BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0226400 Os12g0226400|Os12g0226400
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0226400 Similar to Quinone oxidoreductase-like protein 416 e-117
Os12g0226900 Similar to Allyl alcohol dehydrogenase 320 6e-88
Os12g0226700 Similar to Allyl alcohol dehydrogenase 309 1e-84
Os04g0497000 Similar to Allyl alcohol dehydrogenase 285 2e-77
Os11g0255500 Similar to Allyl alcohol dehydrogenase 272 1e-73
Os01g0891300 Similar to Allyl alcohol dehydrogenase 247 4e-66
Os09g0459800 Similar to ARP protein 86 2e-17
Os12g0225900 Alcohol dehydrogenase superfamily, zinc-contai... 80 1e-15
AK060364 77 6e-15
>Os12g0226400 Similar to Quinone oxidoreductase-like protein
Length = 204
Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MGLYSGMHGLTAYVGFFEMSKPKKACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLLKTK 60
MGLYSGMHGLTAYVGFFEMSKPKKACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLLKTK
Sbjct: 1 MGLYSGMHGLTAYVGFFEMSKPKKACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLLKTK 60
Query: 61 FGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGMISQ 120
FGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGMISQ
Sbjct: 61 FGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGMISQ 120
Query: 121 YHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIVQGL 180
YHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIVQGL
Sbjct: 121 YHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIVQGL 180
Query: 181 DAAPAALIGIYNGLNVGKQLVAIA 204
DAAPAALIGIYNGLNVGKQLVAIA
Sbjct: 181 DAAPAALIGIYNGLNVGKQLVAIA 204
>Os12g0226900 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 320 bits (819), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 159/207 (76%), Positives = 177/207 (85%), Gaps = 8/207 (3%)
Query: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
GM GLTAY GFFE+SKPKK A GA+GQIVGQLAKI GCYVVGSAGSD+KV+LL
Sbjct: 138 GMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVSLL 197
Query: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
KTKFGF+DAFNYKKE DLEAAL+R FPEGIDI FENVGG LDAVLPNMRLGGRI CGM
Sbjct: 198 KTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVLPNMRLGGRIAACGM 257
Query: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
ISQY+LERPEGV+NL YI+TKRLRMEGF++FD Y QFE+EMA YL+EGKV Y+ED+V
Sbjct: 258 ISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDEMARYLKEGKVAYVEDVV 317
Query: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
+GLDAAPAALI ++ G NVGKQLVAIA
Sbjct: 318 EGLDAAPAALIKLFTGRNVGKQLVAIA 344
>Os12g0226700 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 174/207 (84%), Gaps = 8/207 (3%)
Query: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
GM GLTAY GFF++ KPKK A GA+GQ+VGQLAKI GCYV+GSAG D+KVNLL
Sbjct: 138 GMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITGCYVIGSAGYDEKVNLL 197
Query: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
K+KFGFDDAFNYKKE DLEAAL+R FPEGIDI +ENVGG MLDAVLPNM LGGRI CGM
Sbjct: 198 KSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVACGM 257
Query: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
ISQY+LE+PEGVRNL YI+TKRLRMEGF +FD Y +FEEEMAGYL+E KV+Y+ED+V
Sbjct: 258 ISQYNLEQPEGVRNLYYIVTKRLRMEGFHVFDYYDRYYRFEEEMAGYLKEEKVSYVEDVV 317
Query: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
+GLD APAALI ++ G +VGKQLVA+A
Sbjct: 318 EGLDTAPAALIRLFTGRSVGKQLVAVA 344
>Os04g0497000 Similar to Allyl alcohol dehydrogenase
Length = 345
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/207 (65%), Positives = 167/207 (80%), Gaps = 8/207 (3%)
Query: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
GM G TAYVGF E+ P++ A GA+GQ+VGQ AK+ GCYVVGSAGSDDKV LL
Sbjct: 137 GMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMGCYVVGSAGSDDKVRLL 196
Query: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
+ KFGFDDAFNYKKE+DL AALKRCFPEGIDI FENVGGAMLDAVL NMR+ GR+ CGM
Sbjct: 197 REKFGFDDAFNYKKESDLSAALKRCFPEGIDIYFENVGGAMLDAVLLNMRVRGRVAACGM 256
Query: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
ISQY+LE P+ V NL I+TKRLR+EGF++ D A YR++EE+ A Y++EGK+ Y+ED+
Sbjct: 257 ISQYNLEHPDPVHNLTAIVTKRLRIEGFIVSDHYARYREYEEKAARYVKEGKIAYVEDVA 316
Query: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
+GL+ APAALIG+++G NVGKQ+V +A
Sbjct: 317 EGLENAPAALIGLFSGRNVGKQVVVVA 343
>Os11g0255500 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 272 bits (695), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/208 (64%), Positives = 166/208 (79%), Gaps = 9/208 (4%)
Query: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
G+ GLTAY FFE+ KPKK A GA+GQIVGQLAKI GCYVVGSAGSD+KV LL
Sbjct: 150 GVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIAGCYVVGSAGSDEKVTLL 209
Query: 58 KTKFGFDDAFNYKKET-DLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCG 116
KTKFGF DAFNYKKE+ DL AL+RCFP+GIDI F+NVGGA LDA L NMR GGR+ +CG
Sbjct: 210 KTKFGFHDAFNYKKESNDLTGALRRCFPDGIDIYFDNVGGATLDAALVNMRRGGRVVVCG 269
Query: 117 MISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDI 176
MISQY+L+ PEGV N++ I++K +R+EGF +F+ +Y FE+EMA YL+EGKVT L+D+
Sbjct: 270 MISQYNLQEPEGVHNVIQILSKTIRVEGFAVFNHFGLYPMFEDEMARYLKEGKVTVLQDV 329
Query: 177 VQGLDAAPAALIGIYNGLNVGKQLVAIA 204
V+G++ A ALIG+++G NVGK LVA+A
Sbjct: 330 VKGIEKASEALIGMFSGRNVGKLLVAVA 357
>Os01g0891300 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 247 bits (631), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 155/207 (74%), Gaps = 8/207 (3%)
Query: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
GM G TAY GF+E+ PKK A GA+GQIVGQLAK+ GCYVVGSAG++ KV LL
Sbjct: 145 GMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKVELL 204
Query: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
K KFGFD AFNYK+E DL AALKR FPEGIDI FENVGG MLDAVL NMR GRI +CGM
Sbjct: 205 KGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGPMLDAVLLNMRTHGRIAVCGM 264
Query: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
+SQ L P G+ N+ ++ KR+RM+GF+ D + ++ QF +MA + R+GK+ Y+ED+
Sbjct: 265 VSQNALTDPVGIHNIFCLVPKRIRMQGFIQSDHLHMFPQFVSDMAKHYRDGKIVYVEDMS 324
Query: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
GL+ APAAL+G+++G NVGK++V ++
Sbjct: 325 IGLENAPAALVGLFSGKNVGKKVVCVS 351
>Os09g0459800 Similar to ARP protein
Length = 634
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 8/185 (4%)
Query: 25 ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLLKTKFGFDDAFNYKKETDLEAALKRCFP 84
A G GQ QLAK+ G VV + G K LL + G D NY+ E ++ LK+ FP
Sbjct: 441 AAGGTGQFAVQLAKLAGNKVVATCGGKCKAALLSS-LGVDRVINYQNE-KIKDVLKKEFP 498
Query: 85 EGIDIDFENVGGAMLDAVLPNMRLGGRITMCGMISQYHLERPEGVRNLM----YIITKRL 140
G DI +E+VGG M D L + + GR+ + GMISQY E RN I+ K
Sbjct: 499 RGADIIYESVGGEMFDLCLNALAVHGRLIVIGMISQYQGEHGWKPRNYTGLCDKILAKSQ 558
Query: 141 RMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIVQ--GLDAAPAALIGIYNGLNVGK 198
+ GF + +++ +++ GK+ D + G+ +AP A+ +++G +VGK
Sbjct: 559 TVAGFFLIQYAHLWQDHLDKLFDLYASGKLKVSLDPKKFVGVASAPDAVEYLHSGKSVGK 618
Query: 199 QLVAI 203
+V I
Sbjct: 619 VVVCI 623
>Os12g0225900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 111
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 46/58 (79%), Gaps = 8/58 (13%)
Query: 5 SGMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKV 54
SG+ GLTAY GFFE+SKPKK A GA+GQIVGQLAKI GCYVVGSAGSD+KV
Sbjct: 15 SGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
>AK060364
Length = 332
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 25 ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLLKTKFGFDDAFNYKKETDLEAALKRCFP 84
A G GQ V QLAK+ G +V+G+ SD+K +LK + G D NY KE D++ LK +P
Sbjct: 148 AAGGAGQFVVQLAKLAGNHVIGTTSSDEKAEVLK-ELGCDRVINYNKE-DIDTVLKTEYP 205
Query: 85 EGIDIDFENVGGAMLDAVLPNMRLGGRITMCGMISQY 121
+G+D+ F+ VGG A + N+ + GR+ + G IS Y
Sbjct: 206 KGVDLVFDTVGGETFKAAVQNIAVRGRLIVFGNISGY 242
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.142 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,609,598
Number of extensions: 265547
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 9
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)