BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0257400 Os01g0257400|AK073920
(466 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0257400 Zinc finger, CCCH-type domain containing protein 824 0.0
Os01g0258700 Zinc finger, CCCH-type domain containing protein 486 e-137
Os11g0472000 Zinc finger, CCCH-type domain containing protein 275 7e-74
Os12g0405100 Similar to Floral homeotic protein HUA1 262 3e-70
Os01g0917400 Zinc finger, CCCH-type domain containing protein 259 2e-69
Os01g0616400 Similar to Floral homeotic protein HUA1 149 4e-36
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 133 3e-31
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 119 5e-27
Os06g0519400 Zinc finger, CCCH-type domain containing protein 108 6e-24
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/466 (88%), Positives = 411/466 (88%)
Query: 1 MEPYAAAEXXXXXXXXXSTDTGLEESMWRMXXXXXXXXXXEAVAAGRLPERPGEADCVYY 60
MEPYAAAE STDTGLEESMWRM EAVAAGRLPERPGEADCVYY
Sbjct: 1 MEPYAAAEGGGGGGGGGSTDTGLEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYY 60
Query: 61 LRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGS 120
LRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGS
Sbjct: 61 LRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGS 120
Query: 121 NCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETP 180
NCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETP
Sbjct: 121 NCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETP 180
Query: 181 NMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYIS 240
NMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYIS
Sbjct: 181 NMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYIS 240
Query: 241 PVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLXXXXXXXXXXKQEPAFPARP 300
PVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPL KQEPAFPARP
Sbjct: 241 PVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARP 300
Query: 301 GQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFC 360
GQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCM CAYYTQHGFC
Sbjct: 301 GQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFC 360
Query: 361 KFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNYXXXXXXXXXXXXDLRPEYLLTKEF 420
KFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNY DLRPEYLLTKEF
Sbjct: 361 KFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTKEF 420
Query: 421 SANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTHGGEL 466
SANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTHGGEL
Sbjct: 421 SANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTHGGEL 466
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/444 (54%), Positives = 297/444 (66%), Gaps = 9/444 (2%)
Query: 18 STDTGLEESMWRM-----XXXXXXXXXXEAVAAGRLPERPGEADCVYYLRTGACGYGENC 72
S DTGLE MWRM + AAGRLPERPGE DCVYYLRTGACG+G+ C
Sbjct: 21 SPDTGLEGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRC 80
Query: 73 RYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPR-EGS 131
RYNHPRDR GG + + +YPER GQP+CEYYMK GTCKFG+NCKY HP+ +G+
Sbjct: 81 RYNHPRDRGGTE-FGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGA 139
Query: 132 VQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPI 191
V VMLN+SG+P+R GEK+C+YY+KTG CKFG+TCKFHHPE GGV TP +YPP+Q I
Sbjct: 140 VLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSI 199
Query: 192 SSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGH 251
+S HPY LA WQMGRPPV+PGS++ GSY PMML S ++P+QGW+PY + VN V S G
Sbjct: 200 ASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQ 259
