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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0519400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0249) R2 : 0.000307
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0196 (0.0524) R2dN8 : 0.000396 R2N8 : 0.000307
σ : 0.469
deviance : 100.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.38 0.452 3.01 0.114 0.0657 4.72 -0.0763 16.5 0.034 8.35 995 5656 -- --
97.86 0.461 2.97 -0.052 0.062 0.565 -0.0694 -- 0.0391 7.65 997.7 5889 -- --
92.28 0.447 3.03 0.151 0.0484 5.89 -- 20.6 0.0167 7.92 995 6070 -- --
97.86 0.461 2.97 -0.0538 0.0631 0.55 -- -- 0.0359 8.03 997.7 5853 -- --
92.46 0.448 3.03 0.162 -- 5.96 -- 20.7 0.0343 -- 995 6089 -- --
100.64 0.47 2.97 -0.0452 0.0701 -- -0.0106 -- 0.0141 8.92 -- -- -- --
100.64 0.47 2.97 -0.0455 0.07 -- -- -- 0.0141 9.01 -- -- -- --
98.07 0.461 2.97 -0.0518 -- 0.561 -- -- 0.0373 -- 997.6 5832 -- --
97.91 0.461 2.97 -- 0.0641 0.543 -- -- 0.0426 8.67 997.6 5843 -- --
100.92 0.469 2.97 -0.0456 -- -- -- -- 0.0146 -- -- -- -- --
100.69 0.469 2.97 -- 0.0699 -- -- -- 0.0192 9.05 -- -- -- --
98.14 0.461 2.97 -- -- 0.559 -- -- 0.0442 -- 997.6 5832 -- --
100.97 0.469 2.97 -- -- -- -- -- 0.0196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.26 atmosphere 995.0 4320 > th dose independent rect. 4 10
2 86.34 atmosphere 995.0 4320 < th dose dependent rect. 14 1
22 86.66 atmosphere 995.0 4320 < th dose independent rect. 14 1
31 86.68 radiation 1.0 4320 < th dose dependent rect. 23 1
34 87.00 atmosphere 995.0 4320 > th dose independent rect. 12 4
36 87.09 atmosphere 995.0 4320 > th dose independent rect. 10 6
80 87.76 atmosphere 995.0 4320 > th dose independent rect. 14 2
155 89.26 atmosphere 995.0 4320 > th dose independent rect. 12 9
159 89.43 atmosphere 995.0 4320 > th dose independent rect. 10 11
228 90.45 precipitation 0.1 4320 > th dose dependent rect. 20 1
231 90.58 radiation 1.0 4320 < th dose dependent rect. 23 3
238 90.78 atmosphere 995.0 4320 > th dose independent rect. 14 7
242 90.93 radiation 1.0 4320 < th dose dependent rect. 19 7
273 91.99 wind 7.0 4320 > th dose independent rect. 6 1
274 92.01 wind 7.0 4320 > th dose dependent rect. 6 1
285 92.34 atmosphere 1000.0 10 < th dose independent rect. 11 1
305 93.04 atmosphere 1000.0 90 > th dose independent rect. 3 22
306 93.04 atmosphere 1000.0 10 > th dose independent rect. 3 23
307 93.05 temperature 25.0 30 < th dose dependent rect. 2 1
312 93.27 radiation 20.0 10 < th dose independent rect. 12 1
314 93.35 wind 7.0 4320 < th dose independent rect. 6 1
317 93.45 atmosphere 1005.0 10 > th dose dependent rect. 1 2
322 93.61 wind 3.0 10 < th dose independent rect. 1 2
327 93.68 wind 3.0 90 < th dose independent rect. 1 2
333 93.80 wind 9.0 10 < th dose independent rect. 3 23
336 93.90 atmosphere 1010.0 10 < th dose dependent rect. 2 1
343 94.16 wind 5.0 90 < th dose dependent rect. 1 2
347 94.24 atmosphere 995.0 4320 > th dose independent sin 7 NA
353 94.29 temperature 10.0 10 > th dose independent rect. 2 1
355 94.29 temperature 30.0 10 < th dose independent rect. 2 1
356 94.29 humidity 50.0 10 > th dose independent rect. 2 1
