BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0519400 Os06g0519400|AK119453
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0519400 Zinc finger, CCCH-type domain containing protein 531 e-151
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 258 5e-69
Os11g0472000 Zinc finger, CCCH-type domain containing protein 127 1e-29
Os01g0917400 Zinc finger, CCCH-type domain containing protein 118 4e-27
Os12g0405100 Similar to Floral homeotic protein HUA1 115 3e-26
Os01g0257400 Zinc finger, CCCH-type domain containing protein 108 5e-24
Os01g0258700 Zinc finger, CCCH-type domain containing protein 107 1e-23
Os01g0616400 Similar to Floral homeotic protein HUA1 99 3e-21
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 84 1e-16
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/279 (91%), Positives = 254/279 (91%)
Query: 1 MMQILCECCNSDHRXXXXXXXXXXXXXXXXXXXXXXXXXQQHASSTVKTLDDRRPAGTSS 60
MMQILCECCNSDHR QQHASSTVKTLDDRRPAGTSS
Sbjct: 1 MMQILCECCNSDHRSSSTPMATTTSSSASDPAAISPTPSQQHASSTVKTLDDRRPAGTSS 60
Query: 61 SAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEHPQR 120
SAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEHPQR
Sbjct: 61 SAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEHPQR 120
Query: 121 PGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNF 180
PGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNF
Sbjct: 121 PGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNF 180
Query: 181 LGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVL 240
LGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVL
Sbjct: 181 LGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVL 240
Query: 241 DHGELNEQPVPSKDDFQVSFVQNIVGFNFYIWCDPELAP 279
DHGELNEQPVPSKDDFQVSFVQNIVGFNFYIWCDPELAP
Sbjct: 241 DHGELNEQPVPSKDDFQVSFVQNIVGFNFYIWCDPELAP 279
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/215 (61%), Positives = 152/215 (70%), Gaps = 14/215 (6%)
Query: 54 RPAGTSSSAGET--EPKAAVE------PQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105
RP GET +PK V +++PRRPG PDCSYYV+FGSCKFG+ C+YNHP
Sbjct: 11 RPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHP 70
Query: 106 AKHA--GGCDKL---EHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDR-LPQQQVYFPW 159
G DK + P+RPGE DC +Y++FG CK+GMNCRFNHPP +P QQ YF
Sbjct: 71 DPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSG 130
Query: 160 KACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHE 219
ACHCHH EGKS+ E VKLN LGLPLRPGTGLCSYYMNRGICKFG+NCKF HP+ GS HE
Sbjct: 131 NACHCHHIEGKSKVEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPGSDHE 190
Query: 220 KWDGSLQTNQISSGVNIYSVLDHGELNEQPVPSKD 254
KW S NQ+SS VNIYSVLDHGE NE S++
Sbjct: 191 KWVVSSNANQVSSQVNIYSVLDHGESNEHTFTSEE 225
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 98/197 (49%), Gaps = 31/197 (15%)
Query: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH----AGGCDKLEHPQRPGEHD 125
A+E YP R G PDCSYY+ G C+FGM C +NHPA A K E+PQR G+ +
Sbjct: 17 AMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPE 76
Query: 126 CLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPL 185
C +YL+ G CK+G C+F+HP E + A V+LN LG PL
Sbjct: 77 CQYYLKTGTCKFGATCKFHHP--------------------REKAAIATRVQLNALGYPL 116
Query: 186 RPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVLDH--- 242
RP C+YY+ G CKFGS CKFHHP + GS+ S G ++ S H
Sbjct: 117 RPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSV----YSPGQSVTSPSQHTYP 172
Query: 243 GELNEQPVPSKDDFQVS 259
G + P+ F S
Sbjct: 173 GAVTNWPLSRSASFIAS 189
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 20/95 (21%)
Query: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
P+RP + +C Y++ G CK+G C+F+HP +R+ P C
