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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0520600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc finger CCCH type domain containing protein ZFN-like 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0328) R2 : 0.000202
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0209 (0.069) R2dN8 : 0.000261 R2N8 : 0.000202
σ : 0.617
deviance : 174.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.54 0.595 3 -0.00911 0.306 0.281 0.123 1.84 0.0145 8.81 998.5 9981 -- --
160.61 0.59 3.01 -0.133 0.31 0.586 0.114 -- 0.0483 8.84 998.8 13524 -- --
160.59 0.59 3 -0.00422 0.306 0.274 -- 1.88 0.0146 8.9 998.5 9970 -- --
160.67 0.59 3.01 -0.12 0.303 0.578 -- -- 0.0465 8.84 998.7 13505 -- --
165.92 0.6 3 0.00554 -- 0.266 -- 1.88 0.0173 -- 998.4 9981 -- --
169.25 0.61 3.02 0.0111 0.306 -- 0.111 -- -0.0215 8.91 -- -- -- --
169.29 0.609 3.02 0.0152 0.305 -- -- -- -0.0212 9 -- -- -- --
165.91 0.6 3.02 -0.125 -- 0.578 -- -- 0.0464 -- 998.6 13491 -- --
161.04 0.591 3.01 -- 0.302 0.552 -- -- 0.0519 8.85 998.7 13505 -- --
174.62 0.617 3.03 0.0148 -- -- -- -- -0.0193 -- -- -- -- --
169.3 0.609 3.02 -- 0.305 -- -- -- -0.0229 9 -- -- -- --
166.27 0.601 3.01 -- -- 0.554 -- -- 0.059 -- 998.7 13505 -- --
174.62 0.617 3.03 -- -- -- -- -- -0.0209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.53 precipitation 0.1 1440 < th dose independent rect. 16 2
2 150.53 precipitation 0.1 1440 < th dose dependent rect. 16 2
3 150.56 precipitation 0.1 1440 > th dose independent rect. 16 2
9 151.72 precipitation 0.1 1440 > th dose dependent rect. 15 3
19 152.82 atmosphere 1000.0 1440 < th dose independent rect. 8 1
22 152.96 temperature 30.0 90 < th dose dependent rect. 10 1
23 153.09 atmosphere 1000.0 1440 > th dose independent rect. 9 1
28 153.38 atmosphere 1000.0 1440 < th dose dependent rect. 9 1
33 153.56 precipitation 0.1 1440 > th dose dependent rect. 6 12
35 153.58 precipitation 0.1 1440 > th dose dependent rect. 8 10
57 154.25 atmosphere 995.0 30 > th dose dependent rect. 11 1
88 154.85 precipitation 0.1 1440 < th dose independent rect. 8 10
89 154.85 precipitation 0.1 1440 < th dose independent rect. 6 12
90 154.85 precipitation 0.1 1440 < th dose dependent rect. 8 10
91 154.85 precipitation 0.1 1440 < th dose dependent rect. 6 12
94 154.97 precipitation 0.1 1440 > th dose independent rect. 8 10
120 155.25 precipitation 0.1 1440 > th dose independent rect. 6 12
130 155.45 temperature 30.0 270 < th dose dependent rect. 8 4
148 155.61 atmosphere 1005.0 10 > th dose independent rect. 11 1
182 156.16 temperature 30.0 30 < th dose independent rect. 11 1
186 156.18 temperature 10.0 10 > th dose dependent rect. 12 23
193 156.27 atmosphere 995.0 14400 > th dose independent rect. 12 1
207 156.50 wind 9.0 4320 > th dose dependent rect. 17 1
212 156.59 radiation 10.0 10 > th dose independent rect. 11 1
227 156.76 wind 9.0 4320 > th dose dependent rect. 17 3
245 156.95 temperature 10.0 30 > th dose dependent rect. 5 23
247 156.96 temperature 15.0 720 > th dose dependent rect. 5 2
258 157.06 temperature 10.0 1440 > th dose independent rect. 12 1
262 157.06 atmosphere 995.0 1440 > th dose independent rect. 12 1
263 157.06 temperature 10.0 1440 > th dose independent rect. 13 23
270 157.09 temperature 10.0 30 > th dose independent rect. 11 1
272 157.09 atmosphere 995.0 30 > th dose independent rect. 11 1
273 157.09 atmosphere 1015.0 30 < th dose independent rect. 11 1
274 157.09 precipitation 0.1 30 < th dose independent rect. 11 1
275 157.09 temperature 10.0 30 > th dose independent rect. 12 23
276 157.09 precipitation 0.1 30 < th dose dependent rect. 11 1
279 157.10 wind 9.0 30 < th dose independent rect. 12 23
301 157.19 temperature 30.0 270 < th dose dependent rect. 8 10
319 157.28 atmosphere 995.0 14400 > th dose independent rect. 10 3
321 157.30 temperature 30.0 90 < th dose dependent rect. 10 9
341 157.44 precipitation 0.1 1440 > th dose dependent rect. 16 11
342 157.45 wind 9.0 30 < th dose independent rect. 11 1
350 157.51 wind 1.0 30 > th dose independent rect. 11 1
355 157.54 precipitation 0.1 30 < th dose independent rect. 12 23
357 157.54 precipitation 0.1 30 < th dose dependent rect. 12 23
358 157.55 humidity 50.0 30 > th dose independent rect. 11 1
360 157.55 atmosphere 1000.0 1440 < th dose dependent rect. 11 1
364 157.56 atmosphere 995.0 30 > th dose independent rect. 12 23
379 157.63 wind 9.0 4320 > th dose dependent rect. 17 11
380 157.64 temperature 30.0 90 < th dose dependent rect. 10 7
382 157.65 wind 9.0 4320 > th dose dependent rect. 17 6
410 157.77 wind 9.0 4320 > th dose independent rect. 17 1
411 157.78 wind 9.0 4320 < th dose independent rect. 17 1
420 157.83 temperature 25.0 270 < th dose independent rect. 8 4
425 157.85 temperature 15.0 90 > th dose dependent rect. 5 14
458 158.02 temperature 15.0 10 > th dose dependent rect. 6 14
463 158.05 temperature 30.0 90 < th dose dependent rect. 10 11
494 158.25 radiation 1.0 10 > th dose independent rect. 12 23
509 158.30 temperature 10.0 270 > th dose dependent rect. 5 12
511 158.32 atmosphere 1015.0 30 < th dose independent rect. 12 23
517 158.35 wind 9.0 4320 > th dose independent rect. 17 3
521 158.36 temperature 30.0 90 < th dose dependent rect. 10 19
532 158.41 wind 9.0 4320 < th dose independent rect. 17 3
545 158.43 atmosphere 995.0 90 > th dose dependent rect. 3 9
592 158.60 wind 1.0 90 > th dose dependent rect. 10 2
594 158.61 wind 9.0 4320 > th dose independent rect. 17 11
598 158.64 wind 9.0 4320 > th dose independent rect. 17 6
599 158.64 wind 9.0 4320 > th dose independent rect. 17 9
627 158.72 humidity 50.0 4320 > th dose dependent rect. 21 1
629 158.72 temperature 15.0 90 > th dose dependent rect. 5 18
633 158.74 wind 9.0 4320 < th dose independent rect. 17 5
658 158.82 wind 9.0 4320 > th dose dependent rect. 16 19
664 158.85 atmosphere 995.0 10 > th dose dependent rect. 11 19
666 158.86 wind 9.0 4320 < th dose independent rect. 17 9
702 158.93 humidity 50.0 30 > th dose independent rect. 12 23
729 158.99 wind 9.0 4320 < th dose independent rect. 17 11
764 159.06 atmosphere 995.0 270 > th dose dependent rect. 24 12
771 159.07 humidity 90.0 30 < th dose independent rect. 11 1
824 159.19 temperature 20.0 720 < th dose dependent rect. 21 1
830 159.21 precipitation 0.1 1440 < th dose independent rect. 16 11
833 159.21 precipitation 0.1 1440 < th dose dependent rect. 16 11
835 159.22 precipitation 0.1 1440 > th dose dependent sin 19 NA
843 159.24 precipitation 0.1 1440 < th dose independent rect. 12 1
847 159.24 precipitation 0.1 1440 < th dose dependent rect. 12 1
860 159.25 temperature 30.0 270 < th dose dependent rect. 7 22
884 159.31 precipitation 0.1 1440 > th dose independent rect. 16 11
897 159.35 temperature 25.0 10 > th dose dependent rect. 1 5
899 159.36 atmosphere 1000.0 14400 < th dose independent rect. 12 1
985 159.51 wind 1.0 10 > th dose independent rect. 11 19
993 159.52 wind 9.0 4320 < th dose independent rect. 17 18