BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0464100 Os05g0464100|AK108033
(481 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0464100 MCM family protein 945 0.0
AK073132 251 1e-66
Os05g0235800 MCM protein 6 family protein 196 3e-50
Os12g0560700 Similar to PROLIFERA protein 175 5e-44
AK110005 167 1e-41
Os11g0484300 Similar to Mcm2-prov protein 167 1e-41
Os05g0476200 Similar to DNA replication licensing factor MC... 167 2e-41
Os06g0218500 MCM family protein 158 8e-39
Os02g0797400 MCM family protein 150 2e-36
AK110122 145 5e-35
>Os05g0464100 MCM family protein
Length = 481
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/481 (97%), Positives = 467/481 (97%)
Query: 1 MYDDGPRKGKPGGLSMDAATAAGLAAVWPEYFPEESEFAADGRSARLAADLVDLFSSPDA 60
MYDDGPRKGKPGGLSMDAATAAGLAAVWPEYFPEESEFAADGRSARLAADLVDLFSSPDA
Sbjct: 1 MYDDGPRKGKPGGLSMDAATAAGLAAVWPEYFPEESEFAADGRSARLAADLVDLFSSPDA 60
Query: 61 SDLLSRVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQL 120
SDLLSRVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQL
Sbjct: 61 SDLLSRVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQL 120
Query: 121 GDINKINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATK 180
GDINKINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATK
Sbjct: 121 GDINKINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATK 180
Query: 181 FPRVFCDGKFSPPVSCSIQGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT 240
FPRVFCDGKFSPPVSCSIQGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT
Sbjct: 181 FPRVFCDGKFSPPVSCSIQGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT 240
Query: 241 IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK 300
IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK
Sbjct: 241 IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK 300
Query: 301 VHXXXXXXXXXXXXXXFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAG 360
VH FQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAG
Sbjct: 301 VHAASGNSDAASGSFGFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAG 360
Query: 361 ITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTT 420
ITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTT
Sbjct: 361 ITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTT 420
Query: 421 NAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQVLTLYKLHSEMLIRK 480
NAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQVLTLYKLHSEMLIRK
Sbjct: 421 NAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQVLTLYKLHSEMLIRK 480
Query: 481 P 481
P
Sbjct: 481 P 481
>AK073132
Length = 184
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/121 (99%), Positives = 121/121 (100%)
Query: 66 RVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDINK 125
+VEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDINK
Sbjct: 64 QVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDINK 123
Query: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF
Sbjct: 124 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 183
Query: 186 C 186
C
Sbjct: 184 C 184
>Os05g0235800 MCM protein 6 family protein
Length = 830
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 189/370 (51%), Gaps = 35/370 (9%)
Query: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
INI YN L+ L A I KL V G V + S V+P +LQ F+C+ C V
Sbjct: 111 INIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVE 170
Query: 186 CDGKFSPPVSCSIQGCKSRT-FIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRTIECE 244
K++ P+ C C++R+ + +R +K D+Q++R+QE + + G +PR+++
Sbjct: 171 QQFKYTEPIICVNATCQNRSKWALLRQESKFTDWQRVRMQE--TSKEIPAGSLPRSLDVI 228
Query: 245 LTEDLVDCCIPGETVTVTGIVKVLNNYMDVG--GGKSKSRNQ---------------GLY 287
L ++V+ G+TV TG V + + M + G +++ R + GL
Sbjct: 229 LRHEIVEKARAGDTVIFTGTVVAVPDVMALTSPGERAECRREAPQRKNGSGVQEGVKGLK 288
Query: 288 YLYLEAISVR-----------NSKVHXXXXXXXXXXXXXXFQAFTEKDLEFISKFKEEHG 336
L + +S R + + Q FTE++ + + + + +
Sbjct: 289 SLGVRDLSYRLAFVANSVQVADGRREVDIRDRDIDGDDSERQKFTEEEEDEVVRMR--NV 346
Query: 337 ADVFRQILHSFCPSIYGHELVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLG 396
D F +I+ S CP+++GH+ +K I L L GGV H I + +RGDI+ +VGDP
Sbjct: 347 PDFFNKIVDSICPTVFGHQEIKRAILLMLLGGV--HKITHEGINLRGDINVCIVGDPSCA 404
Query: 397 KSQLLQAAAAVSPRGIYVCGNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDE 456
KSQ L+ A + PR +Y G +++ AGLT V K+ + ++ EAGA++LAD GICCIDE
Sbjct: 405 KSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDE 464
Query: 457 FDKMSAEHQV 466
FDKM + QV
Sbjct: 465 FDKMDIKDQV 474
>Os12g0560700 Similar to PROLIFERA protein
Length = 725
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 182/354 (51%), Gaps = 36/354 (10%)
Query: 125 KINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRV 184
++ I+ ++ + ++ +KA+ I +LV + G V + S VKPL+ + C +C + +
Sbjct: 136 EVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQE 195
Query: 185 FCDGKFSPPVSCSIQGCKSR----TFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT 240
F P C Q CK I +K + FQ++++QELA E +G +PR+
Sbjct: 196 VTARVFMPLFECPSQRCKLNKAKGNLILQLRASKFLKFQEVKLQELA--EHVPKGHIPRS 253
Query: 241 IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK 300
+ L +L PG+ V ++GI + Y G R + YLE++S+ + K
Sbjct: 254 LTVHLRGELTRKVAPGDVVEMSGIFLPMPYY-----GFRAMRAGLVADTYLESMSITHFK 308
Query: 301 VHXXXXXXXXXXXXXXFQAFTEK--DLEFISKFKEEHGADVFRQILHSFCPSIYGHELVK 358
++ + K + E I + E+ D++ ++ S P I+GHE VK
Sbjct: 309 --------------KKYEEYELKGDEQEQIDRLAED--GDIYNKLARSLAPEIFGHEDVK 352
Query: 359 AGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNT 418
+ L L G + D K+ RGD+H ++GDPG+ KSQLL+ V+PRG+Y G
Sbjct: 353 KALLLLLVGAPHRKLTDGMKI--RGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG 410
Query: 419 TTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKM-----SAEHQVL 467
++ GLT AV KD ++N++ E GA+VLAD GIC IDEFDKM +A H+V+
Sbjct: 411 SSGVGLTAAVQKDPVTNEFVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVM 464
>AK110005
Length = 954
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 181/346 (52%), Gaps = 39/346 (11%)
Query: 124 NKINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPR 183
+++++R+ + + L++L+ ++ LV V G V + S V P + + F C+KC
Sbjct: 311 SEVHVRIADLPTSSTLRDLRQGHLNSLVRVSGVVTRRSGVFPQLKYVKFDCLKCGAVLGP 370
Query: 184 VFCDGKFSPPVS-CSIQGCKSRTFIPMRSTAKLM-DFQKIRIQELASGESHEEGRVPRTI 241
+ D +S CS C+ R + S + ++QK+ +QE S S GR+PR
Sbjct: 371 FWQDANQEIKISYCS--NCEQRGPFRINSEQTVYRNYQKMTLQE--SPGSVPPGRLPRHR 426
Query: 242 ECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQG--LYYLYLEA--ISVR 297
E L DL+D PGE V +TG+ + NN+ S + G ++ LEA I+ R
Sbjct: 427 EVILLWDLIDSAKPGEEVEITGVYR--NNF-----DASLNTKNGFPVFATVLEANHIAKR 479
Query: 298 NSKVHXXXXXXXXXXXXXXFQAF--TEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHE 355
+ F AF TE+D I ++ + ++I+ S PSIYGHE
Sbjct: 480 DD----------------AFSAFRLTEEDERQIKALAKDER--IGKRIIKSIAPSIYGHE 521
Query: 356 LVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVC 415
+K I L+LFGGV K ++++ RGDI+ +++GDPG KSQ L+ + R ++
Sbjct: 522 DIKTAIALSLFGGVSKDIGGKHRI--RGDINVLLLGDPGTAKSQFLKYVEKTASRAVFTT 579
Query: 416 GNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMS 461
G + GLT +V KD ++ ++ E GA+VLAD+G+C IDEFDKM+
Sbjct: 580 GQGASAVGLTASVRKDPVTREWTLEGGALVLADKGVCLIDEFDKMN 625
>Os11g0484300 Similar to Mcm2-prov protein
Length = 961
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/403 (31%), Positives = 194/403 (48%), Gaps = 44/403 (10%)
Query: 75 SLPVDFQQLSNL-----TWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDINKINIR 129
SL +D++Q + W+ +A P+ L M +V KI +R
Sbjct: 280 SLEIDYKQFIYIHPNIAIWLADA----PQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVR 335
Query: 130 LYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVFCDGK 189
+ N ++N++ ++ ++ + G V + S V P + Q+ F C KC T F +
Sbjct: 336 ITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSY 395
Query: 190 FSPPV-SCSIQGCKSR-TFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRTIECELTE 247
V SC C+S+ F ++QK+ +QE S GR+PR E L
Sbjct: 396 TEVKVGSCP--ECQSKGPFTINVEQTIYRNYQKLTLQE--SPGIVPAGRLPRYKEVILLN 451
Query: 248 DLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQG--LYYLYLEAISVRNSKVHXXX 305
DL+DC PGE + VTGI N D+ S + G ++ +EA V +
Sbjct: 452 DLIDCARPGEEIEVTGI---YTNNFDL----SLNTKNGFPVFATVVEANYVAKKQ----- 499
Query: 306 XXXXXXXXXXXFQAF--TEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAGITL 363
F A+ T++D I K ++ + +I+ S PSIYGHE +K I L
Sbjct: 500 ---------DLFSAYKLTDEDKAEIEKLAKD--PRIGERIVKSIAPSIYGHEDIKTAIAL 548
Query: 364 ALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAG 423
A+FGG +K+ + K +RGDI+ +++GDPG KSQ L+ R +Y G + G
Sbjct: 549 AMFGGQEKNV--KGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVG 606
Query: 424 LTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
LT AV KD ++ ++ E GA+VLADRGIC IDEFDKM+ + +V
Sbjct: 607 LTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRV 649
>Os05g0476200 Similar to DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) (Fragment)
Length = 770
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 47/340 (13%)
Query: 140 KNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVFCDGKFSPPVSCSIQ 199
++L +++I +V V G V K S V+P V++ C R + D S
Sbjct: 110 RDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRD-------ITSFV 162
Query: 200 GCKSRTFIPMRS-----------TAKLMDFQKIRIQELASGESHEEGRVPRTIECELTED 248
G + + P R + D Q + +QE+ E+ G++PRT++ + +D
Sbjct: 163 GLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVP--ENSAPGQLPRTVDIIVEDD 220
Query: 249 LVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEA--ISVRNSKVHXXXX 306
LVD C PG+ V++ G+ K L GKSK G++ L A +S+ N + +
Sbjct: 221 LVDSCKPGDRVSIVGVYKAL-------PGKSKGSVSGVFRTVLIANNVSLMNKEANA--- 270
Query: 307 XXXXXXXXXXFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAGITLALF 366
+T +DL+ + + + D F + +S PSIYGH +K + L +
Sbjct: 271 -----------PVYTREDLKRMKEISRRN--DTFDLLGNSLAPSIYGHLWIKKAVVLLML 317
Query: 367 GGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGLTV 426
GGV+K+ +N +RGDI+ ++VGDP + KSQLL+A ++P I G ++ GLT
Sbjct: 318 GGVEKNL--KNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTA 375
Query: 427 AVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
AV D + + EAGAMVLADRG+ CIDEFDKM+ + +V
Sbjct: 376 AVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRV 415
>Os06g0218500 MCM family protein
Length = 674
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 172/343 (50%), Gaps = 45/343 (13%)
Query: 150 LVTVRGTVLKVSTVKPLVLQLNFQCMKCATKF---PRVFCDGKFSPPVSC---SIQGCKS 203
L+T++GTV++ VK + + +QC KC +F P + + + P SC S +GC
Sbjct: 141 LLTLKGTVIRSGGVKMIEGERKYQCRKCKCRFTVHPELEAGNRITLPASCKSKSAKGCGG 200
Query: 204 RTFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRTIECELTEDLVDCCIPGETVTVTG 263
F + + D+Q+I+IQE + + G +PR++ L +DLVD G+ V VTG
Sbjct: 201 ANFQLIEDSITCHDYQEIKIQE--NIQLLGVGSIPRSMPIILMDDLVDIVKAGDDVVVTG 258
Query: 264 IV--KVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSKVHXXXXXXXXXXXXXXFQAFT 321
+ K + DV L + + R +++ ++
Sbjct: 259 RLSAKWSPDIKDV--------RSNLDPMLIANFVRRTNEL----------------KSDL 294
Query: 322 EKDLEFISKFKEEHGADVF------RQILHSFCPSIYGHELVKAGITLALFGGVQKHSID 375
+ +E I+KF+E A IL CP IYG VK + L L GGVQ +D
Sbjct: 295 DIPVEIINKFEEFWAASRATPLKGRNSILKGICPQIYGLFTVKLAVALTLIGGVQH--VD 352
Query: 376 QNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGLTVAVVKDSMSN 435
+ VRG+ H ++VGDPG GKSQ L+ AA +S R + G +T+AGLTV VKD
Sbjct: 353 ASGTKVRGEPHMLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD--GG 410
Query: 436 DYAFEAGAMVLADRGICCIDEFDKMSAEHQVLTLYKLHSEMLI 478
++ EAGA+VLAD G+CCIDEFD M EH T+++ + I
Sbjct: 411 EWMLEAGALVLADGGLCCIDEFDSMR-EHDRTTIHEAMEQQTI 452
>Os02g0797400 MCM family protein
Length = 729
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 165/351 (47%), Gaps = 34/351 (9%)
Query: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
+ I L + ++++++ A Y+ KLV + G + S VK + C C + V
Sbjct: 125 VQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNCRS-VKTVP 183
Query: 186 CD---GKFSPPVSCSI------QGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGR 236
C G P SC + C +I + +K +D Q +++QE + E G
Sbjct: 184 CRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQE--NPEDVPTGE 241
Query: 237 VPRTIECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISV 296
+PR + + LV +PG +TV GI V + G G+ Y+ + +
Sbjct: 242 LPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQASANQKGA------VGVKQPYIRVVGL 295
Query: 297 RNSKVHXXXXXXXXXXXXXXFQAFT-EKDLEFISKFKEEHGADVFRQILHSFCPSIYGHE 355
S+ FT ++++EF +F + D + +I PSIYGH
Sbjct: 296 EQSR----------DANSNGPSNFTLDEEMEF-KEFAQR--PDAYVKICSMIGPSIYGHS 342
Query: 356 LVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVC 415
VK I LFGG +K D V +RGDIH +++GDP KSQ L+ +P +Y
Sbjct: 343 DVKKAIACLLFGGSKKRLPD--GVRLRGDIHVLLLGDPSTAKSQFLKFVEKTAPIAVYTS 400
Query: 416 GNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMSAEHQV 466
G ++ AGLT +V++D S ++ E GAMVLAD G+ CIDEFDKM E +V
Sbjct: 401 GKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 451
>AK110122
Length = 568
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 193/401 (48%), Gaps = 32/401 (7%)
Query: 70 DGDILSLPVDFQQLSNLTWITEALQENPKEALLSMGAAVHLIVCASRDLQLGDI-NK--- 125
D L + +D + N + T L E P E L + AA+H+ V + + DI NK
Sbjct: 48 DARRLIINIDDLRSYNREFATGLLNE-PNEFLPAFDAALHVSVELAHNAIKDDIKNKQYY 106
Query: 126 INIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKVSTVKPLVLQLNFQCMKCATKFPRVF 185
I +R + + L++ ++ K++++ G V + S V+P +L+ C A R +
Sbjct: 107 IGLRGSFGDHHVNPRTLRSIHLGKMMSLEGIVTRCSLVRPKILKSVHYCENTAKFHQREY 166
Query: 186 CDGKFS---PPVSC--SIQGCKSRTFIPMRSTAKLMDFQKIRIQELASGESHEEGRVPRT 240
D PP S + ++ D Q I IQE+ E G++PR+
Sbjct: 167 RDATMYGTLPPSSTVYPTEDESGNRLTTEYGHSQFRDHQMISIQEMP--ERAPPGQLPRS 224
Query: 241 IECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGKSKSRNQGLYYLYLEAISVRNSK 300
I+ + +D+VD C PG+ + + G+ + L N + G S S + L + I++ +SK
Sbjct: 225 IDVVMDDDMVDRCKPGDRIQLVGMYRSLGNRV---GQSSSSTFRTL--MIGNNINLLSSK 279
Query: 301 VHXXXXXXXXXXXXXXFQAFTEKDLEFISKFKEEHGADVFRQILHSFCPSIYGHELVKAG 360
T+ D+ I+K + +VF + S PSIYGHE +K
Sbjct: 280 AGGGIAQAH----------ITDTDIRNINKIAKR--KNVFNLLSQSLAPSIYGHEYIKKA 327
Query: 361 ITLALFGGVQKHSIDQNKVPVRGDIHAVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTT 420
+ L L GG +K+ N +RGDI+ ++VGDP KSQ+L+ +P I G ++
Sbjct: 328 VLL-LLGGEEKNL--PNGTHIRGDINILMVGDPSTAKSQMLRFVLNTAPLAIATTGRGSS 384
Query: 421 NAGLTVAVVKDSMSNDYAFEAGAMVLADRGICCIDEFDKMS 461
GLT AV D + + EAGAMVLADRG+ CIDEFDKMS
Sbjct: 385 GVGLTAAVTTDKETGERRLEAGAMVLADRGVICIDEFDKMS 425
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,140,253
Number of extensions: 594623
Number of successful extensions: 1612
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1593
Number of HSP's successfully gapped: 11
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)