BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0278800 Os12g0278800|AK121774
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 840 0.0
Os12g0405100 Similar to Floral homeotic protein HUA1 169 5e-42
Os11g0472000 Zinc finger, CCCH-type domain containing protein 167 2e-41
Os01g0917400 Zinc finger, CCCH-type domain containing protein 165 8e-41
Os01g0258700 Zinc finger, CCCH-type domain containing protein 137 2e-32
Os01g0257400 Zinc finger, CCCH-type domain containing protein 135 1e-31
Os01g0616400 Similar to Floral homeotic protein HUA1 85 1e-16
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 84 3e-16
Os06g0519400 Zinc finger, CCCH-type domain containing protein 83 4e-16
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/529 (80%), Positives = 427/529 (80%)
Query: 1 MADADARAPPKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGLAIADQGEELLL 60
MADADARAPPKSD QLAGLAIADQGEELLL
Sbjct: 1 MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEEQLAGLAIADQGEELLL 60
Query: 61 PKPTGWEDGPVVVAGDEVSGGEKLPXXXXXXXXXXXXXXDSRPRFPRRPGEPDCTYYVKF 120
PKPTGWEDGPVVVAGDEVSGGEKLP DSRPRFPRRPGEPDCTYYVKF
Sbjct: 61 PKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSRPRFPRRPGEPDCTYYVKF 120
Query: 121 GSCRFGMKCKFNHPARXXXXXXXXXXXXXXXXXXXXXXXXXXXPDDEQQAPKEEYGSYVP 180
GSCRFGMKCKFNHPAR PDDEQQAPKEEYGSYVP
Sbjct: 121 GSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQQAPKEEYGSYVP 180
Query: 181 DISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQ 240
DISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQ
Sbjct: 181 DISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQ 240
Query: 241 EECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSC 300
EECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSC
Sbjct: 241 EECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSC 300
Query: 301 KYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPF 360
KYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPF
Sbjct: 301 KYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPF 360
Query: 361 IAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIP 420
IAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIP
Sbjct: 361 IAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIP 420
Query: 421 GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXXXXXXXXXXXXXIKPDQ 480
GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPR IKPDQ
Sbjct: 421 GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQ 480
Query: 481 PVCTYYGRYGVCKFGPACAYNHPFNFSXXXXXXXXXXXXXXXTPGNYTL 529
PVCTYYGRYGVCKFGPACAYNHPFNFS TPGNYTL
Sbjct: 481 PVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPTPGNYTL 529
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 151/308 (49%), Gaps = 35/308 (11%)
Query: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
++L VA + Q EC+YY G CKFG CK+ H +E A +V LN L
Sbjct: 95 RKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHP--REKAALANRVQLNVL 152
Query: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSS 340
G P+RP EKEC YY+RTG CK+A+ CKFHHP PSN + G + G +
Sbjct: 153 GYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSP--GQHT 210
Query: 341 QPNASI-WPDQRTVNEHHVPFIA----PSPSYSAGMLPPQGMYPPPEWNGY--------- 386
P A W R+ + FIA P S A ++ PQG+ P WN Y
Sbjct: 211 YPGAVTNWTLSRSAS-----FIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSP 265
Query: 387 ---HQVPLNPYYPPGVPFQHFPAAPINHPMYKAPE---IP-GHQQVPSEE-YPERPGQPE 438
+ P+ Y Q +H MY++ + +P G V E +PERP QPE
Sbjct: 266 DDQQRTPVTTQYYGSR--QSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPE 323
Query: 439 CQHFVKSGFCKFRMKCKYHHP--RXXXXXXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGP 496
CQ ++K+G CKF CK+HHP R ++P +PVCT+Y RYG+CKFGP
Sbjct: 324 CQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGP 383
Query: 497 ACAYNHPF 504
C ++HP
Sbjct: 384 NCKFDHPM 391
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 164 PDDEQQAP--KEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPK 221
PDD+Q+ P + YGS + ++ G D G SY+ V G
