Os05g0464100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MCM family protein.
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Os05g0464100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MCM family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.88 | 0.506 | 3.05 | -0.00824 | 0.0478 | 1.33 | -0.0441 | -0.687 | 0.0394 | 14.1 | 10.1 | 103 | -- | -- |
| 115.87 | 0.501 | 3.05 | 0.00054 | 0.0459 | 1.44 | -0.0358 | -- | 0.0407 | 13.9 | 10.07 | 103 | -- | -- |
| 115.87 | 0.501 | 3.05 | -0.00226 | 0.0472 | 1.39 | -- | -0.282 | 0.0444 | 13.9 | 10.04 | 91 | -- | -- |
| 115.87 | 0.501 | 3.05 | -0.000437 | 0.0465 | 1.45 | -- | -- | 0.04 | 13.9 | 10.01 | 95 | -- | -- |
| 115.59 | 0.501 | 3.05 | -0.00176 | -- | 1.42 | -- | -1.61 | 0.0429 | -- | 10.1 | 175 | -- | -- |
| 121.02 | 0.516 | 3.06 | -0.0753 | 0.0857 | -- | -0.247 | -- | 0.0153 | 15.1 | -- | -- | -- | -- |
| 121.22 | 0.516 | 3.06 | -0.0806 | 0.0843 | -- | -- | -- | 0.0138 | 14.7 | -- | -- | -- | -- |
| 115.63 | 0.501 | 3.05 | 0.000624 | -- | 1.82 | -- | -- | 0.0414 | -- | 10.1 | 172 | -- | -- |
| 115.87 | 0.501 | 3.05 | -- | 0.0463 | 1.45 | -- | -- | 0.0401 | 13.9 | 10.01 | 95 | -- | -- |
| 121.63 | 0.515 | 3.06 | -0.0842 | -- | -- | -- | -- | 0.0117 | -- | -- | -- | -- | -- |
| 121.39 | 0.515 | 3.06 | -- | 0.0859 | -- | -- | -- | 0.0228 | 14.7 | -- | -- | -- | -- |
| 115.63 | 0.501 | 3.05 | -- | -- | 1.82 | -- | -- | 0.0414 | -- | 10.1 | 172 | -- | -- |
| 121.82 | 0.515 | 3.06 | -- | -- | -- | -- | -- | 0.021 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.20 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 9 | 109.23 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 29 | 109.95 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 12 |
| 37 | 110.01 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 10 |
| 41 | 110.05 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 9 |
| 51 | 110.11 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 73 | 110.69 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 81 | 110.74 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 89 | 110.91 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 4 |
| 93 | 110.92 | wind | 1 | 30 | < th | dose dependent | rect. | 13 | 3 |
| 261 | 111.69 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 307 | 112.47 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 324 | 112.65 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 343 | 112.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 355 | 112.76 | radiation | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 382 | 112.91 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 388 | 112.99 | wind | 7 | 90 | > th | dose independent | rect. | 22 | 1 |
| 390 | 112.99 | wind | 7 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 392 | 113.00 | wind | 7 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 408 | 113.26 | wind | 7 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 437 | 113.48 | radiation | 30 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 469 | 113.93 | wind | 1 | 90 | < th | dose independent | sin | 22 | NA |
| 479 | 114.18 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 4 |
| 533 | 114.34 | wind | 1 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 543 | 114.46 | wind | 1 | 90 | > th | dose independent | sin | 22 | NA |
| 558 | 114.59 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 2 |
| 563 | 114.59 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 565 | 114.60 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 652 | 114.82 | wind | 9 | 10 | > th | dose dependent | sin | 12 | NA |
| 850 | 115.40 | wind | 9 | 90 | > th | dose independent | sin | 13 | NA |
| 946 | 115.73 | wind | 9 | 90 | < th | dose independent | sin | 13 | NA |
| 963 | 115.90 | wind | 1 | 90 | > th | dose independent | rect. | 9 | 12 |