BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0173700 Os05g0173700|AK063470
(101 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46280.1 | chr5:18769902-18773606 REVERSE LENGTH=777 137 1e-33
AT4G02060.1 | chr4:901484-905297 FORWARD LENGTH=717 88 1e-18
AT2G16440.1 | chr2:7126536-7130665 REVERSE LENGTH=848 84 2e-17
AT1G44900.1 | chr1:16970291-16974457 FORWARD LENGTH=937 81 9e-17
AT5G44635.1 | chr5:18006431-18010542 REVERSE LENGTH=832 81 1e-16
AT2G07690.1 | chr2:3523379-3527388 REVERSE LENGTH=728 79 5e-16
AT2G14050.1 | chr2:5909240-5913817 FORWARD LENGTH=647 56 4e-09
AT3G09660.1 | chr3:2961314-2966166 REVERSE LENGTH=778 54 1e-08
>AT5G46280.1 | chr5:18769902-18773606 REVERSE LENGTH=777
Length = 776
Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 84/103 (81%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS+A SQL RA+M IA +STTGR SSGVGL AAVTSD+ETGERR L AGA+VLAD
Sbjct: 337 PSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERR----LEAGAMVLAD 392
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
+ VCIDEFDKMNDQDRVAIH V+E +TVTI AGIHASLNAR
Sbjct: 393 KGIVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 435
>AT4G02060.1 | chr4:901484-905297 FORWARD LENGTH=717
Length = 716
Score = 87.8 bits (216), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P +A SQL + ++ +A + TTG+ SSGVGL AAV D+ T E GG A+VLAD
Sbjct: 378 PGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGG----ALVLAD 433
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
IDEFDKM++ DR AIH V+E +TV+I AGI SLNAR
Sbjct: 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476
>AT2G16440.1 | chr2:7126536-7130665 REVERSE LENGTH=848
Length = 847
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P + SQL + + ++ + T+GR SS VGL A V D ETGE L +GA+VL+D
Sbjct: 487 PGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGE----TVLESGALVLSD 542
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
R CIDEFDKM+D R +H V+E +TV+I AGI ASLNAR
Sbjct: 543 RGICCIDEFDKMSDSARSMLHEVMEQQTVSIAKAGIIASLNAR 585
>AT1G44900.1 | chr1:16970291-16974457 FORWARD LENGTH=937
Length = 936
Score = 81.3 bits (199), Expect = 9e-17, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTI---ALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P A SQ + V A+ TTG+ +S VGL AAV D T E GG A+VLAD
Sbjct: 551 PGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGG----ALVLAD 606
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
R IDEFDKMNDQDRV+IH +E ++++I AGI SL AR
Sbjct: 607 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 649
>AT5G44635.1 | chr5:18006431-18010542 REVERSE LENGTH=832
Length = 831
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAVMTI---ALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS A SQ + I ++ T+G+ SS GL A V + ETGE + AGA++LAD
Sbjct: 397 PSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGE----FCIEAGALMLAD 452
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
CIDEFDKM+ +D+VAIH +E +T++I AGI A+LNAR
Sbjct: 453 NGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNAR 495
>AT2G07690.1 | chr2:3523379-3527388 REVERSE LENGTH=728
Length = 727
Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 2 PSIANSQLRRAV---MTIALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
PS A SQ + V IA+ T+G+ SS GL A+V D T E GG A+VLAD
Sbjct: 377 PSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYLEGG----AMVLAD 432
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
VCIDEFDKM +DRVAIH +E +T++I AGI LN+R
Sbjct: 433 GGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSR 475
>AT2G14050.1 | chr2:5909240-5913817 FORWARD LENGTH=647
Length = 646
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 2 PSIANSQLRRAVMTI---ALSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P SQ + + A+ TTG S+ GL VT+ ++ GE L AGA+VLAD
Sbjct: 360 PGTGKSQFLKFAAKLSNRAVITTGLGSTSAGL--TVTAVKDGGEWM----LEAGALVLAD 413
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTIA 90
CIDEFD M + DR IH +E +++++A
Sbjct: 414 GGLCCIDEFDSMREHDRATIHEAMEQQSISVA 445
>AT3G09660.1 | chr3:2961314-2966166 REVERSE LENGTH=778
Length = 777
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 2 PSIANSQLRRAVMTIA---LSTTGRVSSGVGLPAAVTSDRETGERRQSGGLVAGAIVLAD 58
P + SQL +A I+ + G ++ GL AV D T + AGA+VLAD
Sbjct: 405 PGLGKSQLLQAAAAISPRGIYVCGNATTRAGLTVAVVKDSMTNDY----AFEAGAMVLAD 460
Query: 59 RCAVCIDEFDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 99
CIDEFDKM + + + A +E + V++ AG+ ASL+AR
Sbjct: 461 GGLCCIDEFDKMTTEHQALLEA-MEQQCVSVAKAGLVASLSAR 502
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,783,379
Number of extensions: 60555
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)