Query: 252 QTVQAGPFYGLSHQGPSAAVTYGSQYAPLXXXXXXXXXXKQEPAFPARPGQPECQYYLKT 311
Q VQAGP YG+ H G S+ + YG Y P +QE FP RPGQP+CQYY++T
Sbjct: 260 QNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRT 319
Query: 312 GSCKFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFCKFGPTCKFDHP 371
G CKFG+ CKYHHP+ L+ PKS M CAYY Q+G+C++G CK+DHP
Sbjct: 320 GDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
Query: 372 MGTLSYSPSASSITDLPIAPYPLNYXXXXXXXXXXXXDLRPEYLLTKEFSANQSASPGTT 431
MGTL YSPSA ++D+PIAPYP+ + DLRPEY+ TK+ S NQ SP
Sbjct: 380 MGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAA 439
Query: 432 CGPAGAML--KAYAPHMLIRPQTS 453
P G++L + ++R QT+
Sbjct: 440 SEPVGSILPKGVFPADTMMRAQTN 463
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 275 bits (702), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 214/396 (54%), Gaps = 52/396 (13%)
Query: 25 ESMWRMXXXXXXXXXXEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDR---A 81
E+MW+M EA+ AG PER GE DC YY+RTG C +G C++NHP DR
Sbjct: 7 EAMWQMNLG-------EAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 59
Query: 82 AAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA--VMLNS 139
AAA + G EYP+R GQP C+YY+K GTCKFG+ CK+ HPRE + A V LN+
Sbjct: 60 AAARMKG--------EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNA 111
Query: 140 SGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGG--VSETPNMYPPVQPQPISSSHPY 197
GYPLR EK+C YY++TG CKFGSTCKFHHP+ V+ ++Y P Q S H Y
Sbjct: 112 LGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTY 171
Query: 198 -QHLAGWQMGRP------PVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGG 250
+ W + R P PG SY +++P +V + GWNPY + + +S
Sbjct: 172 PGAVTNWPLSRSASFIASPRWPGH---SSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQ 228
Query: 251 HQTVQAGPFY---------GLSHQGPSAAVTYGSQYAPLXXXXXXXXXXKQEPAFPARPG 301
+T +Y + QG ++ GS PL ++E FP RP
Sbjct: 229 QRTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGS--VPLGLYTV-----QRESIFPERPD 281
Query: 302 QPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFCK 361
QPECQ+Y+KTG CKFG+ CK+HHP+ P NC C +Y+++G CK
Sbjct: 282 QPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICK 341
Query: 362 FGPTCKFDHPMGTLSYSPSASSITDLP----IAPYP 393
FGP CKFDHPMGT+ Y + S D+ +AP P
Sbjct: 342 FGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVP 377
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 208/392 (53%), Gaps = 41/392 (10%)
Query: 24 EESMWRMXXXXXXXXXXEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDR--- 80
EE+MW+M E++ + PER GE DC YY+RTG C +G C++NHP +R
Sbjct: 44 EEAMWQMTLGGG-----ESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLA 98
Query: 81 AAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA--VMLN 138
AAA +NG EYP R GQP C+YY+K GTCKFG+ CK+ HPRE + A V LN
Sbjct: 99 VAAARMNG--------EYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLN 150
Query: 139 SSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGG--VSETPNMYPPVQPQPISSSHP 196
GYP+R EK+C YY++TG CKF STCKFHHP+ V+ +MY P Q S++ P
Sbjct: 151 VLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQ----SATSP 206
Query: 197 YQH-----LAGWQMGRP------PVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQV 245
QH + W + R P PG Y +++P +V + GWNPY + +
Sbjct: 207 GQHTYPGAVTNWTLSRSASFIASPRWPGH---SGYAQVIVPQGLVQVPGWNPYAAQMGSS 263
Query: 246 ASAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLXXXXX--XXXXXKQEPAFPARPGQP 303
+ +T +YG S Q + + Y + E FP RP QP
Sbjct: 264 SPDDQQRTPVTTQYYG-SRQSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQP 322
Query: 304 ECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFCKFG 363
