BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0797400 Os02g0797400|AK073980
(729 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0797400 MCM family protein 1508 0.0
Os11g0484300 Similar to Mcm2-prov protein 343 3e-94
Os05g0476200 Similar to DNA replication licensing factor MC... 332 8e-91
Os05g0235800 MCM protein 6 family protein 329 6e-90
AK110005 324 2e-88
Os12g0560700 Similar to PROLIFERA protein 314 1e-85
AK110122 291 1e-78
Os06g0218500 MCM family protein 264 2e-70
Os05g0464100 MCM family protein 156 5e-38
Os05g0173700 Similar to DNA replication licensing factor MC... 77 6e-14
>Os02g0797400 MCM family protein
Length = 729
Score = 1508 bits (3905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/729 (100%), Positives = 729/729 (100%)
Query: 1 MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLV 60
MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLV
Sbjct: 1 MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLV 60
Query: 61 HNRDHVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEP 120
HNRDHVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEP
Sbjct: 61 HNRDHVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEP 120
Query: 121 ATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVK 180
ATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVK
Sbjct: 121 ATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVK 180
Query: 181 TVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTG 240
TVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTG
Sbjct: 181 TVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTG 240
Query: 241 ELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGAVGVKQPYIRVVGLEQSRD 300
ELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGAVGVKQPYIRVVGLEQSRD
Sbjct: 241 ELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGAVGVKQPYIRVVGLEQSRD 300
Query: 301 ANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRL 360
ANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRL
Sbjct: 301 ANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRL 360
Query: 361 PDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSR 420
PDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSR
Sbjct: 361 PDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSR 420
Query: 421 EFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 480
EFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL
Sbjct: 421 EFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVL 480
Query: 481 AAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVHASGA 540
AAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVHASGA
Sbjct: 481 AAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVHASGA 540
Query: 541 AASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRA 600
AASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRA
Sbjct: 541 AASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRA 600
Query: 601 AAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHLNLS 660
AAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHLNLS
Sbjct: 601 AAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHLNLS 660
Query: 661 PDIANEIKQAEAQIKRRMGIGSHISERRLIDELNRMGMNESIVRRALLIMHQRDEVEYKR 720
PDIANEIKQAEAQIKRRMGIGSHISERRLIDELNRMGMNESIVRRALLIMHQRDEVEYKR
Sbjct: 661 PDIANEIKQAEAQIKRRMGIGSHISERRLIDELNRMGMNESIVRRALLIMHQRDEVEYKR 720
Query: 721 ERHVIVRKA 729
ERHVIVRKA
Sbjct: 721 ERHVIVRKA 729
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 343 bits (880), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 227/657 (34%), Positives = 341/657 (51%), Gaps = 54/657 (8%)
Query: 29 DLTRHSALRKFKEFLRGFTGP---TGDFPY----RESLVHNRDHVTVAIEDLDAFDAELS 81
D R +KFKEFL + P G+F Y E ++ N+ + + + ++
Sbjct: 237 DEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIA 296
Query: 82 DKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSI 141
+ +P L + E A V+ L + + +++ +R+I
Sbjct: 297 IWLADAPQSVLEVMEEVAKNVVFDLHKNYRN--------IHQKIYVRITNLPVYDQIRNI 348
Query: 142 GADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVP 201
+++ +++I G+ S V + V C C +V P + SC
Sbjct: 349 RQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLG-PFFQNSYTEVKVGSCPECQ 407
Query: 202 QPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPG 261
G P+ +++ Y + Q L LQE+P VP G LPR + + L+ PG
Sbjct: 408 SKG-------PFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPG 460
Query: 262 TRLTVIGIYSV-YQASANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEF 320
+ V GIY+ + S N K V + + + +D S T +++ E ++
Sbjct: 461 EEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFS--AYKLTDEDKAEIEKL 518
Query: 321 AQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPST 380
A+ P +I I PSIYGH D+K AIA +FGG +K + RLRGDI+VLLLGDP T
Sbjct: 519 AKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGT 578
Query: 381 AKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCID 440
AKSQFLK+VEKT AVYT+GKG+SA GLTA+V +D +RE+ LEGGA+VLAD G+ ID
Sbjct: 579 AKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLID 638
Query: 441 EFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNI 500
EFDKM +DRV+IHEAMEQQ+ISI+KAGI T L +R SV+AAANPI GRYD KT N+
Sbjct: 639 EFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNV 698
Query: 501 DLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVHASG--------------------A 540
+L I+SRFD++ +VKD+ D+ +A ++ HA A
Sbjct: 699 ELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLA 758
Query: 541 AASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRA 600
AA + D ++ LK+YI Y ++ P++ + + + + Y E+R R+ +H G
Sbjct: 759 AARQADPDIL-SQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELR---RESSHGQG-- 812
Query: 601 AAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHL 657
+PI VR +E+IIR+SE+ A+M L S + E V+ A R+ S + + G+ + L
Sbjct: 813 --VPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFISTQKFGVQKAL 867
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 332 bits (850), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 221/655 (33%), Positives = 334/655 (50%), Gaps = 71/655 (10%)
Query: 37 RKFKEFLRGFTGPTGDFPYRESLVHNRDH-VTVAIEDLDAFDAELSDKIRKSPADYLPLF 95
R F +FL G +V N+ H + + ++DL +L+ ++ +SPA+Y+
Sbjct: 13 RAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHSLDLARRVIRSPAEYMQPA 72
Query: 96 ETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGI 155
A +EV +L K E + +G + ++ R + + ++ +V + GI
Sbjct: 73 SDAVTEVARNLDPKFLKEGQRVLVGFSGPFGF------HRVTPRDLMSSFIGTMVCVEGI 126
Query: 156 TIAASRVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDP--- 212
S V+ K VK+V P GG + D G + P
Sbjct: 127 VTKCSLVRPKV------------VKSVHYCPATGGTLSREYRDITSFVGLPTGSVYPTRD 174
Query: 213 -----WIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVI 267
+ +Y D QTL +QE PE+ G+LPR + + V+ LV + PG R++++
Sbjct: 175 ENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIV 234
Query: 268 GIYSVYQASANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDAY 327
G+Y + KG+V + + + +N P +T ++ KE ++R D +
Sbjct: 235 GVYKALPGKS--KGSVSGVFRTVLIANNVSLMNKEANAPV-YTREDLKRMKEISRRNDTF 291
Query: 328 VKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLK 387
+ + + PSIYGH +KKA+ L+ GG +K L +G LRGDI+++++GDPS AKSQ L+
Sbjct: 292 DLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLR 351
Query: 388 FVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRP 447
