BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0472000 Os11g0472000|AK110345
(414 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0472000 Zinc finger, CCCH-type domain containing protein 862 0.0
Os12g0405100 Similar to Floral homeotic protein HUA1 702 0.0
Os01g0917400 Zinc finger, CCCH-type domain containing protein 484 e-137
Os01g0257400 Zinc finger, CCCH-type domain containing protein 302 3e-82
Os01g0258700 Zinc finger, CCCH-type domain containing protein 289 3e-78
Os12g0278800 Similar to Zinc finger CCCH type domain contai... 186 3e-47
Os01g0616400 Similar to Floral homeotic protein HUA1 184 1e-46
Os06g0520600 Similar to Zinc finger CCCH type domain contai... 129 5e-30
Os06g0519400 Zinc finger, CCCH-type domain containing protein 127 2e-29
>Os11g0472000 Zinc finger, CCCH-type domain containing protein
Length = 414
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 CGYVVGEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA 60
CGYVVGEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA
Sbjct: 1 CGYVVGEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA 60
Query: 61 AARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNE 120
AARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNE
Sbjct: 61 AARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNE 120
Query: 121 KECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPL 180
KECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPL
Sbjct: 121 KECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPL 180
Query: 181 SRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTG 240
SRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTG
Sbjct: 181 SRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTG 240
Query: 241 SRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVC 300
SRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVC
Sbjct: 241 SRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVC 300
Query: 301 KFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLA 360
KFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLA
Sbjct: 301 KFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLA 360
Query: 361 TSPTGDVSARRMLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS 414
TSPTGDVSARRMLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS
Sbjct: 361 TSPTGDVSARRMLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS 414
>Os12g0405100 Similar to Floral homeotic protein HUA1
Length = 454
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/411 (82%), Positives = 361/411 (87%), Gaps = 4/411 (0%)
Query: 7 EAMWQMNLG--EAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARM 64
EAMWQM LG E+ME+ PYPERIGEPDCSYYMRTGLCRFGMTCKFNHP +RK+AVAAARM
Sbjct: 45 EAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARM 104
Query: 65 KGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECA 124
GEYP R+GQPECQYYLKTGTCKFGATCKFHHPREKAA+A RVQLN LGYP+RPNEKECA
Sbjct: 105 NGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECA 164
Query: 125 YYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSA 184
YYLRTGQCKF STCKFHHPQPSNTMVAVR S+YSPGQS TSP QHTYPGAVTNW LSRSA
Sbjct: 165 YYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWTLSRSA 224
Query: 185 SFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHS 244
SFIASPRWPGHS YAQVIVP GLVQVPGWNPYAAQ+GSSS DDQQRT QYY GSR S
Sbjct: 225 SFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYY-GSRQS 283
Query: 245 ETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHH 304
ET MGD GM+ SYQ GSVP+G+YTVQ E+IFPERPDQPECQFYMKTGDCKFGAVCKFHH
Sbjct: 284 ETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHH 343
Query: 305 PKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPT 364
PKER++P PNCAL+SLGLPLRPGEP+CTFYSRYGICKFGPNCKFDHPMGT+MYG ATSP
Sbjct: 344 PKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPR 403
Query: 365 GDVSARR-MLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS 414
GDVS+ L+P P H + D SGRS R+ SDSQQIPSG+ EREAS
Sbjct: 404 GDVSSMHYQLSPSPGHPGILLDGGSGRSHRVPQSDSQQIPSGDGNAEREAS 454
>Os01g0917400 Zinc finger, CCCH-type domain containing protein
Length = 439
Score = 484 bits (1246), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/378 (61%), Positives = 280/378 (74%), Gaps = 11/378 (2%)
Query: 4 VVGEAMWQ---MNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA 60
+ GE MWQ M+ AM+ GPYPER GEPDC+YY+RTGLCRFGM+C+FNHP DR +A+A
Sbjct: 55 LYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114
Query: 61 AARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNE 120
+ARMKGEYP+R+GQPECQYYLKTGTCKFG TCKFHHPREKA IA RVQLN LGYPLRP+E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174