359 94.29 atmosphere 995.0 10 > th dose independent rect. 2 1
361 94.29 atmosphere 1010.0 10 < th dose independent rect. 2 1
363 94.29 radiation 1.0 10 < th dose independent rect. 2 1
368 94.29 precipitation 0.1 10 < th dose independent rect. 2 1
370 94.29 temperature 10.0 10 > th dose independent rect. 3 23
372 94.29 radiation 1.0 10 < th dose dependent rect. 2 1
377 94.29 precipitation 0.1 10 < th dose dependent rect. 2 1
382 94.33 wind 1.0 30 > th dose independent rect. 2 1
391 94.36 atmosphere 995.0 4320 < th dose dependent sin 5 NA
408 94.45 wind 9.0 10 < th dose dependent rect. 2 1
409 94.45 atmosphere 995.0 10 > th dose dependent rect. 2 1
410 94.46 humidity 50.0 10 > th dose dependent rect. 2 1
417 94.56 precipitation 0.1 10 < th dose independent rect. 3 23
419 94.56 precipitation 0.1 10 < th dose dependent rect. 3 23
423 94.60 temperature 10.0 10 > th dose dependent rect. 2 1
424 94.60 humidity 90.0 10 > th dose dependent rect. 2 1
444 94.75 precipitation 0.1 90 < th dose independent rect. 1 2
445 94.75 precipitation 0.1 90 < th dose dependent rect. 1 2
447 94.77 temperature 10.0 90 > th dose independent rect. 1 2
449 94.77 temperature 30.0 90 < th dose independent rect. 1 2
450 94.77 humidity 50.0 90 > th dose independent rect. 1 2
453 94.77 atmosphere 995.0 90 > th dose independent rect. 1 2
454 94.77 atmosphere 1010.0 90 < th dose independent rect. 1 2
456 94.77 radiation 1.0 90 < th dose independent rect. 1 2
461 94.77 temperature 10.0 90 > th dose independent rect. 3 22
464 94.77 radiation 1.0 90 < th dose dependent rect. 1 2
473 94.81 precipitation 0.1 90 < th dose independent rect. 3 22
474 94.81 radiation 1.0 4320 < th dose dependent rect. 3 1
475 94.81 temperature 10.0 90 > th dose dependent rect. 1 2
476 94.81 precipitation 0.1 90 < th dose dependent rect. 3 22
516 94.91 humidity 90.0 10 > th dose independent rect. 2 1
549 95.06 atmosphere 995.0 4320 < th dose independent sin 6 NA
589 95.21 wind 9.0 1440 < th dose independent rect. 3 1
590 95.21 temperature 10.0 1440 > th dose independent rect. 3 1
593 95.21 temperature 30.0 1440 < th dose independent rect. 3 1
597 95.21 humidity 50.0 1440 > th dose independent rect. 3 1
606 95.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
607 95.21 radiation 1.0 1440 < th dose independent rect. 3 1
628 95.21 temperature 10.0 1440 > th dose independent rect. 4 23
648 95.26 temperature 30.0 30 < th dose independent rect. 3 23
672 95.41 radiation 30.0 10 < th dose dependent rect. 12 1
743 95.47 humidity 90.0 90 < th dose independent rect. 1 2
811 95.62 atmosphere 1005.0 90 < th dose dependent rect. 10 1
818 95.64 humidity 90.0 720 < th dose independent rect. 3 1
819 95.64 precipitation 0.1 4320 > th dose independent rect. 20 1
855 95.72 humidity 50.0 90 > th dose independent rect. 3 22
860 95.74 precipitation 0.1 4320 < th dose independent rect. 20 1
862 95.74 precipitation 0.1 4320 < th dose dependent rect. 20 1
906 95.97 humidity 90.0 720 < th dose independent rect. 24 5
971 96.12 atmosphere 1000.0 30 < th dose independent rect. 11 11
983 96.14 wind 1.0 90 > th dose independent rect. 3 22