V AP+A+ T+G+GSS GLTA+V D + E LE GAMVLAD GVVCIDEFDKM
Sbjct: 352 AVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 411
Query: 448 EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTIL 507
+DRVAIHE MEQQT++IAKAGI LN+R SV+AAANPI G YD T NI L ++L
Sbjct: 412 QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLL 471
Query: 508 SRFDLIFIVKDVRMYDQDKRIASHIIKVHA----SGAAASSKNTDASEGEN--------- 554
SRFDL+FIV D + D++I+ H+ ++H G A S T +E ++
Sbjct: 472 SRFDLLFIVLDQMDPEIDRQISEHVARMHRYCTDDGGARSLDKTGYAEEDDGDVNAAIFV 531
Query: 555 -------------------------WLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQK 589
+LK+YI Y + +PRL+++A++ + Y E+R
Sbjct: 532 KYDRMLHGQDRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDG 591
Query: 590 MRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVS 644
A+ +PIT R LE IIRLS + AKM+L VE A ++ N +
Sbjct: 592 ---GANAKSGGGTLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFA 643
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 329 bits (843), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 227/674 (33%), Positives = 336/674 (49%), Gaps = 83/674 (12%)
Query: 39 FKEFLRGFTGPTGDFPYRES---LVHNRDHVTVAIE--DLDAFDAELSDKIRKSPADYLP 93
F EFLR F + E+ + +R+ T+ ++ + F+ L I + + P
Sbjct: 20 FLEFLRRFKEADAAEAFYETELEAMRSRESTTMYVDFAHVMRFNDVLQKAISEEYLRFEP 79
Query: 94 LFETAASEVLASLRSKVAGETGEMEEPATGD------VQIFLSSKENCLSMRSIGADYMS 147
A + R TGE P D + I + +R +G +
Sbjct: 80 YLRNACKRFVMEQR------TGENRAPIISDDSPNKDINIAFYNIPMLKRLRELGTAEIG 133
Query: 148 KLVKIAGITIAASRVKAKATHVTLLCKNCRSV-KTVPCRPGLGGAI--VPRSCDHVPQPG 204
KL + G+ S V+ + T C +C +V K V + I V +C + +
Sbjct: 134 KLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNATCQNRSK-- 191
Query: 205 EEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQ-------T 257
W + +SK+ D Q +++QE +++P G LPR++ + + +V+
Sbjct: 192 --------WALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGDTV 243
Query: 258 IVPGTRLTVIGIYSVY----------------QASANQKGAVGVKQPYIRVVGLEQSRDA 301
I GT + V + ++ S Q+G G+K +R + + A
Sbjct: 244 IFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLKSLGVRDLSYRLAFVA 303
Query: 302 NS---------------------NGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYG 340
NS + FT +EE E PD + KI I P+++G
Sbjct: 304 NSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMRNVPDFFNKIVDSICPTVFG 363
Query: 341 HSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTS 400
H ++K+AI +L GG K +G+ LRGDI+V ++GDPS AKSQFLK+ P +VYTS
Sbjct: 364 HQEIKRAILLMLLGGVHKITHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTS 423
Query: 401 GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQ 460
GK SSAAGLTA+V ++ + EF +E GA++LAD G+ CIDEFDKM +D+VAIHEAMEQQ
Sbjct: 424 GKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQ 483
Query: 461 TISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVR 520
TISI KAGI LN+RTS+LAAANP GRYD K + N+ L ILSRFDL++I+ D
Sbjct: 484 TISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDEP 543
Query: 521 MYDQDKRIASHIIKVHASGAAASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQ 580
+ D IA HI++VH A + +E LKRYI + + + KP+LS +A ++L
Sbjct: 544 DENTDYHIAHHIVRVHQKREEALAPAFSTAE----LKRYIAFAK-SLKPQLSSEAKKVLV 598
Query: 581 NKYVEIRQKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRL 640
YV +R+ G A +TVRQLEA+IRLSE++A+ L V P HV A +L
Sbjct: 599 ESYV----TLRRGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLPAHVRMAVKL 654
Query: 641 FNVSTVDAARSGIN 654
S + S ++
Sbjct: 655 LKTSIISVESSEVD 668
>AK110005
Length = 954
Score = 324 bits (830), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 218/641 (34%), Positives = 330/641 (51%), Gaps = 40/641 (6%)
Query: 32 RHSALRKFKEFLRGFTGPTGDFPYRESLVH----NRDHVTVAIEDLDAFDAELSDKIRKS 87
R + +R+F+ FL + G Y + + N + + ++ L A L+ + S
Sbjct: 224 RRAIVREFRNFLVTYVDENGVSVYGQRIKTLGETNAESLEISFLHLVDSKAILAYFLANS 283
Query: 88 PADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMS 147
PA LP+F+ A +V+ + +V + ++ ++R + +++
Sbjct: 284 PASMLPIFDEVAFDVIMLYYPSY--------DRIHSEVHVRIADLPTSSTLRDLRQGHLN 335
Query: 148 KLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVPQPGEEP 207
LV+++G+ S V + +V C C +V P I C + Q G
Sbjct: 336 SLVRVSGVVTRRSGVFPQLKYVKFDCLKCGAVLG-PFWQDANQEIKISYCSNCEQRG--- 391
Query: 208 CPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVI 267
P+ +++ Y + Q + LQE+P VP G LPR+ + + L+ + PG + +
Sbjct: 392 ----PFRINSEQTVYRNYQKMTLQESPGSVPPGRLPRHREVILLWDLIDSAKPGEEVEIT 447
Query: 268 GIY-SVYQASANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDA 326
G+Y + + AS N K V + + + DA S T ++E + K A+
Sbjct: 448 GVYRNNFDASLNTKNGFPVFATVLEANHIAKRDDAFS--AFRLTEEDERQIKALAKDERI 505
Query: 327 YVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFL 386
+I I PSIYGH D+K AIA LFGG K + R+RGDI+VLLLGDP TAKSQFL
Sbjct: 506 GKRIIKSIAPSIYGHEDIKTAIALSLFGGVSKDIGGKHRIRGDINVLLLGDPGTAKSQFL 565
Query: 387 KFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMR 446
K+VEKTA AV+T+G+G+SA GLTASV +D +RE+ LEGGA+VLAD GV IDEFDKM
Sbjct: 566 KYVEKTASRAVFTTGQGASAVGLTASVRKDPVTREWTLEGGALVLADKGVCLIDEFDKMN 625
Query: 447 PEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTI 506
DR +IHEAMEQQ ISI+KAGI T L +R +++AAANPI GRY+ N++L I
Sbjct: 626 DADRTSIHEAMEQQQISISKAGIVTTLQARCAIVAAANPIRGRYNPTIPFNQNVELTEPI 685
Query: 507 LSRFDLIFIVKDVRMYDQDKRIASHIIKVHASGAAASSKNTDAS----------EGENWL 556
LSRFD + +VKD +D +A ++ H TD ++ L
Sbjct: 686 LSRFDALCVVKDTVDPVKDDMLARFVVGSHLRSHPKFDDETDEQLVATSLDADILPQDLL 745
Query: 557 KRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRAAAIPITVRQLEAIIRL 616
K+YI Y R +P L+ + + Y ++R+ E+ + PITVR LE++IR+
Sbjct: 746 KKYIMYARDHVRPSLNALDQDRISRLYADLRR-------ESISTGSFPITVRHLESMIRM 798
Query: 617 SESLAKMRLTSVATPEHVEEAFRLFNVSTVDAARSGINEHL 657
+E+ AKM L + ++ A R S V A + + + L
Sbjct: 799 AEASAKMHLRDYVRTDDIDVAIRATVESFVSAQKMSVKKTL 839
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 314 bits (805), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 227/664 (34%), Positives = 326/664 (49%), Gaps = 73/664 (10%)
Query: 40 KEFLRGFTGPTGDFPYRESL--VHNRDHVTVAIEDLDAF-----DAELSDKIRKSPADYL 92
K+FL F GP G+ Y L V NR V IE D F D E ++ ++ Y+
Sbjct: 19 KDFLANFAGPRGEPKYLNILQDVANRKIRAVQIELDDLFHYKDADDEFLQRVTENTKRYI 78
Query: 93 PLFETAASEVLASLRSKVAGE-------TGEMEEPATG-------------------DVQ 126
+F A E++ A + T ++E A G +V
Sbjct: 79 GIFADAIDELMPESTEAYAVDEDRDILMTQRVDEGADGGADGTDPLQRMPPEIRRFFEVY 138
Query: 127 IFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCRP 186
I SK L++R + A + +LVKI+GI S VK C+ C
Sbjct: 139 IKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEEC---------- 188
Query: 187 GLGGAIVPRSCDHVPQP----GEEPCPLDP----WIAVPDKSKYVDLQTLKLQENPEDVP 238
G I V P + C L+ I SK++ Q +KLQE E VP
Sbjct: 189 --GFEIYQEVTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELAEHVP 246
Query: 239 TGELPRNMLLSVDRHLVQTIVPGTRLTVIGIY---SVYQASANQKGAVGVKQPYIRVVGL 295
G +PR++ + + L + + PG + + GI+ Y A + G V Y+ + +
Sbjct: 247 KGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPYYGFRAMRAGLVA--DTYLESMSI 304
Query: 296 EQSRDANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGG 355
+ DE+ + A+ D Y K+ + P I+GH DVKKA+ LL G
Sbjct: 305 THFKKKYEE--YELKGDEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGA 362
Query: 356 SKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIR 415
++L DG+++RGD+H+ L+GDP AKSQ LK + AP VYT+G+GSS GLTA+V +