Sbjct: 277 PERPDQPECQFYMKTGDCKFGAVCKFHHPKERI------IPTPNC--------------A 316
Query: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
L+ LGLPLRPG +C++Y GICKFG NCKF HP
Sbjct: 317 LSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHP 351
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAG-----GCDKLEHPQRPGEHDCLHYL 130
+P RP P+C +Y++ G CKFG C ++HP + L P RPGE C Y
Sbjct: 276 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYS 335
Query: 131 RFGRCKYGMNCRFNHP 146
R+G CK+G NC+F+HP
Sbjct: 336 RYGICKFGPNCKFDHP 351
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 81/147 (55%), Gaps = 24/147 (16%)
Query: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH----AGGCDKLEHPQRPGEHD 125
A++P YP R G PDC+YY+ G C+FGM C +NHP A K E+P+R G+ +
Sbjct: 71 AMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQPE 130
Query: 126 CLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPL 185
C +YL+ G CK+G C+F+HP E A V+LN LG PL
Sbjct: 131 CQYYLKTGTCKFGPTCKFHHP--------------------REKAGIAGRVQLNTLGYPL 170
Query: 186 RPGTGLCSYYMNRGICKFGSNCKFHHP 212
RP C+YY+ G CK+G+ CKFHHP
Sbjct: 171 RPSEKECAYYLKTGQCKYGNTCKFHHP 197
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 20/96 (20%)
Query: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
P+RP + +C +Y++ G CK+G C+F+HP R P C
Sbjct: 330 PERPDQPECQYYMKTGDCKFGAVCKFHHPRVRS------MPTPDC--------------V 369
Query: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPN 213
L+ +GLPLRPG LC +Y GICKFG+NCKF HP
Sbjct: 370 LSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT 405
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGC-----DKLEHPQRPGEHDCLHYL 130
+P RP P+C YY++ G CKFG C ++HP + + P RPGE C Y
Sbjct: 329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYS 388
Query: 131 RFGRCKYGMNCRFNHP 146
R+G CK+G NC+F+HP
Sbjct: 389 RYGICKFGANCKFDHP 404
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 81/147 (55%), Gaps = 24/147 (16%)
Query: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPA--KHAGGCDKL--EHPQRPGEHD 125
++E YP R G PDCSYY+ G C+FGM C +NHP K A ++ E+P R G+ +
Sbjct: 57 SMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNGEYPYRVGQPE 116
Query: 126 CLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPL 185
C +YL+ G CK+G C+F+HP E + A V+LN LG P+
Sbjct: 117 CQYYLKTGTCKFGATCKFHHP--------------------REKAALANRVQLNVLGYPM 156
Query: 186 RPGTGLCSYYMNRGICKFGSNCKFHHP 212
RP C+YY+ G CKF S CKFHHP
Sbjct: 157 RPNEKECAYYLRTGQCKFASTCKFHHP 183
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
P+RP + +C Y++ G CK+G C+F+HP +RL A +
Sbjct: 316 PERPDQPECQFYMKTGDCKFGAVCKFHHPKERL--------------------VPAPNCA 355
Query: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPN-----SGSGHEKWDGSLQTNQIS- 231
LN LGLPLRPG +C++Y GICKFG NCKF HP + + D S Q+S
Sbjct: 356 LNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSMHYQLSP 415
Query: 232 SGVNIYSVLDHGELNEQPVPSKDDFQV 258
S + +LD G VP D Q+
Sbjct: 416 SPGHPGILLDGGSGRSHRVPQSDSQQI 442
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH---AGGC--DKLEHPQRPGEHDCLHYL 130
+P RP P+C +Y++ G CKFG C ++HP + A C + L P RPGE C Y
Sbjct: 315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYS 374
Query: 131 RFGRCKYGMNCRFNHPPDRL 150
R+G CK+G NC+F+HP L
Sbjct: 375 RYGICKFGPNCKFDHPMGTL 394
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 100/221 (45%), Gaps = 42/221 (19%)
Query: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGC---------DKLEHPQR 120
AV P RPG DC YY+ G+C +G C YNHP A E+P+R
Sbjct: 42 AVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPER 101
Query: 121 PGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNF 180
PG+ C +Y++ G CK+G NC+++HP EG +A V LN
Sbjct: 102 PGQPVCEYYMKNGTCKFGSNCKYDHP--------------------REGSVQA--VMLNS 139
Query: 181 LGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWD--GSLQTNQISSGVNIYS 238
G PLR G C+YY+ G CKFGS CKFHHP G E + +Q ISS + Y
Sbjct: 140 SGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSS-HPYQ 198
Query: 239 VLDHGELNEQPVPSKDDFQVSF--------VQNIVGFNFYI 271
L ++ PV S+ V + G+N YI
Sbjct: 199 HLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYI 239
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 52 DRRPAGTSSSAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP---AKH 108
DR A + G+T A EYP RPG P C YY++ G+CKFG C Y+HP +
Sbjct: 79 DRAAAAVLNGGGKTTHSA-----EYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQ 133
Query: 109 AGGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHP 146
A + +P R GE DC +Y++ G CK+G C+F+HP
Sbjct: 134 AVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHP 171
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 20/95 (21%)
Query: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
P RPG+ +C +YL+ G CK+G C+++HP Q + P C
Sbjct: 297 PARPGQPECQYYLKTGSCKFGSACKYHHP------QYLNTPKSNC--------------M 336
Query: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
L+ LGLPLRPG+ C+YY G CKFG CKF HP
Sbjct: 337 LSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHP 371
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHP-----AKHAGGCDKLEHPQRPGEHDCLHYL 130
+P RPG P+C YY++ GSCKFG C Y+HP K L P RPG C +Y
Sbjct: 296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYT 355
Query: 131 RFGRCKYGMNCRFNHPPDRL 150
+ G CK+G C+F+HP L
Sbjct: 356 QHGFCKFGPTCKFDHPMGTL 375
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 91/185 (49%), Gaps = 34/185 (18%)
Query: 77 PRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAG--------GCDKLEHPQRPGEHDCLH 128
P RPG DC YY+ G+C FG RC YNHP G L++P+R G+ C +
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 129 YLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPG 188
Y++ G CK+G NC+++HP Q P V LN G P+R G
Sbjct: 117 YMKTGTCKFGTNCKYHHP----KQDGAVLP-----------------VMLNNSGFPIRLG 155
Query: 189 TGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDG---SLQTNQISSGVNIYSVLDHGEL 245
CSYYM G CKFG+ CKFHHP G G G LQ+ I+S + Y+ L + ++
Sbjct: 156 EKECSYYMKTGQCKFGTTCKFHHPEFG-GVPMTPGIYPPLQSPSIAS-PHPYASLANWQM 213
Query: 246 NEQPV 250
PV
Sbjct: 214 GRPPV 218
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHP-----AKHAGGCDKLEHPQRPGEHDCLHYL 130
+P RPG PDC YY+ G CKFG C Y+HP K + L P RPG C +Y
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 131 RFGRCKYGMNCRFNHP 146
+ G C+YG+ C+++HP
Sbjct: 364 QNGYCRYGVACKYDHP 379
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
P+RPG+ DC +Y+R G CK+G C+++HP E +
Sbjct: 305 PERPGQPDCQYYMRTGDCKFGATCKYHHP--------------------RELSAPKSGYM 344
Query: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHE 219
+N L LPLRPG C+YY G C++G CK+ HP G+
Sbjct: 345 VNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYS 386
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 75 EYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCDKLEH----PQRPGEHDCLHYL 130
+YP R G P C YY++ G+CKFG C Y+HP + + + P R GE +C +Y+
Sbjct: 104 DYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYM 163
Query: 131 RFGRCKYGMNCRFNHP 146
+ G+CK+G C+F+HP
Sbjct: 164 KTGQCKFGTTCKFHHP 179
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 25/171 (14%)
Query: 68 KAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGG------------CDKL 115
+AA + YP + G PDC ++++ G CKFG +C +NHP + D
Sbjct: 144 EAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSS 203
Query: 116 EHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPD-RLPQQQVYFPWKACHCHHSEGKSEAE 174