Sbjct: 265 PDDQQRTPVTTQYYGSR------QSETGGMGDHGMYQ--------SYQGGSVPVG----- 305
Query: 222 ELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLG 281
V + + E Q EC++Y G CKFG CK+ H KE A LN LG
Sbjct: 306 ---VYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHP--KERLVPAPNCALNSLG 360
Query: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNV--ASKDPQLEHENGDAPQQDVQGSS 339
LPLRPGE C +Y R G CK+ NCKF HP + + ++ P+ GD Q S
Sbjct: 361 LPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPR-----GDVSSMHYQLSP 415
Query: 340 SQPNASIWPDQRTVNEHHVP 359
S + I D + H VP
Sbjct: 416 SPGHPGILLDGGSGRSHRVP 435
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 397 PGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKY 456
P + H A M++ + G + + S YPER G+P+C +++++G C+F M CK+
Sbjct: 31 PAIGPHHLGVAAAEEAMWQM-TLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKF 89
Query: 457 HH-PRXXXXXXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
+H P + QP C YY + G CKFG C ++HP
Sbjct: 90 NHPPNRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHP 137
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 146/303 (48%), Gaps = 24/303 (7%)
Query: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
+++ VA + K + Q EC+YY G CKFG CK+ H +E A +V LN L
Sbjct: 55 RKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHP--REKAAIATRVQLNAL 112
Query: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSS 340
G PLRP EKEC YY+RTG CK+ + CKFHHP PSN + G + Q +
Sbjct: 113 GYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQ--HT 170
Query: 341 QPNASI-WPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGY------------H 387
P A WP R+ + P SY+ ++PP G+ P WN Y
Sbjct: 171 YPGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPP-GLVQVPGWNPYAAQIGSSSSDDQQ 229
Query: 388 QVPLNPYYPPGVPFQHFPAAPIN--HPMYKAPEIP-GHQQVPSEE-YPERPGQPECQHFV 443
+ Y G P Y+A +P G V E +PERP QPECQ ++
Sbjct: 230 RTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYM 289
Query: 444 KSGFCKFRMKCKYHHP--RXXXXXXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYN 501
K+G CKF CK+HHP R ++P +P+CT+Y RYG+CKFGP C ++
Sbjct: 290 KTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFD 349
Query: 502 HPF 504
HP
Sbjct: 350 HPM 352
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXXXXXX 468
NHP + + + EYP+R GQPECQ+++K+G CKF CK+HHPR
Sbjct: 49 FNHPADRKMAVAAARM--KGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATR 106
Query: 469 XXXXXXX--IKPDQPVCTYYGRYGVCKFGPACAYNHP 503
++P++ C YY R G CKFG C ++HP
Sbjct: 107 VQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHP 143
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 147/309 (47%), Gaps = 39/309 (12%)
Query: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
+ L +A + K E Q EC+YY G CKFG CK+ H K G A +V LN L
Sbjct: 109 RNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG--IAGRVQLNTL 166
Query: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKD------PQLEHENGDA--PQ 332
G PLRP EKEC YY++TG CKY CKFHHP+ N + P + H + A P
Sbjct: 167 GYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSV-HSSATAGPPY 225
Query: 333 QDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGY--HQVP 390
S + P S P R N PS A M+ PQG+ P WN Y +P
Sbjct: 226 TGTMASWAFPRGSFIPSPRWQN----------PSNYAPMIVPQGLVQVPSWNSYTGQMMP 275
Query: 391 LNP----YYPPGV-----PFQHFPAAPINHPM---YKAPEIPGHQQVPSEE--YPERPGQ 436
++ PG Q A+ N M Y++ P Q E +PERP Q
Sbjct: 276 VSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQ 335
Query: 437 PECQHFVKSGFCKFRMKCKYHHPRXXXXXX--XXXXXXXXXIKPDQPVCTYYGRYGVCKF 494
PECQ+++K+G CKF CK+HHPR ++P + +C +Y RYG+CKF
Sbjct: 336 PECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKF 395
Query: 495 GPACAYNHP 503
G C ++HP
Sbjct: 396 GANCKFDHP 404
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 403 HFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXX 462
H PAA M++ + G + YPER G+P+C +++++G C+F M C+++HP+
Sbjct: 50 HDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDR 109
Query: 463 XXXXXXXXXXXXX-IKPDQPVCTYYGRYGVCKFGPACAYNHP 503
+ QP C YY + G CKFGP C ++HP
Sbjct: 110 NLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHP 151
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXXXXXX 468
NHP + I + EYPER GQPECQ+++K+G CKF CK+HHPR
Sbjct: 103 FNHPQDRNLAIASARM--KGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGR 160
Query: 469 XXXXXXX--IKPDQPVCTYYGRYGVCKFGPACAYNHPFNFS 507
++P + C YY + G CK+G C ++HP F+
Sbjct: 161 VQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFN 201
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 137/294 (46%), Gaps = 43/294 (14%)
Query: 236 EGSSQEECKYYSTPGGCKFGKACKYLH--RDGKEGKTDAEKVDLNFLGLPLRPGEKECPY 293
E + Q C+YY G CKFG CKY H +DG V LN G P+R GEKEC Y
Sbjct: 107 ERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGA-----VLPVMLNNSGFPIRLGEKECSY 161
Query: 294 YMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASI--WPDQR 351
YM+TG CK+ T CKFHHP+ V P + P Q +S P AS+ W R
Sbjct: 162 YMKTGQCKFGTTCKFHHPEFGGVP-MTPGIY-----PPLQSPSIASPHPYASLANWQMGR 215
Query: 352 --TVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPI 409
V ++P S+GM+P QG P P +NP G Q+ A P+
Sbjct: 216 PPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYP-------ASVNPVVSGGAQ-QNVQAGPV 267
Query: 410 ---------NHPMYKAPEIP-----GHQQVPSEE--YPERPGQPECQHFVKSGFCKFRMK 453
+ Y P +P G +E +PERPGQP+CQ+++++G CKF
Sbjct: 268 YGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGAT 327
Query: 454 CKYHHPRXXXX--XXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYNHPFN 505
CKYHHPR ++P C YY + G C++G AC Y+HP
Sbjct: 328 CKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMG 381
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 421 GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXXXX-XXXXXXXXXIKPD 479
G + + +YPER GQP C++++K+G CKF CKYHHP+ I+
Sbjct: 96 GARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLG 155
Query: 480 QPVCTYYGRYGVCKFGPACAYNHP 503
+ C+YY + G CKFG C ++HP
Sbjct: 156 EKECSYYMKTGQCKFGTTCKFHHP 179
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 136/292 (46%), Gaps = 48/292 (16%)
Query: 240 QEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGS 299
Q C+YY G CKFG CKY H +EG A V LN G PLR GEK+C YY++TG
Sbjct: 104 QPVCEYYMKNGTCKFGSNCKYDHP--REGSVQA--VMLNSSGYPLRSGEKDCTYYVKTGH 159
Query: 300 CKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASI--WPDQRTVNEHH 357
CK+ + CKFHHP+ V+ E N P Q SSS P + W R
Sbjct: 160 CKFGSTCKFHHPEIGGVS------ETPNMYPPVQPQPISSSHPYQHLAGWQMGR------ 207
Query: 358 VPFIAPSPSYSAG---MLPPQGMYPPPEWN-------------GYHQVPLNPYYPPGVPF 401
P + P S M+ P + P WN G+ V P+Y G+
Sbjct: 208 -PPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFY--GLSH 264
Query: 402 QHFPAAPINHPMYKAP------EIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCK 455
Q P+A + + AP +Q P+ +P RPGQPECQ+++K+G CKF CK
Sbjct: 265 QG-PSAAVTYGSQYAPLSSSTMPSSSSKQEPA--FPARPGQPECQYYLKTGSCKFGSACK 321
Query: 456 YHHPRXXXX--XXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYNHPFN 505
YHHP+ ++P C YY ++G CKFGP C ++HP
Sbjct: 322 YHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMG 373
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 410 NHPMYKAPEIP---GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXXXX 466
NHP +A G + S EYPERPGQP C++++K+G CKF CKY HPR
Sbjct: 75 NHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA 134
Query: 467 XXXXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
++ + CTYY + G CKFG C ++HP
Sbjct: 135 VMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHP 171
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 104/250 (41%), Gaps = 69/250 (27%)
Query: 100 DSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARXXXXXXXXXXXXXXXXXXXXXXX 159
S P +P+RPGE DC +Y+ +C+FG CKF+HP
Sbjct: 97 SSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHP---------------------QWVP 135
Query: 160 XXXXPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVE 219
P+ ++ A EE SY P+ E D F G K + K +V
Sbjct: 136 EGGIPNWKEAANVEE--SY-PEQEGEPDCPFFMKTGKCKFGSKCK------FNHPKEKV- 185