Query: 121 KECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPL 180
KECAYYL+TGQCK+G+TCKFHHP+ N M + RGS P ++ + Y G + +W
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234
Query: 181 SRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTG 240
R SFI SPRW S+YA +IVP GLVQVP WN Y Q+ SS + + + GAQ G
Sbjct: 235 PR-GSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYG 293
Query: 241 SRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVC 300
+ + G+QGM S Y++ S P+ Y +QRE++FPERPDQPECQ+YMKTGDCKFGAVC
Sbjct: 294 TSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVC 353
Query: 301 KFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDH-----PMGTV 355
KFHHP+ R +PTP+C LS +GLPLRPGE +C FYSRYGICKFG NCKFDH PMG
Sbjct: 354 KFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVY 413
Query: 356 MYGLATSPTGDVSARRML 373
YG A+ T RR+L
Sbjct: 414 AYGSAS--TNVPMVRRLL 429
>Os01g0257400 Zinc finger, CCCH-type domain containing protein
Length = 466
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 232/403 (57%), Gaps = 52/403 (12%)
Query: 7 EAMWQMNLG-------EAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 59
E+MW+M LG EA+ AG PER GE DC YY+RTG C +G C++NHP DR
Sbjct: 25 ESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDR---A 81
Query: 60 AAARMKG--------EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNA 111
AAA + G EYP+R GQP C+YY+K GTCKFG+ CK+ HPRE + A V LN+
Sbjct: 82 AAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA--VMLNS 139
Query: 112 LGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTY 171
GYPLR EK+C YY++TG CKFGSTCKFHHP+ V+ ++Y P Q S H Y
Sbjct: 140 SGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGG--VSETPNMYPPVQPQPISSSHPY 197
Query: 172 PGAVTNWPLSRSASFIASPRWPGH---SSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQ 228
+ W + R P PG SY +++P +V + GWNPY + + +S
Sbjct: 198 -QHLAGWQMGRP------PVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVASAGG 250
Query: 229 QRTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGS--VPLGLYTV-----QRESIFPERPD 281
+T +Y + QG ++ GS PL T+ ++E FP RP
Sbjct: 251 HQTVQAGPFY---------GLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPG 301
Query: 282 QPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICK 341
QPECQ+Y+KTG CKFG+ CK+HHP+ P NC LS LGLPLRPG C +Y+++G CK
Sbjct: 302 QPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCK 361
Query: 342 FGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVPAHSEVSP 384
FGP CKFDHPMGT+ Y + S D+ +AP P + V+P
Sbjct: 362 FGPTCKFDHPMGTLSYSPSASSITDLP----IAPYPLNYAVAP 400
>Os01g0258700 Zinc finger, CCCH-type domain containing protein
Length = 476
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 21/388 (5%)
Query: 24 PERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG----EYPQRIGQPECQY 79
PER GE DC YY+RTG C FG C++NHP DR + +YP+R GQP C+Y
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 80 YLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCK 139
Y+KTGTCKFG CK+HHP++ A+ V LN G+P+R EKEC+YY++TGQCKFG+TCK
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQDGAVLP-VMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175
Query: 140 FHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSASFIASPRWPGHSSYA 199
FHHP+ V + +Y P QS + S H Y ++ NW + R S PG SY
Sbjct: 176 FHHPEFGG--VPMTPGIYPPLQSPSIASPHPY-ASLANWQMGRPPVVPGS-YIPG--SYT 229
Query: 200 QVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSETPNMGDQGMFSSYQ 259
+++ G++ + GW+PY A + S Q+ Y H + + G + Y
Sbjct: 230 PMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYA 289
Query: 260 AGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSS 319
+ + Q+E FPERP QP+CQ+YM+TGDCKFGA CK+HHP+E P ++S
Sbjct: 290 SSTGQSS--NNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNS 347
Query: 320 LGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVS--------ARR 371
L LPLRPG C +Y++ G C++G CK+DHPMGT+ Y + P D+ +
Sbjct: 348 LCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIA 407
Query: 372 MLAPVPAHSEVSPDNVSGRSRRITHSDS 399
LAP ++ P+ +S + + + S
Sbjct: 408 TLAPSSPSPDLRPEYISTKDQSVNQVTS 435
>Os12g0278800 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1. Splice isoform 3
Length = 529
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 156/303 (51%), Gaps = 24/303 (7%)
Query: 55 RKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHP--REKAAIATRVQLNAL 112
+++ VA + K + Q EC+YY G CKFG CK+ H +E A +V LN L
Sbjct: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
Query: 113 GYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQ--HT 170
G PLRP EKEC YY+RTG CK+ + CKFHHP PSN + G + Q +
Sbjct: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSS 340
Query: 171 YPGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPP-GLVQVPGWNPYAAQIGSSSSDDQQ 229
P A + WP R+ + P SY+ ++PP G+ P WN Y
Sbjct: 341 QPNA-SIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGY------------H 387
Query: 230 RTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYM 289
+ Y G P Y+A +P G V E +PERP QPECQ ++
Sbjct: 388 QVPLNPYYPPGVPFQHFPAAPIN--HPMYKAPEIP-GHQQVPSEE-YPERPGQPECQHFV 443
Query: 290 KTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFD 349
K+G CKF CK+HHP+ + P ALS LGLP++P +P+CT+Y RYG+CKFGP C ++
Sbjct: 444 KSGFCKFRMKCKYHHPRSPVPPA--GALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYN 501
Query: 350 HPM 352
HP
Sbjct: 502 HPF 504
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 49 FNHPADRKMAVAAARM--KGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATR 106
NHP + + + EYP+R GQPECQ+++K+G CKF CK+HHPR + +
Sbjct: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPR--SPVPPA 466
Query: 107 VQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHP 143
L+ LG P++P++ C YY R G CKFG C ++HP
Sbjct: 467 GALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 23 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLK 82
YPER G+P+C +++++G C+F M CK++HP A G P + QP C YY +
Sbjct: 430 YPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLG-LPIKPDQPVCTYYGR 488
Query: 83 TGTCKFGATCKFHHP 97
G CKFG C ++HP
Sbjct: 489 YGVCKFGPACAYNHP 503
>Os01g0616400 Similar to Floral homeotic protein HUA1
Length = 461
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 182/364 (50%), Gaps = 53/364 (14%)
Query: 23 YPERIGEPDCSYYMRTGLCRFGMTCKFNHP-----ADRKMAVAAARMKGEYPQRIGQPEC 77
YP+R GE DC++YM T C+FG +CKF+HP AA ++ YP++ G+P+C
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPDC 161
Query: 78 QYYLKTGTCKFGATCKFHHPREKA-AIAT------RVQLNALGYPLRPNEKECAYYLRTG 130
+++KTG CKFG+ CKF+HP+EK A+A+ + ++ P+RP+E C++Y +TG
Sbjct: 162 PFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTG 221
Query: 131 QCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSASFIASP 190
+CKF + CKF+HP+ + + S P +VT + T G+ + ++ + +A+
Sbjct: 222 KCKFRAMCKFNHPKD----IEIPSSQNEPESAVTVEGE-TDIGSAADSVSAKMQTPVAA- 275
Query: 191 RWPGHSSYAQVIVPPGLVQVPGWN--PYAAQIGSSS------SDDQQRTAGGAQYYTGSR 242
AQ GL PG P+ ++GS + R G
Sbjct: 276 --------AQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQT 327
Query: 243 HSETPN---MGDQGMFS---SYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKF 296
TP + F + A +P+G V +P+RP C FYMKTG CKF
Sbjct: 328 ILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPV----TYPQRPGATVCDFYMKTGFCKF 383
Query: 297 GAVCKFHHPKERIIPTP---------NCALSSLGLPLRPGEPICTFYSRYGICKFGPNCK 347
CKFHHP +R P P + L+ GLP R +C FY + G+CKFG CK
Sbjct: 384 ADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCK 443
Query: 348 FDHP 351
FDHP
Sbjct: 444 FDHP 447
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 133/322 (41%), Gaps = 67/322 (20%)
Query: 68 YPQRIGQPECQYYLKTGTCKFGATCKFHHPR---EKAAIATRVQLNAL-GYPLRPNEKEC 123
YPQR G+ +C +Y+ T TCKFG +CKF HP+ E + N YP + E +C
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPDC 161
Query: 124 AYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRS 183
++++TG+CKFGS CKF+HP+ +A S + +H ++ S
Sbjct: 162 PFFMKTGKCKFGSKCKFNHPKEKVNALA----------SGNTNDKHL---------IADS 202
Query: 184 ASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRH 243
+ P P S YA+ +P +I SS ++ + + GS
Sbjct: 203 SILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAA 262
Query: 244 SETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFH 303
S P+ P RP + +C FYMK G CKFG+ C+F+
Sbjct: 263 D-----------SVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFN 311
Query: 304 HPK-----------ERIIPTPNCALSS----------------------LGLPLRPGEPI 330
HP + I+PTP L + + P RPG +
Sbjct: 312 HPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATV 371
Query: 331 CTFYSRYGICKFGPNCKFDHPM 352
C FY + G CKF CKF HP+
Sbjct: 372 CDFYMKTGFCKFADRCKFHHPI 393
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 83/176 (47%), Gaps = 45/176 (25%)
Query: 24 PERIGEPDCSYYMRTGLCRFGMTCKFNHPADRK--------------------MAVAAAR 63
P R GE DC +YM+ G C+FG TC+FNHP DR + +A
Sbjct: 285 PMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLVLNFPLPLGQTILPTPESMLLNSSANF 343
Query: 64 MKG---------------EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAA------ 102
M+G YPQR G C +Y+KTG CKF CKFHHP +++A
Sbjct: 344 MQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSAN 403
Query: 103 ---IATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGS 155
VQL G P R + CA+Y++TG CKFG CKF HP P + V S
