -- | -0.344 | -- | -- | 0.413 | -- | 20.25 | 83 | -- | -- |
| 203.34 | 0.664 | 3.21 | -- | 0.0791 | -0.38 | -- | -- | 0.45 | 7.48 | 20 | 18 | -- | -- |
| 205.63 | 0.67 | 3.22 | -0.526 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 209.45 | 0.677 | 3.21 | -- | 0.237 | -- | -- | -- | 0.453 | 1.25 | -- | -- | -- | -- |
| 201.94 | 0.662 | 3.2 | -- | -- | -0.426 | -- | -- | 0.481 | -- | 20.09 | 83 | -- | -- |
| 212.94 | 0.681 | 3.2 | -- | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 14 | 18 |
| 16 | 175.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 10 |
| 46 | 176.92 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 19 |
| 58 | 177.35 | temperature | 25 | 90 | > th | dose independent | rect. | 14 | 10 |
| 59 | 177.36 | wind | 7 | 90 | < th | dose independent | rect. | 9 | 5 |
| 109 | 178.50 | wind | 5 | 270 | < th | dose independent | rect. | 9 | 2 |
| 136 | 179.03 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 2 |
| 147 | 179.19 | wind | 9 | 90 | < th | dose dependent | rect. | 9 | 5 |
| 196 | 179.91 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 198 | 179.94 | wind | 9 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 272 | 180.86 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 22 |
| 276 | 180.88 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 7 |
| 311 | 181.05 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 2 |
| 312 | 181.06 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 2 |
| 325 | 181.15 | wind | 7 | 90 | < th | dose independent | rect. | 23 | 15 |
| 382 | 181.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 388 | 181.65 | radiation | 20 | 10 | > th | dose independent | sin | 2 | NA |
| 397 | 181.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 425 | 181.77 | radiation | 1 | 90 | < th | dose dependent | sin | 13 | NA |
| 426 | 181.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 433 | 181.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 451 | 181.91 | radiation | 1 | 90 | < th | dose independent | sin | 13 | NA |
| 455 | 181.92 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 5 |
| 457 | 181.93 | radiation | 20 | 30 | > th | dose independent | rect. | 10 | 4 |
| 458 | 181.93 | radiation | 30 | 10 | < th | dose independent | rect. | 14 | 19 |
| 460 | 181.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 482 | 182.01 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 12 |
| 493 | 182.07 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 5 |
| 502 | 182.12 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 4 |
| 504 | 182.12 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 544 | 182.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 600 | 182.44 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 2 |
| 603 | 182.46 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 7 |
| 625 | 182.52 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 9 |
| 667 | 182.65 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 3 |
| 676 | 182.68 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |
| 795 | 182.73 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 6 |
| 808 | 182.76 | humidity | 90 | 90 | < th | dose independent | rect. | 9 | 5 |
| 814 | 182.77 | radiation | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 842 | 182.86 | temperature | 30 | 30 | < th | dose dependent | sin | 14 | NA |
| 844 | 182.87 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 14 | 19 |
| 872 | 182.93 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 2 |