ECQ+Y+KTG CKFG+ CK+HHP+ P NC C +Y+++G CKFG
Sbjct: 323 ECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFG 382
Query: 364 PTCKFDHPMGTLSYSPSASSITDLPIAPYPLN 395
P CKFDHPMGTL Y + S D+ Y L+
Sbjct: 383 PNCKFDHPMGTLMYGSATSPRGDVSSMHYQLS 414
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 201/381 (52%), Gaps = 28/381 (7%)
Query: 25 ESMWRMXXXXXXXXXXEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAA 84
E MW+ A+ G PER GE DC YYLRTG C +G +CR+NHP+DR A
Sbjct: 58 EGMWQQMTMSGSG----AMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAI 113
Query: 85 VLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE--GSVQAVMLNSSGY 142
EYPER GQP C+YY+K GTCKFG CK+ HPRE G V LN+ GY
Sbjct: 114 A-----SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGY 168
Query: 143 PLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGV---SETPNMYPPVQPQPISSSHPYQH 199
PLR EK+C YY+KTG CK+G+TCKFHHPE+ S +YP V +
Sbjct: 169 PLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGT 228
Query: 200 LAGWQMGRPPVLPGSFLSG--SYPPMMLPSTVVPMQGWNPYISPVNQVASAGGH-QTVQA 256
+A W R +P +Y PM++P +V + WN Y + V+S+ Q+ A
Sbjct: 229 MASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGA 288
Query: 257 GPFYGLSHQGPSAAVTYGSQYAPLXXXX--XXXXXXKQEPAFPARPGQPECQYYLKTGSC 314
YG S Q ++A G +P ++E FP RP QPECQYY+KTG C
Sbjct: 289 QQTYGTSQQVDASAGNQG-MLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDC 347
Query: 315 KFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFCKFGPTCKFDH---- 370
KFG+ CK+HHP+ + P +C+ C +Y+++G CKFG CKFDH
Sbjct: 348 KFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMA 407
Query: 371 -PMGTLSYSPSASSITDLPIA 390
PMG +Y S+ T++P+
Sbjct: 408 PPMGVYAY---GSASTNVPMV 425
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 150/370 (40%), Gaps = 122/370 (32%)
Query: 49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRA---AAAVLNGGGKTTHSAEYPERPGQP 105
PE+ GE DC ++++TG C +G C++NHP+++ A+ N S+ P RP +P
Sbjct: 153 PEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEP 212
Query: 106 VCEYYMKNGTCKFGSNCKYDHPRE--------------------------GSVQAVM--- 136
+C +Y K G CKF + CK++HP++ SV A M
Sbjct: 213 LCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTP 272
Query: 137 ------LNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQP 190
NS G P+R GE DC +Y+K G CKFGSTC+F+
Sbjct: 273 VAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFN--------------------- 311
Query: 191 ISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGG 250
HP + + + P+ G + + M+L S+ MQG++ +
Sbjct: 312 ----HPDRLVLNF-----PLPLGQTILPTPESMLLNSSANFMQGFDFH----------AA 352
Query: 251 HQTVQAGPFYGLSHQGPSAAVTYGSQYAPLXXXXXXXXXXKQEPAFPARPGQPECQYYLK 310
H V GP VTY P RPG C +Y+K
Sbjct: 353 HMPVGPGP------------VTY-----------------------PQRPGATVCDFYMK 377
Query: 311 TGSCKFGSACKYHHPQYLNTP---------KSNCMXXXXXXXXXXXXXXCAYYTQHGFCK 361
TG CKF CK+HHP + P + + CA+Y + G CK
Sbjct: 378 TGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCK 437
Query: 362 FGPTCKFDHP 371
FG CKFDHP
Sbjct: 438 FGMQCKFDHP 447
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 134/325 (41%), Gaps = 63/325 (19%)
Query: 98 YPERPGQPVCEYYMKNGTCKFGSNCKYDHPR---EGSV----QAVMLNSSGYPLRSGEKD 150
YP+RPG+ C +YM TCKFG +CK+DHP+ EG + +A + S YP + GE D
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEES-YPEQEGEPD 160
Query: 151 CTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQMGRPPV 210
C +++KTG CKFGS CKF+HP+ E N S + +HL PV
Sbjct: 161 CPFFMKTGKCKFGSKCKFNHPK-----EKVNAL-------ASGNTNDKHLIA-DSSILPV 207
Query: 211 LPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFYGLSHQGPSAA 270
P L Y + + + P + + ++ A G + G +A
Sbjct: 208 RPSEPLCSFY----AKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAAD 263
Query: 271 VTYGSQYAPLXXXXXXXXXXKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQ---- 326
P+ P RPG+ +C +Y+K GSCKFGS C+++HP
Sbjct: 264 SVSAKMQTPVAAAQEFNSK-----GLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVL 318
Query: 327 ---------YLNTPKSNCMXXXXXXXXXXX--------------------XXXCAYYTQH 357
L TP+S + C +Y +
Sbjct: 319 NFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKT 378
Query: 358 GFCKFGPTCKFDHPMGTLSYSPSAS 382
GFCKF CKF HP+ + PSA+
Sbjct: 379 GFCKFADRCKFHHPIDRSAPDPSAN 403
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCE 108
P+RPGE DC +Y+ T C +G +C+++HP+ + N YPE+ G+P C
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPDCP 162
Query: 109 YYMKNGTCKFGSNCKYDHPREG---------SVQAVMLNSSGYPLRSGEKDCTYYVKTGH 159
++MK G CKFGS CK++HP+E + + ++ +SS P+R E C++Y KTG
Sbjct: 163 FFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGK 222
Query: 160 CKFGSTCKFHHPEIGGVSETPN 181
CKF + CKF+HP+ + + N
Sbjct: 223 CKFRAMCKFNHPKDIEIPSSQN 244
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 81/165 (49%), Gaps = 42/165 (25%)
Query: 48 LPERPGEADCVYYLRTGACGYGENCRYNHPRDRAA----------------AAVLNGG-- 89
LP RPGE DC +Y++ G+C +G CR+NHP DR + +LN
Sbjct: 284 LPMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLVLNFPLPLGQTILPTPESMLLNSSAN 342
Query: 90 ---GKTTHSAE---------YPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSV----- 132
G H+A YP+RPG VC++YMK G CKF CK+ HP + S
Sbjct: 343 FMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSA 402
Query: 133 ------QAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHP 171
++V L +G P R C +Y+KTG CKFG CKF HP
Sbjct: 403 NWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 447
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEY-----PERPG 103
P+RPG C +Y++TG C + + C+++HP DR+A S + P R
Sbjct: 364 PQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRRED 423
Query: 104 QPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNS 139
VC +YMK G CKFG CK+DHP A + NS
Sbjct: 424 AVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNS 459
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 144/312 (46%), Gaps = 51/312 (16%)
Query: 104 QPVCEYYMKNGTCKFGSNCKYDHP--REGSVQA--VMLNSSGYPLRSGEKDCTYYVKTGH 159
Q C+YY G CKFG CKY H +EG A V LN G PLR GEK+C YY++TG
Sbjct: 240 QEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGS 299
Query: 160 CKFGSTCKFHHPEIGGVS------ETPNMYPPVQPQPISSSHPYQHLAGWQMGR------ 207
CK+ + CKFHHP+ V+ E N P Q SSS P + W R
Sbjct: 300 CKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASI--WPDQRTVNEHH 357
Query: 208 -PPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGGHQTVQAGPFY--GLSH 264
P + P S M+ P + P WN G+ V P+Y G+
Sbjct: 358 VPFIAPSPSYSAG---MLPPQGMYPPPEWN-------------GYHQVPLNPYYPPGVPF 401
Query: 265 QG-PSAAVTYGSQYAPLXXXXXXXXXXKQEPA--FPARPGQPECQYYLKTGSCKFGSACK 321
Q P+A + + AP +Q P+ +P RPGQPECQ+++K+G CKF CK
Sbjct: 402 QHFPAAPINHPMYKAP------EIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCK 455
Query: 322 YHHPQYLNTPKSNCMXXXXXXXXXXXXXXCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSA 381
YHHP+ P C YY ++G CKFGP C ++HP ++SP
Sbjct: 456 YHHPRSPVPPAG--ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP---FNFSPVP 510
Query: 382 SSITDLPIAPYP 393
++ L A YP
Sbjct: 511 AAGPPLLPAQYP 522
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 75 NHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA 134
NHP +A G + S EYPERPGQP C++++K+G CKF CKY HPR A
Sbjct: 410 NHPMYKAPEIP---GHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPA 466
Query: 135 VMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQP 188
L+ G P++ + CTYY + G CKFG C ++HP S P PP+ P
Sbjct: 467 GALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP--FNFSPVPAAGPPLLP 518
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 41 EAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRA-AAAVLNGGGKTTHSAEYP 99
+ V + PERPG+ +C +++++G C + C+Y+HPR A L+ G P
Sbjct: 423 QQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLG-------LP 475
Query: 100 ERPGQPVCEYYMKNGTCKFGSNCKYDHP 127
+P QPVC YY + G CKFG C Y+HP
Sbjct: 476 IKPDQPVCTYYGRYGVCKFGPACAYNHP 503
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 83/153 (54%), Gaps = 27/153 (17%)
Query: 49 PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCE 108
P RPGE DC YY++ G+C +G +C YNHP R +G + ++P RPG+P C
Sbjct: 42 PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQ----HGADDKKPAEQFPRRPGEPDCS 97
Query: 109 YYMKNGTCKFGSNCKYDHP---------------------REG--SVQAVMLNSSGYPLR 145
YY+K G+CKFG NC+++HP EG V+ V LN G PLR
Sbjct: 98 YYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLR 157
Query: 146 SGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSE 178
G C+YY+ G CKFG+ CKF HP+ G E
Sbjct: 158 PGTGLCSYYMNRGICKFGTNCKFDHPDPGSDHE 190
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 31/121 (25%)
Query: 45 AGRLPERPGEADCVYYLRTGACGYGENCRYNHP------------------------RDR 80
A + P RPGE DC YY++ G+C +G NCR+NHP + +
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 81 AAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSS 140
LN G P RPG +C YYM G CKFG+NCK+DHP GS + SS
Sbjct: 144 VEQVKLNVLG-------LPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPGSDHEKWVVSS 196
Query: 141 G 141
Sbjct: 197 N 197
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 89 GGKTTHSAE-YPERPGQPVCEYYMKNGTCKFGSNCKYDH--PREGSVQAVMLNSSGYPLR 145
GKT E +P RPG+P C YY+K G+CKFG +C Y+H PR + +P R
Sbjct: 31 AGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRR 90
Query: 146 SGEKDCTYYVKTGHCKFGSTCKFHHP 171
GE DC+YYVK G CKFG C+F+HP
Sbjct: 91 PGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 296 FPARPGQPECQYYLKTGSCKFGSACKYHHP---------QYLNTPKSNCMXXXXXXXXXX 346
FP RPG+P+C YY+K GSCKFG C+++HP +Y + +C
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQ 146
Query: 347 XXXX------------CAYYTQHGFCKFGPTCKFDHP 371
C+YY G CKFG CKFDHP
Sbjct: 147 VKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 291 KQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMXXXXXXXXXXXXXX 350
K E P RPG+P+C YY+K GSCKFG +C Y+HP ++
Sbjct: 36 KVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPD 95
Query: 351 CAYYTQHGFCKFGPTCKFDHP 371
C+YY + G CKFG C+F+HP
Sbjct: 96 CSYYVKFGSCKFGMNCRFNHP 116
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 42 AVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPER 101
AV P RPG DC YY+ G+C +G C YNHP A E+P+R
Sbjct: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGC---------DKLEHPQR 120
Query: 102 PGQPVCEYYMKNGTCKFGSNCKYDHP--------------------REGSVQA--VMLNS 139
PG+ C +Y++ G CK+G NC+++HP EG +A V LN
Sbjct: 121 PGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNF 180
Query: 140 SGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSE 178
G PLR G C+YY+ G CKFGS CKFHHP G E
Sbjct: 181 LGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHE 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,940,423
Number of extensions: 815869
Number of successful extensions: 2488
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2329
Number of HSP's successfully gapped: 26
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)