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Os01g0917400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.021) R2 : 0.855
β1 : -2.26 (0.0768) R2dD : 0.286 R2D : 0.155
β2 : 2.2 (0.0543) R2dC : 0.522 R2C : 0.442
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.994 (0.0448) R2dN8 : 0.21 R2N8 : 0.0636
σ : 0.394
deviance : 70.93
__
_____
C
peak time of C : 4.93
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.47 0.365 11.8 -0.599 2.17 -0.882 0.611 8.12 -0.73 4.9 27.07 4031 -- --
67.81 0.386 12 -2.22 2.1 -0.381 0.559 -- -0.988 5.04 27.07 4031 -- --
61.4 0.365 11.8 -0.581 2.17 -0.898 -- 8.32 -0.735 4.88 27.15 3995 -- --
67.77 0.383 12 -2.3 2.38 0.421 -- -- -0.978 4.86 35.36 27332 -- --
257.36 0.751 12 -1.7 -- -2.21 -- 3.53 -0.884 -- 27.15 3995 -- --
69.75 0.392 12 -2.26 2.2 -- 0.681 -- -0.991 4.94 -- -- -- --
70.93 0.394 12 -2.26 2.2 -- -- -- -0.994 4.93 -- -- -- --
193.66 0.648 12 -1.78 -- -2.24 -- -- -0.685 -- 24.4 271 -- --
157.03 0.584 11.9 -- 2.17 -0.958 -- -- -0.667 5 34.71 47448 -- --
325.83 0.843 12.1 -2.18 -- -- -- -- -0.938 -- -- -- -- --
205.94 0.671 12 -- 2.16 -- -- -- -0.742 4.97 -- -- -- --
279.73 0.779 12 -- -- -2.43 -- -- -0.5 -- 24.2 263 -- --
451.48 0.992 12 -- -- -- -- -- -0.696 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.62 wind 1 43200 < th dose dependent rect. 10 1
2 55.17 wind 1 43200 < th dose independent rect. 10 1
3 55.20 wind 1 43200 > th dose independent rect. 10 1
4 55.63 wind 1 43200 < th dose dependent rect. 13 13
6 55.88 wind 1 43200 < th dose dependent rect. 15 11
14 56.54 humidity 80 43200 > th dose independent rect. 20 2
15 56.56 wind 1 43200 > th dose independent rect. 21 5
16 56.60 wind 1 43200 < th dose dependent rect. 8 18
17 56.65 wind 1 43200 < th dose independent rect. 21 5
19 56.70 wind 1 43200 < th dose independent rect. 24 1
20 56.71 wind 3 43200 > th dose independent rect. 13 1
23 56.75 wind 1 43200 > th dose independent rect. 24 1
24 56.79 humidity 80 43200 < th dose dependent rect. 19 1
26 56.81 wind 1 43200 < th dose dependent rect. 24 1
28 56.90 humidity 70 43200 > th dose independent rect. 18 7
29 56.90 wind 1 43200 < th dose dependent rect. 21 1
33 56.93 humidity 80 43200 < th dose independent rect. 20 1
36 56.94 humidity 80 43200 > th dose independent rect. 19 4
41 56.99 radiation 40 43200 > th dose independent rect. 13 1
43 57.04 wind 1 43200 < th dose independent rect. 16 10
44 57.05 humidity 80 43200 < th dose dependent rect. 18 7
48 57.07 wind 1 43200 > th dose independent rect. 2 1
49 57.07 wind 3 43200 < th dose independent rect. 13 1
55 57.11 humidity 70 43200 > th dose independent rect. 18 13
58 57.13 radiation 20 43200 < th dose independent rect. 13 1
61 57.15 wind 1 43200 > th dose independent rect. 19 7
64 57.19 wind 1 43200 < th dose dependent rect. 19 7
67 57.20 humidity 80 43200 < th dose independent rect. 19 3
68 57.21 humidity 80 43200 < th dose independent rect. 18 6
70 57.22 radiation 20 43200 > th dose independent rect. 10 1
71 57.22 humidity 70 43200 > th dose independent rect. 17 18