Query: 220 PKELKVAKEKRKEFISEGS------SQEECKYYSTPGGCKFGKACKYLH-RDGK------ 266
L K I++ S S+ C +Y+ G CKF CK+ H +D +
Sbjct: 186 -NALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQN 244
Query: 267 --------EGKTD----------------AEKVDLNFLGLPLRPGEKECPYYMRTGSCKY 302
EG+TD A + N GLP+RPGE +CP+YM+ GSCK+
Sbjct: 245 EPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKF 304
Query: 303 ATNCKFHHPD 312
+ C+F+HPD
Sbjct: 305 GSTCRFNHPD 314
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 409 INHPMYKAPE--IPGHQQVPS--EEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRXXXX 464
+HP + PE IP ++ + E YPE+ G+P+C F+K+G CKF KCK++HP+
Sbjct: 128 FDHPQW-VPEGGIPNWKEAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVN 186
Query: 465 XXXX---------XXXXXXXIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
++P +P+C++Y + G CKF C +NHP
Sbjct: 187 ALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHP 234
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 107/305 (35%), Gaps = 48/305 (15%)
Query: 236 EGSSQEECKYYSTPGGCKFGKACKYLHRDGK-----EGKTDAEKVDLNFLGLPLRPGEKE 290
E + +C ++ G CKFG CK+ H K G T+ + + + LP+RP E
Sbjct: 154 EQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPL 213
Query: 291 CPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQ 350
C +Y +TG CK+ CKF+HP + S + E + D+ ++ +A +
Sbjct: 214 CSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPV 273
Query: 351 RTVNEHH------------VPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPG 398
E + PF S G +N ++ LN P G
Sbjct: 274 AAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGST--------CRFNHPDRLVLNFPLPLG 325
Query: 399 VPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMK----- 453
Q P + + + + P PG + C F MK
Sbjct: 326 ---QTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCK 382
Query: 454 ----CKYHHPRXXXX-----------XXXXXXXXXXXIKPDQPVCTYYGRYGVCKFGPAC 498
CK+HHP + D VC +Y + GVCKFG C
Sbjct: 383 FADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQC 442
Query: 499 AYNHP 503
++HP
Sbjct: 443 KFDHP 447
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 60/134 (44%), Gaps = 28/134 (20%)
Query: 242 ECKYYSTPGGCKFGKACKY-------------------LHRDGKEGKTDAEKVDLNFLGL 282
+C YY G CKFG C++ H EGK+ E+V LN LGL
Sbjct: 95 DCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGL 154
Query: 283 PLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQP 342
PLRPG C YYM G CK+ TNCKF HPDP + +HE + SSQ
Sbjct: 155 PLRPGTGLCSYYMNRGICKFGTNCKFDHPDPGS--------DHEKW-VVSSNANQVSSQV 205
Query: 343 NASIWPDQRTVNEH 356
N D NEH
Sbjct: 206 NIYSVLDHGESNEH 219
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 417 PEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHH--PRXXXXXXXXXXXXXX 474
P + G + E++P RPG+P+C ++VK G CKF + C Y+H PR
Sbjct: 28 PPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQF 87
Query: 475 XIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
+P +P C+YY ++G CKFG C +NHP
Sbjct: 88 PRRPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 31/33 (93%)
Query: 104 RFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPAR 136
+FPRRPGEPDC+YYVKFGSC+FGM C+FNHP R
Sbjct: 86 QFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPR 118
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 66/138 (47%), Gaps = 27/138 (19%)
Query: 240 QEECKYYSTPGGCKFGKACKY------------------LHRDGKEGKTDAEKVDLNFLG 281
+ +C +Y G CK+G C++ H EGK++AE V LNFLG
Sbjct: 123 EHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLG 182
Query: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQ 341
LPLRPG C YYM G CK+ +NCKFHHP+ + HE D Q Q SS
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGS--------GHEKWDGSLQTNQISSGV 234
Query: 342 PNASIWPDQRTVNEHHVP 359
S+ D +NE VP
Sbjct: 235 NIYSVL-DHGELNEQPVP 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,344,395
Number of extensions: 891579
Number of successful extensions: 2590
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2484
Number of HSP's successfully gapped: 33
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)