Os01g0257400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os01g0257400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.81 | 0.422 | 7.53 | -0.149 | 0.287 | 1.63 | 0.512 | -1.85 | 0.241 | 2.69 | 29.53 | 48 | -- | -- |
| 84.49 | 0.428 | 7.57 | -0.413 | 0.261 | 1.64 | 0.0384 | -- | 0.197 | 2.05 | 29.2 | 33 | -- | -- |
| 81.46 | 0.42 | 7.54 | -0.21 | 0.273 | 1.67 | -- | -1.45 | 0.23 | 2.41 | 29.58 | 55 | -- | -- |
| 84.11 | 0.427 | 7.57 | -0.456 | 0.256 | 1.68 | -- | -- | 0.17 | 2.51 | 29.13 | 47 | -- | -- |
| 84.46 | 0.428 | 7.53 | -0.17 | -- | 1.92 | -- | -1.34 | 0.274 | -- | 29.64 | 40 | -- | -- |
| 121.86 | 0.518 | 7.64 | -0.871 | 0.813 | -- | 0.0937 | -- | -0.173 | 2.54 | -- | -- | -- | -- |
| 121.89 | 0.517 | 7.65 | -0.873 | 0.813 | -- | -- | -- | -0.174 | 2.54 | -- | -- | -- | -- |
| 86.87 | 0.434 | 7.56 | -0.397 | -- | 1.92 | -- | -- | 0.216 | -- | 29.5 | 43 | -- | -- |
| 89.24 | 0.44 | 7.56 | -- | 0.229 | 1.83 | -- | -- | 0.237 | 2.52 | 29.09 | 50 | -- | -- |
| 160.71 | 0.592 | 7.64 | -0.838 | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
| 141.97 | 0.557 | 7.62 | -- | 0.796 | -- | -- | -- | -0.0767 | 2.52 | -- | -- | -- | -- |
| 90.73 | 0.444 | 7.54 | -- | -- | 2.03 | -- | -- | 0.281 | -- | 29.39 | 47 | -- | -- |
| 179.25 | 0.625 | 7.62 | -- | -- | -- | -- | -- | -0.0606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 79.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 12 | 79.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 13 | 80.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 18 | 80.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 19 | 80.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 20 | 80.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 80.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 80.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 31 | 80.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 35 | 81.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 36 | 81.08 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 38 | 81.14 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 39 | 81.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 40 | 81.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 42 | 81.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 43 | 81.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 75 | 81.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 80 | 81.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 89 | 81.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 90 | 81.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 94 | 81.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 105 | 81.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 126 | 81.96 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 128 | 81.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 134 | 81.99 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 140 | 82.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 147 | 82.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 158 | 82.20 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 169 | 82.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 173 | 82.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 175 | 82.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 177 | 82.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 182 | 82.30 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 191 | 82.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 192 | 82.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 196 | 82.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 211 | 82.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 233 | 82.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 235 | 82.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 242 | 82.64 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 243 | 82.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 250 | 82.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 10 |
| 254 | 82.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 258 | 82.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 299 | 82.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 306 | 82.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 308 | 82.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 311 | 82.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 312 | 82.88 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 315 | 82.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 325 | 82.93 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 336 | 82.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 347 | 82.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 353 | 82.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 391 | 83.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 392 | 83.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 439 | 83.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 508 | 83.36 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 529 | 83.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 561 | 83.45 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 732 | 83.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 748 | 83.80 | temperature | 25 | 4320 | < th | dose independent | sin | 22 | NA |
| 783 | 83.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 830 | 83.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 877 | 83.98 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 892 | 84.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 893 | 84.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 895 | 84.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 899 | 84.01 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 907 | 84.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 916 | 84.02 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 942 | 84.06 | temperature | 25 | 4320 | > th | dose independent | sin | 22 | NA |
| 950 | 84.07 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |