Os12g0405100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Floral homeotic protein HUA1.
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Os12g0405100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Floral homeotic protein HUA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.81 | 0.257 | 12.8 | -0.519 | 0.521 | -0.573 | 0.634 | 1.04 | 0.0416 | 0.812 | 20.09 | 252 | -- | -- |
| 30.63 | 0.258 | 12.8 | -0.637 | 0.601 | -0.548 | 0.557 | -- | 0.0134 | 0.563 | 18.1 | 404 | -- | -- |
| 31.18 | 0.26 | 12.8 | -0.529 | 0.614 | -0.578 | -- | 0.963 | 0.0379 | 0.608 | 18.93 | 459 | -- | -- |
| 31.36 | 0.261 | 12.9 | -0.706 | 0.518 | -0.7 | -- | -- | -0.0067 | 0.673 | 13.83 | 249 | -- | -- |
| 40.35 | 0.296 | 12.8 | -0.57 | -- | -1 | -- | 0.359 | 0.0926 | -- | 19.76 | 13 | -- | -- |
| 35.07 | 0.278 | 12.9 | -0.838 | 0.648 | -- | 0.601 | -- | -0.103 | 1.73 | -- | -- | -- | -- |
| 36.49 | 0.283 | 12.9 | -0.857 | 0.648 | -- | -- | -- | -0.106 | 1.69 | -- | -- | -- | -- |
| 40.4 | 0.296 | 12.8 | -0.623 | -- | -1.04 | -- | -- | 0.0678 | -- | 18 | 14 | -- | -- |
| 43.21 | 0.306 | 12.8 | -- | 0.502 | -1.03 | -- | -- | 0.113 | 23.9 | 12.19 | 306 | -- | -- |
| 62.07 | 0.368 | 12.9 | -0.831 | -- | -- | -- | -- | -0.0914 | -- | -- | -- | -- | -- |
| 55.84 | 0.35 | 12.9 | -- | 0.633 | -- | -- | -- | -0.0104 | 1.65 | -- | -- | -- | -- |
| 49.59 | 0.328 | 12.8 | -- | -- | -1.42 | -- | -- | 0.163 | -- | 14.36 | 14 | -- | -- |
| 80.27 | 0.418 | 12.8 | -- | -- | -- | -- | -- | 0.000774 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.78 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 15 | 29.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 24 | 29.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 50 | 29.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 51 | 29.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 54 | 29.64 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 58 | 29.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 66 | 29.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 67 | 29.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 68 | 29.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 71 | 29.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 78 | 29.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 85 | 29.77 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 88 | 29.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 95 | 29.80 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 96 | 29.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 106 | 29.80 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 124 | 29.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 125 | 29.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 126 | 29.84 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 128 | 29.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 130 | 29.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 160 | 29.89 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 178 | 29.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 180 | 29.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 199 | 29.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 204 | 29.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 209 | 29.95 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 211 | 29.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 212 | 29.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 226 | 29.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 250 | 29.98 | temperature | 25 | 90 | > th | dose dependent | sin | 19 | NA |
| 252 | 29.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 269 | 30.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 284 | 30.01 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 295 | 30.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 303 | 30.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 358 | 30.06 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 359 | 30.06 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 377 | 30.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 408 | 30.10 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 462 | 30.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 467 | 30.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 483 | 30.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 487 | 30.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 490 | 30.15 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 498 | 30.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 500 | 30.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 519 | 30.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 549 | 30.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 12 |
| 596 | 30.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 615 | 30.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 631 | 30.22 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 723 | 30.25 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 726 | 30.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 858 | 30.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 1000 | 30.33 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |