BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0258700 Os01g0258700|AK111903
(476 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0258700 Zinc finger, CCCH-type domain containing protein 870 0.0
Os01g0257400 Zinc finger, CCCH-type domain containing protein 521 e-148
Os11g0472000 Zinc finger, CCCH-type domain containing protein 289 3e-78
Os01g0917400 Zinc finger, CCCH-type domain containing protein 285 4e-77
Os12g0405100 Similar to Floral homeotic protein HUA1 276 2e-74
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 147 1e-35
Os01g0616400 Similar to Floral homeotic protein HUA1 136 4e-32
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 114 1e-25
Os06g0519400 Zinc finger, CCCH-type domain containing protein 108 1e-23
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/465 (92%), Positives = 431/465 (92%)
Query: 1 MEQPHXXXXXXXXXXXXXXXSPDTGLEGPMWRMGLXXXXXXXXXXXXXXXXXXXRLPERP 60
MEQPH SPDTGLEGPMWRMGL RLPERP
Sbjct: 1 MEQPHAAAAAAGGGEGEGGASPDTGLEGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERP 60
Query: 61 GEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKT 120
GEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKT
Sbjct: 61 GEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKT 120
Query: 121 GTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPE 180
GTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPE
Sbjct: 121 GTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPE 180
Query: 181 FGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPL 240
FGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPL
Sbjct: 181 FGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPL 240
Query: 241 QGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQ 300
QGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQ
Sbjct: 241 QGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQ 300
Query: 301 EHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCA 360
EHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCA
Sbjct: 301 EHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCA 360
Query: 361 YYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRP 420
YYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRP
Sbjct: 361 YYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRP 420
Query: 421 EYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTT 465
EYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTT
Sbjct: 421 EYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTT 465
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 256/444 (57%), Positives = 321/444 (72%), Gaps = 9/444 (2%)
Query: 21 SPDTGLEGPMWRMGLXXXXXXXXXXXXXXXXXXXRLPERPGEEDCVYYLRTGACGFGDRC 80
S DTGLE MWRM RLPERPGE DCVYYLRTGACG+G+ C
Sbjct: 18 STDTGLEESMWRM-----GLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENC 72
Query: 81 RYNHPRDRGGTE-FGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGA 139
RYNHPRDR GG + + +YPER GQP+CEYYMK GTCKFG+NCKY HP+ +G+
Sbjct: 73 RYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPR-EGS 131
Query: 140 VLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSI 199
V VMLN+SG+P+R GEK+C+YY+KTG CKFG+TCKFHHPE GGV TP +YPP+Q I
Sbjct: 132 VQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPI 191
Query: 200 ASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQ 259
+S HPY LA WQMGRPPV+PGS++ GSY PMML S ++P+QGW+PY + VN V S G
Sbjct: 192 SSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGH 251
Query: 260 QNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRT 319
Q VQAGP YG+ H G S+ + YG Y P +SST SS+++QE FP RPGQP+CQYY++T
Sbjct: 252 QTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKT 311
Query: 320 GDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
G CKFG+ CKYHHP+ L+ PKS M++ L LPLRPG+QPCAYY Q+G+C++G CK+DHP
Sbjct: 312 GSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHP 371
Query: 380 MGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAA 439
MGTL YSPSA ++D+PIAPYP+ +++A +AP S S DLRPEY+ TK+ S NQ SP
Sbjct: 372 MGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTKEFSANQSASPGTT 431
Query: 440 SEPVGSILPKGVFPADTMMRAQTN 463
P G++L + ++R QT+
Sbjct: 432 CGPAGAML--KAYAPHMLIRPQTS 453
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 21/388 (5%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
PER GE DC YY+RTG C FG C++NHP DR + +YP+R GQP C+Y
Sbjct: 24 PERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG----EYPQRIGQPECQY 79
Query: 117 YMKTGTCKFGTNCKYHHPKQDGAVLP-VMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175
Y+KTGTCKFG CK+HHP++ A+ V LN G+P+R EKEC+YY++TGQCKFG+TCK
Sbjct: 80 YLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCK 139
Query: 176 FHHPEFGG--VPMTPGIYPPLQSPSIASPHPY-ASLANWQMGRPPVVPGS-YIPG--SYT 229
FHHP+ V + +Y P QS + S H Y ++ NW + R S PG SY
Sbjct: 140 FHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSASFIASPRWPGHSSYA 199
Query: 230 PMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYA 289
+++ G++ + GW+PY A + S Q+ Y H + + G + Y
Sbjct: 200 QVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSETPNMGDQGMFSSYQ 259
Query: 290 SSTGQSS--NNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNS 347
+ + Q+E FPERP QP+CQ+YM+TGDCKFGA CK+HHP+E P ++S
Sbjct: 260 AGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSS 319
Query: 348 LCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIA 407
L LPLRPG C +Y++ G C++G CK+DHPMGT+ Y + P D+ +
Sbjct: 320 LGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVS--------ARR 371
Query: 408 TLAPSSPSPDLRPEYISTKDQSVNQVTS 435
LAP ++ P+ +S + + + S
Sbjct: 372 MLAPVPAHSEVSPDNVSGRSRRITHSDS 399
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 56/121 (46%), Gaps = 45/121 (37%)
Query: 304 FPERPGQPDCQYYMR--------------------------------------------- 318
+PER G+PDC YYMR
Sbjct: 23 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLK 82
Query: 319 TGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH 378
TG CKFGATCK+HHPRE +A + +N+L PLRP + CAYY + G C++G CK+ H
Sbjct: 83 TGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHH 142
Query: 379 P 379
P
Sbjct: 143 P 143
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 206/343 (60%), Gaps = 19/343 (5%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
PER GE DC YYLRTG C FG CR+NHP+DR + +YPER GQP C+Y
Sbjct: 78 PERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG----EYPERMGQPECQY 133
Query: 117 YMKTGTCKFGTNCKYHHPKQDGAVL-PVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175
Y+KTGTCKFG CK+HHP++ + V LN G+P+R EKEC+YY+KTGQCK+G TCK
Sbjct: 134 YLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCK 193
Query: 176 FHHPE-FGGVPMTPG--IYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYI--PGSYTP 230
FHHPE F + + G IYP + S + A P ++A+W R +P P +Y P
Sbjct: 194 FHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAP 253
Query: 231 MMLSSGMIPLQGWSPYPASVNPVVSGGAQ-QNVQAGPVYGMGHHGSSSTIAYGGPYVPYA 289
M++ G++ + W+ Y + PV S ++ Q+ A YG +S G PY
Sbjct: 254 MIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASA-GNQGMLSPYR 312
Query: 290 SSTGQSSNN--QQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNS 347
SS+ Q+E+ FPERP QP+CQYYM+TGDCKFGA CK+HHPR S P +++
Sbjct: 313 SSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSP 372
Query: 348 LCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PMGTLGY 385
+ LPLRPG + C +Y++ G C++G CK+DH PMG Y
Sbjct: 373 VGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYAY 415
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 208/363 (57%), Gaps = 30/363 (8%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAAL--DYPERAGQPIC 114
PER GE DC YY+RTG C FG C++NHP +R A AA + +YP R GQP C
Sbjct: 64 PERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKL------AVAAARMNGEYPYRVGQPEC 117
Query: 115 EYYMKTGTCKFGTNCKYHHPKQDGAVLP-VMLNNSGFPIRLGEKECSYYMKTGQCKFGTT 173
+YY+KTGTCKFG CK+HHP++ A+ V LN G+P+R EKEC+YY++TGQCKF +T
Sbjct: 118 QYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFAST 177
Query: 174 CKFHHPEFGG--VPMTPGIYPPLQSPSIASPHPY-ASLANWQMGRPPVVPGS-YIPG--S 227
CKFHHP+ V + +Y P QS + H Y ++ NW + R S PG
Sbjct: 178 CKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWTLSRSASFIASPRWPGHSG 237
Query: 228 YTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYG--------MGHHGSSSTI 279
Y +++ G++ + GW+PY A + Q+ YG MG HG +
Sbjct: 238 YAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYGSRQSETGGMGDHGMYQS- 296
Query: 280 AYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAP 339
Y G VP T Q N FPERP QP+CQ+YM+TGDCKFGA CK+HHP+E P
Sbjct: 297 -YQGGSVPVGVYTVQGENI-----FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVP 350
Query: 340 KSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAP 399
+NSL LPLRPG C +Y++ G C++G CK+DHPMGTL Y + P D+
Sbjct: 351 APNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSMH 410
Query: 400 YPI 402
Y +
Sbjct: 411 YQL 413
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 45/121 (37%)
Query: 304 FPERPGQPDCQYYMR--------------------------------------------- 318
+PER G+PDC YYMR
Sbjct: 63 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNGEYPYRVGQPECQYYLK 122
Query: 319 TGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH 378
TG CKFGATCK+HHPRE +A + +N L P+RP + CAYY + G C++ CK+ H
Sbjct: 123 TGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHH 182
Query: 379 P 379
P
Sbjct: 183 P 183
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 152/312 (48%), Gaps = 48/312 (15%)
Query: 107 ERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGA-----VLPVMLNNSGFPIRLGEKECSY 161
E + Q C+YY G CKFG CKY H +DG V LN G P+R GEKEC Y
Sbjct: 236 EGSSQEECKYYSTPGGCKFGKACKYLH--RDGKEGKTDAEKVDLNFLGLPLRPGEKECPY 293
Query: 162 YMKTGQCKFGTTCKFHHPEFGGVP-MTPGIY-----PPLQSPSIASPHPYASLANWQMGR 215
YM+TG CK+ T CKFHHP+ V P + P Q +S P AS+ W R
Sbjct: 294 YMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASI--WPDQR 351
Query: 216 PPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYP-------ASVNPVVSGGAQ-QNVQAGPV 267
V ++P S+GM+P QG P P +NP G Q+ A P+
Sbjct: 352 --TVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPI 409
Query: 268 YGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGAT 327
+ Y P +P G +E +PERPGQP+CQ+++++G CKF
Sbjct: 410 ---------NHPMYKAPEIP-----GHQQVPSEE--YPERPGQPECQHFVKSGFCKFRMK 453
Query: 328 CKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSP 387
CKYHHPR P ++ L LP++P C YY + G C++G AC Y+HP +SP
Sbjct: 454 CKYHHPRSPVPPAGA--LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP---FNFSP 508
Query: 388 SALPLSDMPIAP 399
+P + P+ P
Sbjct: 509 --VPAAGPPLLP 518
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 96 GARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQ----DGAVLPVMLNNSGFP 151
G + + +YPER GQP C++++K+G CKF CKYHHP+ GA+ P+ G P
Sbjct: 421 GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPL-----GLP 475
Query: 152 IRLGEKECSYYMKTGQCKFGTTCKFHHP------EFGGVPMTPGIYP 192
I+ + C+YY + G CKFG C ++HP G P+ P YP
Sbjct: 476 IKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYP 522
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
PERPG+ +C +++++G C F +C+Y+HPR A + L P + QP+C Y
Sbjct: 431 PERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPP-----AGALSPLGLPIKPDQPVCTY 485
Query: 117 YMKTGTCKFGTNCKYHHP 134
Y + G CKFG C Y+HP
Sbjct: 486 YGRYGVCKFGPACAYNHP 503
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 162/373 (43%), Gaps = 78/373 (20%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPR--DRGGTEFGGGARNAAALDYPERAGQPIC 114
P+RPGE+DC +Y+ T C FG C+++HP+ GG A N YPE+ G+P C
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEE-SYPEQEGEPDC 161
Query: 115 EYYMKTGTCKFGTNCKYHHPKQDGAVLP--------VMLNNSGFPIRLGEKECSYYMKTG 166
++MKTG CKFG+ CK++HPK+ L ++ ++S P+R E CS+Y KTG
Sbjct: 162 PFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTG 221
Query: 167 QCKFGTTCKFHHPEFGGVPMTPG-------------IYPPLQSPSIASPHPYASLANWQM 213
+CKF CKF+HP+ +P + I S S P A+ +
Sbjct: 222 KCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNS 281
Query: 214 GRPPVVPGSYIPGSYTPM----------------MLSSGMIPL-QGWSPYPASVNPVVSG 256
P+ PG Y M ++ + +PL Q P P S+
Sbjct: 282 KGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESM------ 335
Query: 257 GAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQS-SNNQQEHGFPERPGQPDCQY 315
N A + G H + + G V Y G + + + GF C++
Sbjct: 336 --LLNSSANFMQGFDFHAAHMPVGPGP--VTYPQRPGATVCDFYMKTGF--------CKF 383
Query: 316 YMRTGDCKFGATCKYHHPRELSAP---------KSGYMVNSLCLPLRPGAQPCAYYAQNG 366
R CKF HHP + SAP + + LP R A CA+Y + G
Sbjct: 384 ADR---CKF------HHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTG 434
Query: 367 YCRYGVACKYDHP 379
C++G+ CK+DHP
Sbjct: 435 VCKFGMQCKFDHP 447
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 141/323 (43%), Gaps = 60/323 (18%)
Query: 105 YPERAGQPICEYYMKTGTCKFGTNCKYHHPKQ--DGAV---LPVMLNNSGFPIRLGEKEC 159
YP+R G+ C +YM T TCKFG +CK+ HP+ +G + +P + GE +C
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPDC 161
Query: 160 SYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVV 219
++MKTG+CKFG+ CKF+HP+ L S + H A + PV
Sbjct: 162 PFFMKTGKCKFGSKCKFNHPK--------EKVNALASGNTNDKHLIADSSIL-----PVR 208
Query: 220 PGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTI 279
P + Y +G + + + + + A V G GS++
Sbjct: 209 PSEPLCSFYA----KTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADS 264
Query: 280 AYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELS-- 337
P A++ Q N++ G P RPG+ DC +YM+ G CKFG+TC+++HP L
Sbjct: 265 VSAKMQTPVAAA--QEFNSK---GLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLN 319
Query: 338 -----------APKSGYMVNS--------------------LCLPLRPGAQPCAYYAQNG 366
P+S + +S + P RPGA C +Y + G
Sbjct: 320 FPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTG 379
Query: 367 YCRYGVACKYDHPMGTLGYSPSA 389
+C++ CK+ HP+ PSA
Sbjct: 380 FCKFADRCKFHHPIDRSAPDPSA 402
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 78/165 (47%), Gaps = 42/165 (25%)
Query: 56 LPERPGEEDCVYYLRTGACGFGDRCRYNHPRDR-----------------------GGTE 92
LP RPGE DC +Y++ G+C FG CR+NHP DR
Sbjct: 284 LPMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLVLNFPLPLGQTILPTPESMLLNSSAN 342
Query: 93 FGGGARNAAA--------LDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLP-- 142
F G AA + YP+R G +C++YMKTG CKF CK+HHP A P
Sbjct: 343 FMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSA 402
Query: 143 --------VMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHP 179
V L +G P R C++YMKTG CKFG CKF HP
Sbjct: 403 NWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 447
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGG---ARNAAALDY---PERAG 110
P+RPG C +Y++TG C F DRC+++HP DR + A + L P R
Sbjct: 364 PQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRRED 423
Query: 111 QPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSG 149
+C +YMKTG CKFG CK+ HP A+ V +NSG
Sbjct: 424 AVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKV--SNSG 460
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 77/146 (52%), Gaps = 25/146 (17%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
P RPGE DC YY++ G+C FG C YNHP R G A +P R G+P C Y
Sbjct: 42 PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQ---HGADDKKPAEQFPRRPGEPDCSY 98
Query: 117 YMKTGTCKFGTNCKYHHP-------KQD---------------GAVLPVMLNNSGFPIRL 154
Y+K G+CKFG NC+++HP +Q+ V V LN G P+R
Sbjct: 99 YVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRP 158
Query: 155 GEKECSYYMKTGQCKFGTTCKFHHPE 180
G CSYYM G CKFGT CKF HP+
Sbjct: 159 GTGLCSYYMNRGICKFGTNCKFDHPD 184
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 21/97 (21%)
Query: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSA-PKSGYM------------------ 344
FP RPG+PDC YY++ G CKFG C+++HP + P+ Y
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQ 146
Query: 345 --VNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
+N L LPLRPG C+YY G C++G CK+DHP
Sbjct: 147 VKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 95 GGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPK---QDGAVLPVMLNNSGFP 151
G +P R G+P C YY+K G+CKFG +C Y+HP Q GA FP
Sbjct: 31 AGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGA--DDKKPAEQFP 88
Query: 152 IRLGEKECSYYMKTGQCKFGTTCKFHHP 179
R GE +CSYY+K G CKFG C+F+HP
Sbjct: 89 RRPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 293 GQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPL 352
G++ +++H P RPG+PDC YY++ G CKFG +C Y+HP + + P
Sbjct: 32 GKTKKVEEQH--PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPR 89
Query: 353 RPGAQPCAYYAQNGYCRYGVACKYDHP 379
RPG C+YY + G C++G+ C+++HP
Sbjct: 90 RPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 55 RLPERPGEEDCVYYLRTGACGFGDRCRYNHP--------------------RDRGGTEFG 94
+ P RPGE DC YY++ G+C FG CR+NHP G ++
Sbjct: 86 QFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVE 145
Query: 95 GGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHP 134
N L P R G +C YYM G CKFGTNCK+ HP
Sbjct: 146 QVKLNVLGL--PLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 91/185 (49%), Gaps = 34/185 (18%)
Query: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
P RPG DC YY+ G+C FG RC YNHP G L++P+R G+ C +
Sbjct: 77 PRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAG--------GCDKLEHPQRPGEHDCLH 128
Query: 117 YMKTGTCKFGTNCKYHHPK----QDGAVLP-----------------VMLNNSGFPIRLG 155
Y++ G CK+G NC+++HP Q P V LN G P+R G
Sbjct: 129 YLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPG 188
Query: 156 EKECSYYMKTGQCKFGTTCKFHHPEFG-GVPMTPGIYPPLQSPSIAS-PHPYASLANWQM 213
CSYYM G CKFG+ CKFHHP G G G LQ+ I+S + Y+ L + ++
Sbjct: 189 TGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDG---SLQTNQISSGVNIYSVLDHGEL 245
Query: 214 GRPPV 218
PV
Sbjct: 246 NEQPV 250
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
+P RPG PDC YY+ G CKFG C Y+HP K + L P RPG C +Y
Sbjct: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHP-----AKHAGGCDKLEHPQRPGEHDCLHYL 130
Query: 364 QNGYCRYGVACKYDHP 379
+ G C+YG+ C+++HP
Sbjct: 131 RFGRCKYGMNCRFNHP 146
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 298 NQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHP--------------------RELS 337
++ EH P+RPG+ DC +Y+R G CK+G C+++HP E
Sbjct: 113 DKLEH--PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGK 170
Query: 338 APKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGY 385
+ +N L LPLRPG C+YY G C++G CK+ HP G+
Sbjct: 171 SEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGH 218
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 104 DYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYM 163
+YP R G P C YY++ G+CKFG C Y+HP + + + P R GE +C +Y+
Sbjct: 75 EYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEH----PQRPGEHDCLHYL 130
Query: 164 KTGQCKFGTTCKFHHP 179
+ G+CK+G C+F+HP
Sbjct: 131 RFGRCKYGMNCRFNHP 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,953,035
Number of extensions: 975045
Number of successful extensions: 3320
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 3167
Number of HSP's successfully gapped: 33
Length of query: 476
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 371
Effective length of database: 11,553,331
Effective search space: 4286285801
Effective search space used: 4286285801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)