Os01g0258700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0258700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, CCCH-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.22 | 0.171 | 11.6 | -0.179 | 0.338 | -0.441 | 0.0639 | 0.885 | 0.112 | 3.24 | 25.23 | 106 | -- | -- |
| 13.46 | 0.171 | 11.6 | -0.269 | 0.339 | -0.361 | -0.0286 | -- | 0.107 | 3.02 | 24.22 | 160 | -- | -- |
| 13.22 | 0.169 | 11.6 | -0.192 | 0.344 | -0.451 | -- | 0.886 | 0.0984 | 3.27 | 25.83 | 104 | -- | -- |
| 13.38 | 0.17 | 11.6 | -0.287 | 0.365 | -0.369 | -- | -- | 0.0691 | 2.97 | 26.38 | 204 | -- | -- |
| 17.11 | 0.193 | 11.6 | -0.0731 | -- | -0.739 | -- | 1.11 | 0.183 | -- | 24.2 | 120 | -- | -- |
| 15.56 | 0.185 | 11.6 | -0.34 | 0.496 | -- | 0.0732 | -- | 0.0601 | 3.4 | -- | -- | -- | -- |
| 15.58 | 0.185 | 11.6 | -0.341 | 0.496 | -- | -- | -- | 0.0597 | 3.4 | -- | -- | -- | -- |
| 17.73 | 0.196 | 11.6 | -0.212 | -- | -0.669 | -- | -- | 0.143 | -- | 24.2 | 106 | -- | -- |
| 15.46 | 0.183 | 11.6 | -- | 0.321 | -0.427 | -- | -- | 0.121 | 2.94 | 25.11 | 159 | -- | -- |
| 29.43 | 0.253 | 11.6 | -0.32 | -- | -- | -- | -- | 0.0728 | -- | -- | -- | -- | -- |
| 18.65 | 0.202 | 11.6 | -- | 0.49 | -- | -- | -- | 0.0977 | 3.4 | -- | -- | -- | -- |
| 18.93 | 0.203 | 11.6 | -- | -- | -0.698 | -- | -- | 0.17 | -- | 24.1 | 105 | -- | -- |
| 32.14 | 0.265 | 11.6 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 5 | 11.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 23 | 12.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 71 | 12.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 82 | 12.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 102 | 12.59 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 172 | 12.79 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 2 |
| 222 | 12.87 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 4 |
| 244 | 12.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 311 | 12.99 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 369 | 13.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 472 | 13.12 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 544 | 13.17 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 545 | 13.17 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 558 | 13.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 581 | 13.19 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 601 | 13.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 602 | 13.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 603 | 13.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 641 | 13.22 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |
| 664 | 13.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 668 | 13.23 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 701 | 13.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 706 | 13.25 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 721 | 13.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 735 | 13.26 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 9 |
| 760 | 13.27 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 12 |
| 825 | 13.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 830 | 13.30 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 21 |
| 831 | 13.30 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 918 | 13.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |