Os11g0472000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os11g0472000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.91 | 0.387 | 9.53 | -1.26 | 1.33 | 1.13 | 0.203 | 0.276 | -0.577 | 8.33 | 24.84 | 79 | -- | -- |
| 68.02 | 0.384 | 9.52 | -1.23 | 1.33 | 1.09 | 0.17 | -- | -0.567 | 8.33 | 25.05 | 76 | -- | -- |
| 68 | 0.384 | 9.53 | -1.25 | 1.34 | 1.12 | -- | 0.25 | -0.58 | 8.32 | 24.72 | 70 | -- | -- |
| 68.08 | 0.384 | 9.52 | -1.22 | 1.33 | 1.09 | -- | -- | -0.564 | 8.35 | 25.04 | 70 | -- | -- |
| 125.78 | 0.522 | 9.58 | -1.52 | -- | 1.58 | -- | 0.889 | -0.627 | -- | 34.8 | 520 | -- | -- |
| 85.27 | 0.433 | 9.57 | -1.48 | 1.32 | -- | 0.193 | -- | -0.778 | 7.76 | -- | -- | -- | -- |
| 85.38 | 0.433 | 9.57 | -1.48 | 1.32 | -- | -- | -- | -0.778 | 7.76 | -- | -- | -- | -- |
| 119.43 | 0.509 | 9.54 | -1.01 | -- | 1.97 | -- | -- | -0.472 | -- | 41.13 | 552 | -- | -- |
| 103.29 | 0.473 | 9.48 | -- | 1.32 | 1.58 | -- | -- | -0.377 | 8.65 | 24.84 | 100 | -- | -- |
| 179.39 | 0.626 | 9.6 | -1.46 | -- | -- | -- | -- | -0.76 | -- | -- | -- | -- | -- |
| 143.08 | 0.56 | 9.53 | -- | 1.31 | -- | -- | -- | -0.614 | 7.84 | -- | -- | -- | -- |
| 144.04 | 0.559 | 9.5 | -- | -- | 2.34 | -- | -- | -0.315 | -- | 50.74 | 575 | -- | -- |
| 235.87 | 0.717 | 9.57 | -- | -- | -- | -- | -- | -0.597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 62.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 4 | 63.37 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 6 | 63.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 8 | 64.05 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 10 | 65.43 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 14 | 66.47 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 18 | 67.19 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 20 | 67.53 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 24 | 67.69 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 29 | 67.71 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 31 | 67.72 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 38 | 67.83 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 41 | 67.85 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 55 | 67.92 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 63 | 67.97 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 72 | 68.07 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 73 | 68.07 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 81 | 68.12 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 95 | 68.17 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 97 | 68.18 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 106 | 68.21 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 111 | 68.22 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 113 | 68.22 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 124 | 68.29 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 125 | 68.29 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 126 | 68.30 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 154 | 68.42 | wind | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 168 | 68.47 | temperature | 30.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 172 | 68.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 192 | 68.56 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 199 | 68.59 | temperature | 10.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 202 | 68.60 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 207 | 68.61 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 210 | 68.62 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 238 | 68.71 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 262 | 68.79 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 282 | 68.83 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 299 | 68.87 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 310 | 68.89 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 311 | 68.89 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 313 | 68.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 336 | 68.98 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 360 | 69.04 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 364 | 69.05 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 383 | 69.09 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 392 | 69.11 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 423 | 69.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 437 | 69.22 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 448 | 69.24 | humidity | 60.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 457 | 69.26 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 470 | 69.28 | humidity | 70.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 471 | 69.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 474 | 69.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 491 | 69.32 | humidity | 70.0 | 43200 | < th | dose dependent | no | NA | NA |
| 497 | 69.32 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 506 | 69.33 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 508 | 69.33 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 510 | 69.33 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 541 | 69.36 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 553 | 69.37 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 580 | 69.39 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 602 | 69.41 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 604 | 69.41 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 616 | 69.42 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 617 | 69.42 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 647 | 69.45 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 663 | 69.46 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 706 | 69.48 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 734 | 69.51 | radiation | 20.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 754 | 69.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 796 | 69.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 803 | 69.57 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 823 | 69.58 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 883 | 69.63 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 900 | 69.65 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 964 | 69.70 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 969 | 69.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 975 | 69.71 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 996 | 69.72 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 13 |