Sbjct: 404 WEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNS 459
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 18 MEAGP----YPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMK-------- 65
M GP YP+R G C +YM+TG C+F CKF+HP DR +A +
Sbjct: 354 MPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQL 413
Query: 66 --GEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIA 104
P+R C +Y+KTG CKFG CKF HP + AIA
Sbjct: 414 TLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIA 454
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 275 IFPERPDQPECQFYMKTGDCKFGAVCKFHHPK---ERIIPT-PNCALSSLGLPLRPGEPI 330
I+P+RP + +C FYM T CKFG CKF HP+ E IP A P + GEP
Sbjct: 101 IYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPD 160
Query: 331 CTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGD--VSARRMLAPV-PAHSEVSPDNV 387
C F+ + G CKFG CKF+HP V LA+ T D + A + PV P+ S
Sbjct: 161 CPFFMKTGKCKFGSKCKFNHPKEKV-NALASGNTNDKHLIADSSILPVRPSEPLCSFYAK 219
Query: 388 SGRSR-----RITHSDSQQIPSGERGTE 410
+G+ + + H +IPS + E
Sbjct: 220 TGKCKFRAMCKFNHPKDIEIPSSQNEPE 247
>Os06g0520600 Similar to Zinc finger CCCH type domain containing protein ZFN-like
1
Length = 711
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 22/145 (15%)
Query: 23 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGE-YPQRIGQPECQYYL 81
+P R GEPDCSYY++ G C+FG++C +NHP R A + E +P+R G+P+C YY+
Sbjct: 41 HPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYV 100
Query: 82 KTGTCKFGATCKFHHP---------------------REKAAIATRVQLNALGYPLRPNE 120
K G+CKFG C+F+HP E + +V+LN LG PLRP
Sbjct: 101 KFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGT 160
Query: 121 KECAYYLRTGQCKFGSTCKFHHPQP 145
C+YY+ G CKFG+ CKF HP P
Sbjct: 161 GLCSYYMNRGICKFGTNCKFDHPDP 185
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 21/97 (21%)
Query: 276 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIP---------------------TPN 314
FP RP +P+C +Y+K G CKFG C+F+HP +P
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQ 146
Query: 315 CALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHP 351
L+ LGLPLRPG +C++Y GICKFG NCKFDHP
Sbjct: 147 VKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 57 MAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPL 116
+A +++ ++P+R G+P+C YY+K G+CKFG +C ++HP + + A +P
Sbjct: 30 VAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPR 89
Query: 117 RPNEKECAYYLRTGQCKFGSTCKFHHP 143
RP E +C+YY++ G CKFG C+F+HP
Sbjct: 90 RPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 264 PLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLP 323
P+ T + E P RP +P+C +Y+K G CKFG C ++HP R + + P
Sbjct: 29 PVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFP 88
Query: 324 LRPGEPICTFYSRYGICKFGPNCKFDHP 351
RPGEP C++Y ++G CKFG NC+F+HP
Sbjct: 89 RRPGEPDCSYYVKFGSCKFGMNCRFNHP 116
>Os06g0519400 Zinc finger, CCCH-type domain containing protein
Length = 279
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 98/197 (49%), Gaps = 31/197 (15%)
Query: 17 AMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPE 76
A+E YP R G PDCSYY+ G C+FGM C +NHPA A K E+PQR G+ +
Sbjct: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH----AGGCDKLEHPQRPGEHD 125
Query: 77 CQYYLKTGTCKFGATCKFHHP--------------------REKAAIATRVQLNALGYPL 116
C +YL+ G CK+G C+F+HP E + A V+LN LG PL
Sbjct: 126 CLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPL 185
Query: 117 RPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSV----YSPGQSVTSPSQHTYP 172
RP C+YY+ G CKFGS CKFHHP + GS+ S G ++ S H
Sbjct: 186 RPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVLDH--- 242
Query: 173 GAVTNWPLSRSASFIAS 189
G + P+ F S
Sbjct: 243 GELNEQPVPSKDDFQVS 259
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 20/95 (21%)
Query: 277 PERPDQPECQFYMKTGDCKFGAVCKFHHPKERI------IPTPNC--------------A 316
P+RP + +C Y++ G CK+G C+F+HP +R+ P C
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 317 LSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHP 351
L+ LGLPLRPG +C++Y GICKFG NCKF HP
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 276 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYS 335
+P RP P+C +Y++ G CKFG C ++HP + L P RPGE C Y
Sbjct: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAG-----GCDKLEHPQRPGEHDCLHYL 130
Query: 336 RYGICKFGPNCKFDHP 351
R+G CK+G NC+F+HP
Sbjct: 131 RFGRCKYGMNCRFNHP 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,589,936
Number of extensions: 765345
Number of successful extensions: 1988
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1836
Number of HSP's successfully gapped: 26
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)