Sbjct: 363 PHRKLTDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQK 422
Query: 416 DGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNS 475
D + EF LEGGA+VLAD G+ IDEFDKM DR AIHE MEQQT+SIAKAGITT LN+
Sbjct: 423 DPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNA 482
Query: 476 RTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKV 535
RT+VLAAANP GRYD +T +NI+L +LSRFDL++++ D + D +A H++ V
Sbjct: 483 RTAVLAAANPAWGRYDMRRTPAENINLPPALLSRFDLLWLILDRADMETDLEMARHVVHV 542
Query: 536 HASGAAASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVEIRQKMRQQAH 595
H + + + T L+ YI R P + + E + Y IRQ+
Sbjct: 543 HQNLESPALGFTPLEPP--VLRAYISTARRVV-PSVPRELEEYIATAYSSIRQE-----E 594
Query: 596 ETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFNVSTV-----DAAR 650
A T+R L +I+R+S +LA++R + V+EA RL +S D R
Sbjct: 595 AKSNAPHSYTTIRTLLSILRISIALARLRFSETVAQSDVDEALRLMQMSKYSLYSDDRQR 654
Query: 651 SGIN 654
SG++
Sbjct: 655 SGLD 658
>AK110122
Length = 568
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 261/472 (55%), Gaps = 9/472 (1%)
Query: 66 VTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDV 125
+ + I+DL +++ E + + P ++LP F+ AA V L + + ++ G
Sbjct: 52 LIINIDDLRSYNREFATGLLNEPNEFLPAFD-AALHVSVELAHNAIKDDIKNKQYYIGLR 110
Query: 126 QIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRSVKTVPCR 185
F N ++RSI ++ K++ + GI S V+ K C+N R
Sbjct: 111 GSFGDHHVNPRTLRSI---HLGKMMSLEGIVTRCSLVRPKILKSVHYCENTAKFHQREYR 167
Query: 186 PGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPEDVPTGELPRN 245
+P S P E L S++ D Q + +QE PE P G+LPR+
Sbjct: 168 DATMYGTLPPSSTVYPTEDESGNRLTTEYG---HSQFRDHQMISIQEMPERAPPGQLPRS 224
Query: 246 MLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGAVGVKQPYI-RVVGLEQSRDANSN 304
+ + +D +V PG R+ ++G+Y Q + + I + L S+
Sbjct: 225 IDVVMDDDMVDRCKPGDRIQLVGMYRSLGNRVGQSSSSTFRTLMIGNNINLLSSKAGGGI 284
Query: 305 GPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKRLPDGV 364
++ T + + A+R + + + + PSIYGH +KKA+ LL GG +K LP+G
Sbjct: 285 AQAHITDTDIRNINKIAKRKNVFNLLSQSLAPSIYGHEYIKKAV-LLLLGGEEKNLPNGT 343
Query: 365 RLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYL 424
+RGDI++L++GDPSTAKSQ L+FV TAP+A+ T+G+GSS GLTA+V D + E L
Sbjct: 344 HIRGDINILMVGDPSTAKSQMLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERRL 403
Query: 425 EGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAAN 484
E GAMVLAD GV+CIDEFDKM DRVAI+E MEQQT++IAKAGI T LN+R SV+AAAN
Sbjct: 404 EAGAMVLADRGVICIDEFDKMSDVDRVAIYEVMEQQTVTIAKAGIHTSLNARCSVVAAAN 463
Query: 485 PIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIASHIIKVH 536
PI G+YD K NI L ++LSRFDL+F+V D D+ I+ H++++H
Sbjct: 464 PIYGQYDVHKDPHKNIALPDSLLSRFDLLFVVTDDVDEQHDRMISEHVLRMH 515
>Os06g0218500 MCM family protein
Length = 674
Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 200/624 (32%), Positives = 310/624 (49%), Gaps = 50/624 (8%)
Query: 66 VTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVL-----ASLRSKVAGETGEMEEP 120
+ + +L FD E++ ++ P D L LF+ AA L A+ R+ E E
Sbjct: 48 LVIDFAELLEFDPEVAHQLYDYPKDVLELFDAAAQRALDKFDAAARRADKRKAGDETMEK 107
Query: 121 ATGDVQI-----FLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKN 175
V++ L E S+ + + L+ + G I + VK C+
Sbjct: 108 KFVHVRVNTSGSALECPEASPSIGKVRVKHRGTLLTLKGTVIRSGGVKMIEGERKYQCRK 167
Query: 176 CRSVKTVPCRPGLGGAI-VPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENP 234
C+ TV G I +P SC G C + + D D Q +K+QEN
Sbjct: 168 CKCRFTVHPELEAGNRITLPASCKSKSAKG---CGGANFQLIEDSITCHDYQEIKIQENI 224
Query: 235 EDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGAVGVKQPYIRVVG 294
+ + G +PR+M + + LV + G + V G S + S + K P +
Sbjct: 225 QLLGVGSIPRSMPIILMDDLVDIVKAGDDVVVTGRLSA-KWSPDIKDVRSNLDPMLIANF 283
Query: 295 LEQSRDANSNGPSNFTLDEEME----FKEFAQRPDAY-----VKICSMIGPSIYGHSDVK 345
+ ++ + S+ LD +E F+EF A I I P IYG VK
Sbjct: 284 VRRTNELKSD------LDIPVEIINKFEEFWAASRATPLKGRNSILKGICPQIYGLFTVK 337
Query: 346 KAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSS 405
A+A L GG + G ++RG+ H+LL+GDP T KSQFLKF K + +V T+G GS+
Sbjct: 338 LAVALTLIGGVQHVDASGTKVRGEPHMLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST 397
Query: 406 AAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIA 465
+AGLT + ++DG E+ LE GA+VLADGG+ CIDEFD MR DR IHEAMEQQTISIA
Sbjct: 398 SAGLTVTAVKDGG--EWMLEAGALVLADGGLCCIDEFDSMREHDRTTIHEAMEQQTISIA 455
Query: 466 KAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQD 525
KAG+ T LN+RT+V A NP G+YD ++ N L +LSRFD++ ++ D + D
Sbjct: 456 KAGLVTTLNTRTTVFGATNP-KGQYDPNESLSVNTTLSGPLLSRFDIVLVLLDTKNKKWD 514
Query: 526 KRIASHIIKVHASGAAASSKNTDASEGENWLKRYIEYCRVTCKPRLSEKAAEMLQNKYVE 585
K ++SHI+ + + + + + L+RYI Y + KP L+++A ++ + Y
Sbjct: 515 KIVSSHILAENTEEKKGKTSDPEVMWTLSMLRRYIHYVKQHFKPVLTKEAERVISSYY-- 572
Query: 586 IRQKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKM-------RLTSVATPEHVEEAF 638
Q+ RQ +G A TVR LE++IRL+++ A++ +L ++A +E +
Sbjct: 573 --QRQRQ----SGTRNAARTTVRMLESLIRLAQAHARLMFRNDVTKLDAIAAILCIESS- 625
Query: 639 RLFNVSTVDAARSGINEHLNLSPD 662
+ + VD A + ++ + +PD
Sbjct: 626 -MTTSAIVDTAGNALHSNFTENPD 648
>Os05g0464100 MCM family protein
Length = 481
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 170/351 (48%), Gaps = 34/351 (9%)
Query: 125 VQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRS-VKTVP 183
+ I L + ++++++ A Y+ KLV + G + S VK + C C + V
Sbjct: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
Query: 184 CRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQE--NPEDVPTGE 241
C G P SC + C +I + +K +D Q +++QE + E G
Sbjct: 186 CD---GKFSPPVSCSI------QGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGR 236
Query: 242 LPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGA------VGVKQPYIRVVGL 295
+PR + + LV +PG +TV GI V + G G+ Y+ + +
Sbjct: 237 VPRTIECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISV 296
Query: 296 EQSRDANSNGPSN----------FTLDEEMEF-KEFAQR--PDAYVKICSMIGPSIYGHS 342
S+ ++G S+ FT ++++EF +F + D + +I PSIYGH
Sbjct: 297 RNSKVHAASGNSDAASGSFGFQAFT-EKDLEFISKFKEEHGADVFRQILHSFCPSIYGHE 355
Query: 343 DVKKAIACLLFGGSKKRLPD--GVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTS 400
VK I LFGG +K D V +RGDIH +++GDP KSQ L+ +P +Y
Sbjct: 356 LVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVC 415
Query: 401 GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 451
G ++ AGLT +V++D S ++ E GAMVLAD G+ CIDEFDKM E +V
Sbjct: 416 GNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
>Os05g0173700 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 101
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 378 PSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGG----AMVLAD 433
PS A SQ + V IA+ T+G+ SS GL A+V D + E GG A+VLAD
Sbjct: 2 PSIANSQLRRAV---MTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
Query: 434 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 476
VCIDEFDKM +DRVAIH +E +T++I AGI LN+R
Sbjct: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,298,808
Number of extensions: 1056351
Number of successful extensions: 2675
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2650
Number of HSP's successfully gapped: 10
Length of query: 729
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 621
Effective length of database: 11,396,689
Effective search space: 7077343869
Effective search space used: 7077343869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)