73 57.23 wind 1 43200 < th dose dependent rect. 21 5
76 57.25 wind 1 43200 < th dose independent rect. 19 7
80 57.27 humidity 70 43200 < th dose independent rect. 16 19
88 57.29 wind 1 43200 < th dose dependent rect. 4 1
92 57.31 wind 1 43200 < th dose independent rect. 14 12
96 57.33 radiation 20 43200 > th dose independent rect. 9 5
114 57.38 wind 1 43200 < th dose dependent sin 17 NA
115 57.38 radiation 30 43200 < th dose dependent rect. 13 1
120 57.41 radiation 20 43200 < th dose dependent rect. 10 1
128 57.45 humidity 70 43200 > th dose independent sin 10 NA
137 57.46 humidity 70 43200 < th dose independent sin 10 NA
139 57.46 humidity 70 43200 < th dose independent rect. 16 9
142 57.47 wind 1 43200 > th dose independent rect. 16 10
158 57.52 radiation 10 43200 > th dose independent rect. 17 18
171 57.54 humidity 80 43200 < th dose dependent rect. 17 18
178 57.56 radiation 10 43200 > th dose independent rect. 6 5
196 57.57 radiation 1 43200 > th dose dependent rect. 13 1
205 57.60 wind 1 43200 < th dose independent rect. 2 1
228 57.65 humidity 70 43200 < th dose independent rect. 16 16
235 57.66 humidity 80 43200 < th dose dependent sin 12 NA
242 57.68 radiation 10 43200 > th dose independent sin 10 NA
294 57.71 humidity 70 43200 < th dose independent rect. 10 1
344 57.77 radiation 20 43200 > th dose independent rect. 13 1
412 57.85 radiation 20 43200 > th dose independent sin 23 NA
418 57.85 humidity 70 43200 < th dose independent rect. 12 23
420 57.86 wind 1 43200 < th dose independent rect. 4 1
425 57.86 humidity 70 43200 < th dose independent rect. 22 23
433 57.87 humidity 70 43200 < th dose independent rect. 6 21
442 57.88 humidity 70 43200 < th dose independent no NA NA
444 57.88 humidity 70 43200 > th dose independent rect. 9 2
448 57.88 wind 1 43200 > th dose independent rect. 14 12
455 57.88 humidity 70 43200 < th dose independent rect. 2 23
497 57.89 humidity 70 43200 < th dose independent rect. 9 23
521 57.90 humidity 80 43200 < th dose dependent rect. 10 1
531 57.91 radiation 30 43200 < th dose dependent rect. 10 4
570 57.94 radiation 20 43200 < th dose independent rect. 10 1
577 57.94 humidity 70 43200 < th dose independent rect. 22 15
607 57.96 radiation 20 43200 > th dose independent no NA NA
705 57.97 radiation 20 43200 < th dose independent rect. 10 4
727 57.98 radiation 20 43200 > th dose independent rect. 12 23
728 57.99 humidity 70 43200 < th dose independent sin 17 NA
741 57.99 humidity 60 43200 > th dose dependent rect. 19 2
745 58.00 humidity 60 43200 > th dose independent rect. 12 1
767 58.00 radiation 20 43200 < th dose dependent rect. 8 7
768 58.01 wind 1 43200 < th dose independent rect. 21 1
811 58.04 humidity 70 43200 < th dose independent sin 5 NA
852 58.06 humidity 70 43200 > th dose independent rect. 6 19
887 58.08 humidity 70 43200 > th dose independent rect. 24 21
990 58.11 humidity 70 43200 > th dose independent rect. 12 23
993 58.11 humidity 80 43200 < th dose dependent rect. 9 21
995 58.12 humidity 70 43200 > th dose independent no NA NA