BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0917400 Os01g0917400|AK098948
(439 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0917400 Zinc finger, CCCH-type domain containing protein 818 0.0
Os11g0472000 Zinc finger, CCCH-type domain containing protein 483 e-136
Os12g0405100 Similar to Floral homeotic protein HUA1 472 e-133
Os01g0257400 Zinc finger, CCCH-type domain containing protein 286 3e-77
Os01g0258700 Zinc finger, CCCH-type domain containing protein 284 9e-77
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 182 3e-46
Os01g0616400 Similar to Floral homeotic protein HUA1 144 1e-34
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 122 4e-28
Os06g0519400 Zinc finger, CCCH-type domain containing protein 119 4e-27
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 46 DEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNH 105
DEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNH
Sbjct: 46 DEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNH 105
Query: 106 PQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNT 165
PQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNT
Sbjct: 106 PQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNT 165
Query: 166 LGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPY 225
LGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPY
Sbjct: 166 LGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPY 225
Query: 226 TGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQS 285
TGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQS
Sbjct: 226 TGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQS 285
Query: 286 PGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTG 345
PGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTG
Sbjct: 286 PGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTG 345
Query: 346 DCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT 405
DCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT
Sbjct: 346 DCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT 405
Query: 406 MAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS 439
MAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS
Sbjct: 406 MAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS 439
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 483 bits (1243), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/378 (61%), Positives = 280/378 (74%), Gaps = 11/378 (2%)
Query: 55 LYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114
+ GE MWQ M+ AM+ GPYPER GEPDC+YY+RTGLCRFGM+C+FNHP DR +A+A
Sbjct: 4 VVGEAMWQ---MNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA 60
Query: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174
+ARMKGEYP+R+GQPECQYYLKTGTCKFG TCKFHHPREKA IA RVQLN LGYPLRP+E
Sbjct: 61 AARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNE 120
Query: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234
KECAYYL+TGQCK+G+TCKFHHP+ N M + RGS P ++ + Y G + +W
Sbjct: 121 KECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPL 180
Query: 235 PR-GSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYG 293
R SFI SPRW S+YA +IVP GLVQVP WN Y Q+ SS + + + GAQ G
Sbjct: 181 SRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTG 240
Query: 294 TSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVC 353
+ + G+QGM S Y++ S P+ Y +QRE++FPERPDQPECQ+YMKTGDCKFGAVC
Sbjct: 241 SRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVC 300
Query: 354 KFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVY 413
KFHHP+ R +PTP+C LS +GLPLRPGE +C FYSRYGICKFG NCKFDH PMG
Sbjct: 301 KFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDH-----PMGTV 355
Query: 414 AYGSAS--TNVPMVRRLL 429
YG A+ T RR+L
Sbjct: 356 MYGLATSPTGDVSARRML 373
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 271/374 (72%), Gaps = 8/374 (2%)
Query: 48 PSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQ 107
P H A E MWQ MT+ G +M+ PYPER GEPDC+YY+RTGLCRFGM+C+FNHP
Sbjct: 35 PHHLGVAAAEEAMWQ-MTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPP 93
Query: 108 DRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLG 167
+R LA+A+ARM GEYP R+GQPECQYYLKTGTCKFG TCKFHHPREKA +A RVQLN LG
Sbjct: 94 NRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLG 153
Query: 168 YPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTG 227
YP+RP+EKECAYYL+TGQCK+ +TCKFHHP+ N M + R S P +++ Y G
Sbjct: 154 YPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPG 213
Query: 228 TMASWAFPR-GSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSP 286
+ +W R SFI SPRW S YA +IVPQGLVQVP WN Y QM SS + + ++P
Sbjct: 214 AVTNWTLSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMG-SSSPDDQQRTP 272
Query: 287 GAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGD 346
Q YG+ Q G+ GM Y+ S PV Y +Q EN+FPERPDQPECQ+YMKTGD
Sbjct: 273 VTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGD 332
Query: 347 CKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTM 406
CKFGAVCKFHHP+ R +P P+C L+ +GLPLRPGE +C FYSRYGICKFG NCKFDH
Sbjct: 333 CKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDH--- 389
Query: 407 APPMGVYAYGSAST 420
PMG YGSA++
Sbjct: 390 --PMGTLMYGSATS 401
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 221/381 (58%), Gaps = 28/381 (7%)
Query: 58 EGMWQQMTMSGSG----AMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAI 113
E MW+ G G A+ G PER GE DC YYLRTG C +G +CR+NHP+DR A
Sbjct: 25 ESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAA 84
Query: 114 A-----SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGY 168
EYPER GQP C+YY+K GTCKFG CK+ HPRE G V LN+ GY
Sbjct: 85 VLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE--GSVQAVMLNSSGY 142
Query: 169 PLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGT 228
PLR EK+C YY+KTG CK+G+TCKFHHPE+ + +YP V +
Sbjct: 143 PLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPN---MYPPVQPQPISSSHPYQH 199
Query: 229 MASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGA 288
+A W R +P +Y PM++P +V + WN Y + V+S+ Q+ A
Sbjct: 200 LAGWQMGRPPVLPGSFLSG--SYPPMMLPSTVVPMQGWNPYISPVNQVASAGGH-QTVQA 256
Query: 289 QQTYGTSQQVDASAGNQG-MLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDC 347
YG S Q ++A G +P SS+ +P + ++E FP RP QPECQYY+KTG C
Sbjct: 257 GPFYGLSHQGPSAAVTYGSQYAPLSSST--MPSSSSKQEPAFPARPGQPECQYYLKTGSC 314
Query: 348 KFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMA 407
KFG+ CK+HHP+ + P +C+LSP+GLPLRPG + C +Y+++G CKFG CKFDH
Sbjct: 315 KFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDH---- 370
Query: 408 PPMGVYAY---GSASTNVPMV 425
PMG +Y S+ T++P+
Sbjct: 371 -PMGTLSYSPSASSITDLPIA 390
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 284 bits (727), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 206/343 (60%), Gaps = 19/343 (5%)
Query: 78 PERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG----EYPERMGQPECQY 133
PER GE DC YYLRTG C FG CR+NHP+DR + +YPER GQP C+Y
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 134 YLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCK 193
Y+KTGTCKFG CK+HHP++ + V LN G+P+R EKEC+YY+KTGQCK+G TCK
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQDGAVL-PVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175
Query: 194 FHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAP 253
FHHPE F + + G IYP + S + A P ++A+W R +P P +Y P
Sbjct: 176 FHHPE-FGGVPMTPG--IYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYI--PGSYTP 230
Query: 254 MIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASA-GNQGMLSPYR 312
M++ G++ + W+ Y + PV S ++ Q+ A YG +S G PY
Sbjct: 231 MMLSSGMIPLQGWSPYPASVNPVVSGGAQ-QNVQAGPVYGMGHHGSSSTIAYGGPYVPYA 289
Query: 313 SSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSP 372
SS+ Q+E+ FPERP QP+CQYYM+TGDCKFGA CK+HHPR S P +++
Sbjct: 290 SSTGQSSNN--QQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNS 347
Query: 373 VGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYAY 415
+ LPLRPG + C +Y++ G C++G CK+DH PMG Y
Sbjct: 348 LCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PMGTLGY 385
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGE--YPERMGQPECQYY 134
+PER G+PDC YY+RTG C+FG +C+++HP++ + A S M P R G C YY
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELS-APKSGYMVNSLCLPLRPGAQPCAYY 362
Query: 135 LKTGTCKFGPTCKFHHPREKAG 156
+ G C++G CK+ HP G
Sbjct: 363 AQNGYCRYGVACKYDHPMGTLG 384
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 156/309 (50%), Gaps = 39/309 (12%)
Query: 109 RNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG--IAGRVQLNTL 166
+ L +A + K E Q EC+YY G CKFG CK+ H K G A +V LN L
Sbjct: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
Query: 167 GYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSV-HSSATAGPPY 225
G PLRP EKEC YY++TG CKY CKFHHP+ N + P + H + A P
Sbjct: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKD------PQLEHENGDA--PQ 332
Query: 226 TGTMASWAFPRGSFIPSPRWQN----------PSNYAPMIVPQGLVQVPSWNSYTGQMMP 275
S + P S P R N PS A M+ PQG+ P WN Y +P
Sbjct: 333 QDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGY--HQVP 390
Query: 276 VSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQ 335
++ PG Q A+ N M Y++ P Q E +PERP Q
Sbjct: 391 LNP----YYPPGV-----PFQHFPAAPINHPM---YKAPEIPGHQQVPSEE--YPERPGQ 436
Query: 336 PECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKF 395
PECQ+++K+G CKF CK+HHP RS P LSP+GLP++P + +C +Y RYG+CKF
Sbjct: 437 PECQHFVKSGFCKFRMKCKYHHP--RSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKF 494
Query: 396 GANCKFDHP 404
G C ++HP
Sbjct: 495 GPACAYNHP 503
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 103 FNHPQDRNLAIASARM--KGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGR 160
NHP + I + EYPER GQPECQ+++K+G CKF CK+HHPR AG
Sbjct: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG- 467
Query: 161 VQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPS 214
L+ LG P++P + C YY + G CK+G C ++HP F+ + ++ G P+ P+
Sbjct: 468 -ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAA-GPPLLPA 519
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 50 HDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDR 109
H PAA M++ + G + YPER G+P+C +++++G C+F M C+++HP+
Sbjct: 403 HFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRS- 461
Query: 110 NLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHP 151
+ A A P + QP C YY + G CKFGP C ++HP
Sbjct: 462 PVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 162/366 (44%), Gaps = 81/366 (22%)
Query: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEY--------PERMGQ 128
YPE+ GEPDC ++++TG C+FG C+FNHP+++ A+AS ++ P R +
Sbjct: 152 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSE 211
Query: 129 PECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKY 188
P C +Y KTG CKF CKF+HP++ + P +E E A ++ G+
Sbjct: 212 PLCSFYAKTGKCKFRAMCKFNHPKD------------IEIPSSQNEPESAVTVE-GETDI 258
Query: 189 GN-----TCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSP 243
G+ + K P +S+G P+ P P+ M S F GS +
Sbjct: 259 GSAADSVSAKMQTPVAAAQEFNSKGLPMRP-----GEVDCPFYMKMGSCKF--GS---TC 308
Query: 244 RWQNPSNYAPMI-VPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASA 302
R+ +P +P G +P T + M ++SS + +Q
Sbjct: 309 RFNHPDRLVLNFPLPLGQTILP-----TPESMLLNSSANFMQG----------------- 346
Query: 303 GNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRS 362
+ ++ PV + +P+RP C +YMKTG CKF CKFHHP RS
Sbjct: 347 ------FDFHAAHMPVGPGPV----TYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRS 396
Query: 363 MPTPDCVLSP---------VGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVY 413
P P P GLP R +C FY + G+CKFG CKFDHP PP
Sbjct: 397 APDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP---PPQEAI 453
Query: 414 AYGSAS 419
A S S
Sbjct: 454 AKVSNS 459
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 14/135 (10%)
Query: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQ------DRNLAIASARMKGEYPERMGQPE 130
YP+R GE DC +Y+ T C+FG SC+F+HPQ N A A ++ YPE+ G+P+
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEA-ANVEESYPEQEGEPD 160
Query: 131 CQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLN-------TLGYPLRPSEKECAYYLKT 183
C +++KTG CKFG CKF+HP+EK N + P+RPSE C++Y KT
Sbjct: 161 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 220
Query: 184 GQCKYGNTCKFHHPE 198
G+CK+ CKF+HP+
Sbjct: 221 GKCKFRAMCKFNHPK 235
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 322 ALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVR-----SMPTPD--CVLSPVG 374
A E +PE+ +P+C ++MKTG CKFG+ CKF+HP+ + S T D +
Sbjct: 145 AANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSI 204
Query: 375 LPLRPGEELCKFYSRYGICKFGANCKFDHP 404
LP+RP E LC FY++ G CKF A CKF+HP
Sbjct: 205 LPVRPSEPLCSFYAKTGKCKFRAMCKFNHP 234
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 74 PGP--YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMK----------GE 121
PGP YP+R G C +Y++TG C+F C+F+HP DR+ SA +
Sbjct: 358 PGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAG 417
Query: 122 YPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIA 158
P R C +Y+KTG CKFG CKF HP + IA
Sbjct: 418 LPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIA 454
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 291 TYGTSQQVDASAGNQGMLS-PYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKF 349
++ T +Q++A + M P SS P+ +P+RP + +C +YM T CKF
Sbjct: 73 SHSTVEQIEALYSSNTMTKRPRLESSLPI----------YPQRPGEKDCAFYMMTRTCKF 122
Query: 350 GAVCKFHHPRVR---SMPT-PDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT 405
G CKF HP+ +P + P + GE C F+ + G CKFG+ CKF+HP
Sbjct: 123 GGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPK 182
Query: 406 MAPPMGVYAYGSASTN 421
V A S +TN
Sbjct: 183 EK----VNALASGNTN 194
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 22/155 (14%)
Query: 66 MSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGE-YPE 124
++G +P R GEPDC+YY++ G C+FG+SC +NHP R A + E +P
Sbjct: 30 VAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPR 89
Query: 125 RMGQPECQYYLKTGTCKFGPTCKFHHP---------------------REKAGIAGRVQL 163
R G+P+C YY+K G+CKFG C+F+HP E +V+L
Sbjct: 90 RPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKL 149
Query: 164 NTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPE 198
N LG PLRP C+YY+ G CK+G CKF HP+
Sbjct: 150 NVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPD 184
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 53/99 (53%), Gaps = 25/99 (25%)
Query: 329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTP---------------------- 366
FP RP +P+C YY+K G CKFG C+F+HP MP P
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPP--RMPVPPQQEYFSGNACHCHHIEGKSKV 144
Query: 367 -DCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHP 404
L+ +GLPLRPG LC +Y GICKFG NCKFDHP
Sbjct: 145 EQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 317 PVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLP 376
PV + E P RP +P+C YY+K G CKFG C ++HP R D P
Sbjct: 29 PVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFP 88
Query: 377 LRPGEELCKFYSRYGICKFGANCKFDHPTM--APPMGVYAYGSA 418
RPGE C +Y ++G CKFG NC+F+HP PP Y G+A
Sbjct: 89 RRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNA 132
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 81/148 (54%), Gaps = 24/148 (16%)
Query: 70 GAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQP 129
A++P YP R G PDC+YY+ G C+FGM C +NHP A K E+P+R G+
Sbjct: 69 AAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH----AGGCDKLEHPQRPGEH 124
Query: 130 ECQYYLKTGTCKFGPTCKFHHP--------------------REKAGIAGRVQLNTLGYP 169
+C +YL+ G CK+G C+F+HP E A V+LN LG P
Sbjct: 125 DCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLP 184
Query: 170 LRPSEKECAYYLKTGQCKYGNTCKFHHP 197
LRP C+YY+ G CK+G+ CKFHHP
Sbjct: 185 LRPGTGLCSYYMNRGICKFGSNCKFHHP 212
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 24/122 (19%)
Query: 69 SGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDR-------------NLAIAS 115
+G +P+R GE DC +YLR G C++GM+CRFNHP DR + +
Sbjct: 109 AGGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSE 168
Query: 116 ARMKGEY--------PERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG---IAGRVQLN 164
+ + E+ P R G C YY+ G CKFG CKFHHP +G G +Q N
Sbjct: 169 GKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTN 228
Query: 165 TL 166
+
Sbjct: 229 QI 230
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 20/96 (20%)
Query: 330 PERPDQPECQYYMKTGDCKFGAVCKFHHPRVRS------MPTPDC--------------V 369
P+RP + +C +Y++ G CK+G C+F+HP R P C
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 370 LSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPT 405
L+ +GLPLRPG LC +Y GICKFG+NCKF HP
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPN 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,720,033
Number of extensions: 787453
Number of successful extensions: 2136
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1980
Number of HSP's successfully gapped: 27
Length of query: 439
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 335
Effective length of database: 11,605,545
Effective search space: 3887857575
Effective search space used: 3887857575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)