P RP E C Y + G+CK+ C+FNHP D +P Q ++ S A+
Sbjct: 204 ILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAAD 263
Query: 175 HV------------KLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPN 213
V + N GLP+RPG C +YM G CKFGS C+F+HP+
Sbjct: 264 SVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPD 314
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 95/216 (43%), Gaps = 56/216 (25%)
Query: 40 QQHASSTVKTLDDRRPAGTSSSAGETEPKAAVEPQEY-----PRRPGVPDCSYYVEFGSC 94
+ ++ TV+ D A S SA P AA QE+ P RPG DC +Y++ GSC
Sbjct: 245 EPESAVTVEGETDIGSAADSVSAKMQTPVAAA--QEFNSKGLPMRPGEVDCPFYMKMGSC 302
Query: 95 KFGMRCLYNHPAK----------------------------------HAG----GCDKLE 116
KFG C +NHP + HA G +
Sbjct: 303 KFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVT 362
Query: 117 HPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHV 176
+PQRPG C Y++ G CK+ C+F+HP DR P + + +E E V
Sbjct: 363 YPQRPGATVCDFYMKTGFCKFADRCKFHHPIDR------SAPDPSANWEPAE-----ESV 411
Query: 177 KLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
+L GLP R +C++YM G+CKFG CKF HP
Sbjct: 412 QLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 447
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 45 STVKTLDDRRPAGTSSSAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNH 104
STV+ ++ A SS+ P+ YP+RPG DC++Y+ +CKFG C ++H
Sbjct: 75 STVEQIE----ALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDH 130
Query: 105 PA----------KHAGGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQ 154
P K A ++ +P++ GE DC +++ G+CK+G C+FNHP +++
Sbjct: 131 PQWVPEGGIPNWKEAANVEE-SYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNAL- 188
Query: 155 VYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNS 214
+ G + +H+ + LP+RP LCS+Y G CKF + CKF+HP
Sbjct: 189 ------------ASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKD 236
Query: 215 GSGHEKWDGSLQTNQISSGVNIYSVLDHGELNEQ-PVPSKDDF 256
+ + +I S D Q PV + +F
Sbjct: 237 IEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEF 279
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 66/138 (47%), Gaps = 27/138 (19%)
Query: 123 EHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLG 182
+ +C +Y G CK+G C++ H EGK++AE V LNFLG
Sbjct: 240 QEECKYYSTPGGCKFGKACKY------------------LHRDGKEGKTDAEKVDLNFLG 281
Query: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGS--------GHEKWDGSLQTNQISSGV 234
LPLRPG C YYM G CK+ +NCKFHHP+ + HE D Q Q SS
Sbjct: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQ 341
Query: 235 NIYSVL-DHGELNEQPVP 251
S+ D +NE VP
Sbjct: 342 PNASIWPDQRTVNEHHVP 359
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 71 VEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNH---PAKHAGGCDKLEHPQRPGEHDCL 127
V +EYP RPG P+C ++V+ G CKF M+C Y+H P AG L P +P + C
Sbjct: 425 VPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCT 484
Query: 128 HYLRFGRCKYGMNCRFNHP 146
+Y R+G CK+G C +NHP
Sbjct: 485 YYGRYGVCKFGPACAYNHP 503
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 59 SSSAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP---AKHAGGCDKL 115
S SAG P+ P E+ VP YY + NHP A G ++
Sbjct: 366 SYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQV 425
Query: 116 ---EHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSE 172
E+P+RPG+ +C H+++ G CK+ M C+++HP +P
Sbjct: 426 PSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGA----------------- 468
Query: 173 AEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
L+ LGLP++P +C+YY G+CKFG C ++HP
Sbjct: 469 -----LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,806,933
Number of extensions: 499455
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 30
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)